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Items: 45

1.

Insertional oncogenesis by HPV70 revealed by multiple genomic analyses in a clinically HPV-negative cervical cancer.

Van Arsdale A, Patterson NE, Maggi EC, Agoni L, Van Doorslaer K, Harmon B, Nevadunsky N, Kuo DYS, Einstein MH, Lenz J, Montagna C.

Genes Chromosomes Cancer. 2020 Feb;59(2):84-95. doi: 10.1002/gcc.22799. Epub 2019 Sep 4.

PMID:
31407403
2.

Neisseria gonorrhoeae evades autophagic killing by downregulating CD46-cyt1 and remodeling lysosomes.

Kim WJ, Mai A, Weyand NJ, Rendón MA, Van Doorslaer K, So M.

PLoS Pathog. 2019 Feb 12;15(2):e1007495. doi: 10.1371/journal.ppat.1007495. eCollection 2019 Feb.

3.

The Launch of an International Animal Papillomavirus Reference Center.

Van Doorslaer K, Dillner J.

Viruses. 2019 Jan 14;11(1). pii: E55. doi: 10.3390/v11010055.

4.

Metagenomic Discovery of 83 New Human Papillomavirus Types in Patients with Immunodeficiency.

Pastrana DV, Peretti A, Welch NL, Borgogna C, Olivero C, Badolato R, Notarangelo LD, Gariglio M, FitzGerald PC, McIntosh CE, Reeves J, Starrett GJ, Bliskovsky V, Velez D, Brownell I, Yarchoan R, Wyvill KM, Uldrick TS, Maldarelli F, Lisco A, Sereti I, Gonzalez CM, Androphy EJ, McBride AA, Van Doorslaer K, Garcia F, Dvoretzky I, Liu JS, Han J, Murphy PM, McDermott DH, Buck CB.

mSphere. 2018 Dec 12;3(6). pii: e00645-18. doi: 10.1128/mSphereDirect.00645-18.

5.

Building (Viral) Phylogenetic Trees Using a Maximum Likelihood Approach.

King KM, Van Doorslaer K.

Curr Protoc Microbiol. 2018 Nov;51(1):e63. doi: 10.1002/cpmc.63. Epub 2018 Sep 28.

PMID:
30265446
6.

ICTV Virus Taxonomy Profile: Papillomaviridae.

Van Doorslaer K, Chen Z, Bernard HU, Chan PKS, DeSalle R, Dillner J, Forslund O, Haga T, McBride AA, Villa LL, Burk RD, Ictv Report Consortium.

J Gen Virol. 2018 Aug;99(8):989-990. doi: 10.1099/jgv.0.001105. Epub 2018 Jun 21.

7.

Fish polyomaviruses belong to two distinct evolutionary lineages.

Van Doorslaer K, Kraberger S, Austin C, Farkas K, Bergeman M, Paunil E, Davison W, Varsani A.

J Gen Virol. 2018 Apr;99(4):567-573. doi: 10.1099/jgv.0.001041. Epub 2018 Mar 8.

8.

Persistence of an Oncogenic Papillomavirus Genome Requires cis Elements from the Viral Transcriptional Enhancer.

Van Doorslaer K, Chen D, Chapman S, Khan J, McBride AA.

MBio. 2017 Nov 21;8(6). pii: e01758-17. doi: 10.1128/mBio.01758-17.

9.

Unique genome organization of non-mammalian papillomaviruses provides insights into the evolution of viral early proteins.

Van Doorslaer K, Ruoppolo V, Schmidt A, Lescroël A, Jongsomjit D, Elrod M, Kraberger S, Stainton D, Dugger KM, Ballard G, Ainley DG, Varsani A.

Virus Evol. 2017 Oct 6;3(2):vex027. doi: 10.1093/ve/vex027. eCollection 2017 Jul.

10.

The Papillomavirus Episteme: a major update to the papillomavirus sequence database.

Van Doorslaer K, Li Z, Xirasagar S, Maes P, Kaminsky D, Liou D, Sun Q, Kaur R, Huyen Y, McBride AA.

Nucleic Acids Res. 2017 Jan 4;45(D1):D499-D506. doi: 10.1093/nar/gkw879. Epub 2016 Oct 5.

11.

Novel recombinant papillomavirus genomes expressing selectable genes.

Van Doorslaer K, Porter S, McKinney C, Stepp WH, McBride AA.

Sci Rep. 2016 Nov 28;6:37782. doi: 10.1038/srep37782.

12.

Detection and Genotyping of Human Papillomaviruses from Archival Formalin-Fixed Tissue Samples.

Van Doorslaer K, Chen Z, McBride AA.

Curr Protoc Microbiol. 2016 Nov 18;43:14B.9.1-14B.9.20. doi: 10.1002/cpmc.16.

13.

Molecular archeological evidence in support of the repeated loss of a papillomavirus gene.

Van Doorslaer K, McBride AA.

Sci Rep. 2016 Sep 8;6:33028. doi: 10.1038/srep33028.

14.

The Ancient Evolutionary History of Polyomaviruses.

Buck CB, Van Doorslaer K, Peretti A, Geoghegan EM, Tisza MJ, An P, Katz JP, Pipas JM, McBride AA, Camus AC, McDermott AJ, Dill JA, Delwart E, Ng TF, Farkas K, Austin C, Kraberger S, Davison W, Pastrana DV, Varsani A.

PLoS Pathog. 2016 Apr 19;12(4):e1005574. doi: 10.1371/journal.ppat.1005574. eCollection 2016 Apr.

15.

Data in support of UbSRD: The Ubiquitin Structural Relational Database.

Harrison JS, Jacobs TM, Houlihan K, Van Doorslaer K, Kuhlman B.

Data Brief. 2015 Oct 19;5:605-15. doi: 10.1016/j.dib.2015.10.007. eCollection 2015 Dec.

16.

UbSRD: The Ubiquitin Structural Relational Database.

Harrison JS, Jacobs TM, Houlihan K, Van Doorslaer K, Kuhlman B.

J Mol Biol. 2016 Feb 22;428(4):679-687. doi: 10.1016/j.jmb.2015.09.011. Epub 2015 Sep 25.

17.

Degradation of Human PDZ-Proteins by Human Alphapapillomaviruses Represents an Evolutionary Adaptation to a Novel Cellular Niche.

Van Doorslaer K, DeSalle R, Einstein MH, Burk RD.

PLoS Pathog. 2015 Jun 18;11(6):e1004980. doi: 10.1371/journal.ppat.1004980. eCollection 2015 Jun.

18.

A proteomic approach to discover and compare interacting partners of papillomavirus E2 proteins from diverse phylogenetic groups.

Jang MK, Anderson DE, van Doorslaer K, McBride AA.

Proteomics. 2015 Jun;15(12):2038-50. doi: 10.1002/pmic.201400613. Epub 2015 Apr 28.

19.

Role of the host restriction factor APOBEC3 on papillomavirus evolution.

Warren CJ, Van Doorslaer K, Pandey A, Espinosa JM, Pyeon D.

Virus Evol. 2015 Jan;1(1). pii: vev015. Epub 2015 Jan 1.

20.

Evolution of the papillomaviridae.

Van Doorslaer K.

Virology. 2013 Oct;445(1-2):11-20. doi: 10.1016/j.virol.2013.05.012. Epub 2013 Jun 14. Review.

21.

Condylomatous genital lesions in cynomolgus macaques from Mauritius.

Harari A, Wood CE, Van Doorslaer K, Chen Z, Domaingue MC, Elmore D, Koenig P, Wagner JD, Jennings RN, Burk RD.

Toxicol Pathol. 2013 Aug;41(6):893-901. doi: 10.1177/0192623312467521. Epub 2012 Dec 21.

22.

The Papillomavirus Episteme: a central resource for papillomavirus sequence data and analysis.

Van Doorslaer K, Tan Q, Xirasagar S, Bandaru S, Gopalan V, Mohamoud Y, Huyen Y, McBride AA.

Nucleic Acids Res. 2013 Jan;41(Database issue):D571-8. doi: 10.1093/nar/gks984. Epub 2012 Oct 23.

23.

Association between hTERT activation by HPV E6 proteins and oncogenic risk.

Van Doorslaer K, Burk RD.

Virology. 2012 Nov 10;433(1):216-9. doi: 10.1016/j.virol.2012.08.006. Epub 2012 Aug 25.

24.

Recent developments in the interactions between caveolin and pathogens.

Machado FS, Rodriguez NE, Adesse D, Garzoni LR, Esper L, Lisanti MP, Burk RD, Albanese C, Van Doorslaer K, Weiss LM, Nagajyothi F, Nosanchuk JD, Wilson ME, Tanowitz HB.

Adv Exp Med Biol. 2012;729:65-82. doi: 10.1007/978-1-4614-1222-9_5. Review.

25.

Sequence imputation of HPV16 genomes for genetic association studies.

Smith B, Chen Z, Reimers L, van Doorslaer K, Schiffman M, Desalle R, Herrero R, Yu K, Wacholder S, Wang T, Burk RD.

PLoS One. 2011;6(6):e21375. doi: 10.1371/journal.pone.0021375. Epub 2011 Jun 23.

26.

Papillomaviruses: evolution, Linnaean taxonomy and current nomenclature.

Van Doorslaer K, Bernard HU, Chen Z, de Villiers EM, zur Hausen H, Burk RD.

Trends Microbiol. 2011 Feb;19(2):49-50; author reply 50-1. doi: 10.1016/j.tim.2010.11.004. Epub 2010 Dec 7. No abstract available.

27.

Evolution of human papillomavirus carcinogenicity.

Van Doorslaer K, Burk RD.

Adv Virus Res. 2010;77:41-62. doi: 10.1016/B978-0-12-385034-8.00002-8. Review.

28.

Degradation of p53 by human Alphapapillomavirus E6 proteins shows a stronger correlation with phylogeny than oncogenicity.

Fu L, Van Doorslaer K, Chen Z, Ristriani T, Masson M, Travé G, Burk RD.

PLoS One. 2010 Sep 17;5(9). pii: e12816. doi: 10.1371/journal.pone.0012816.

29.

Overexpression of miR-21 promotes an in vitro metastatic phenotype by targeting the tumor suppressor RHOB.

Connolly EC, Van Doorslaer K, Rogler LE, Rogler CE.

Mol Cancer Res. 2010 May;8(5):691-700. doi: 10.1158/1541-7786.MCR-09-0465. Epub 2010 May 11.

30.

Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments.

Bernard HU, Burk RD, Chen Z, van Doorslaer K, zur Hausen H, de Villiers EM.

Virology. 2010 May 25;401(1):70-9. doi: 10.1016/j.virol.2010.02.002. Epub 2010 Mar 5.

31.

Lack of heterogeneity of HPV16 E7 sequence compared with HPV31 and HPV73 may be related to its unique carcinogenic properties.

Safaeian M, van Doorslaer K, Schiffman M, Chen Z, Rodriguez AC, Herrero R, Hildesheim A, Burk RD.

Arch Virol. 2010 Mar;155(3):367-70. doi: 10.1007/s00705-009-0579-2. Epub 2010 Jan 6.

32.

Genomic diversity and interspecies host infection of alpha12 Macaca fascicularis papillomaviruses (MfPVs).

Chen Z, van Doorslaer K, DeSalle R, Wood CE, Kaplan JR, Wagner JD, Burk RD.

Virology. 2009 Oct 25;393(2):304-10. doi: 10.1016/j.virol.2009.07.012. Epub 2009 Aug 28.

33.

Human papillomaviruses: genetic basis of carcinogenicity.

Burk RD, Chen Z, Van Doorslaer K.

Public Health Genomics. 2009;12(5-6):281-90. doi: 10.1159/000214919. Epub 2009 Aug 11. Review.

34.

Serological response to an HPV16 E7 based therapeutic vaccine in women with high-grade cervical dysplasia.

Van Doorslaer K, Reimers LL, Studentsov YY, Einstein MH, Burk RD.

Gynecol Oncol. 2010 Feb;116(2):208-12. doi: 10.1016/j.ygyno.2009.05.044. Epub 2009 Jun 24.

35.

Identification of unusual E6 and E7 proteins within avian papillomaviruses: cellular localization, biophysical characterization, and phylogenetic analysis.

Van Doorslaer K, Sidi AO, Zanier K, Rybin V, Deryckère F, Rector A, Burk RD, Lienau EK, van Ranst M, Travé G.

J Virol. 2009 Sep;83(17):8759-70. doi: 10.1128/JVI.01777-08. Epub 2009 Jun 24.

36.

Macaca fascicularis papillomavirus type 1: a non-human primate betapapillomavirus causing rapidly progressive hand and foot papillomatosis.

Joh J, Hopper K, Van Doorslaer K, Sundberg JP, Jenson AB, Ghim SJ.

J Gen Virol. 2009 Apr;90(Pt 4):987-94. doi: 10.1099/vir.0.006544-0. Epub 2009 Mar 4.

PMID:
19264664
37.
38.

Genomic characterization of two novel reptilian papillomaviruses, Chelonia mydas papillomavirus 1 and Caretta caretta papillomavirus 1.

Herbst LH, Lenz J, Van Doorslaer K, Chen Z, Stacy BA, Wellehan JF Jr, Manire CA, Burk RD.

Virology. 2009 Jan 5;383(1):131-5. doi: 10.1016/j.virol.2008.09.022. Epub 2008 Oct 29.

39.

Genomic characterization of novel dolphin papillomaviruses provides indications for recombination within the Papillomaviridae.

Rector A, Stevens H, Lacave G, Lemey P, Mostmans S, Salbany A, Vos M, Van Doorslaer K, Ghim SJ, Rehtanz M, Bossart GD, Jenson AB, Van Ranst M.

Virology. 2008 Aug 15;378(1):151-61. doi: 10.1016/j.virol.2008.05.020. Epub 2008 Jun 24.

40.

Ancient papillomavirus-host co-speciation in Felidae.

Rector A, Lemey P, Tachezy R, Mostmans S, Ghim SJ, Van Doorslaer K, Roelke M, Bush M, Montali RJ, Joslin J, Burk RD, Jenson AB, Sundberg JP, Shapiro B, Van Ranst M.

Genome Biol. 2007;8(4):R57.

41.

Complete genomic characterization of a murine papillomavirus isolated from papillomatous lesions of a European harvest mouse (Micromys minutus).

Van Doorslaer K, Rector A, Jenson AB, Sundberg JP, Van Ranst M, Ghim SJ.

J Gen Virol. 2007 May;88(Pt 5):1484-8.

PMID:
17412977
42.

Genetic characterization of the first chiropteran papillomavirus, isolated from a basosquamous carcinoma in an Egyptian fruit bat: the Rousettus aegyptiacus papillomavirus type 1.

Rector A, Mostmans S, Van Doorslaer K, McKnight CA, Maes RK, Wise AG, Kiupel M, Van Ranst M.

Vet Microbiol. 2006 Oct 31;117(2-4):267-75. Epub 2006 Jul 18.

PMID:
16854536
43.

Genetic characterization of the Capra hircus papillomavirus: a novel close-to-root artiodactyl papillomavirus.

Van Doorslaer K, Rector A, Vos P, Van Ranst M.

Virus Res. 2006 Jun;118(1-2):164-9. Epub 2006 Jan 23.

PMID:
16430985
44.

Isolation and cloning of the raccoon (Procyon lotor) papillomavirus type 1 by using degenerate papillomavirus-specific primers.

Rector A, Van Doorslaer K, Bertelsen M, Barker IK, Olberg RA, Lemey P, Sundberg JP, Van Ranst M.

J Gen Virol. 2005 Jul;86(Pt 7):2029-33.

PMID:
15958682
45.

Isolation and cloning of a papillomavirus from a North American porcupine by using multiply primed rolling-circle amplification: the Erethizon dorsatum papillomavirus type 1.

Rector A, Tachezy R, Van Doorslaer K, MacNamara T, Burk RD, Sundberg JP, Van Ranst M.

Virology. 2005 Jan 20;331(2):449-56.

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