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Items: 19

1.

Disruption of mesoderm formation during cardiac differentiation due to developmental exposure to 13-cis-retinoic acid.

Liu Q, Van Bortle K, Zhang Y, Zhao MT, Zhang JZ, Geller BS, Gruber JJ, Jiang C, Wu JC, Snyder MP.

Sci Rep. 2018 Aug 28;8(1):12960. doi: 10.1038/s41598-018-31192-0.

2.

Topological organization and dynamic regulation of human tRNA genes during macrophage differentiation.

Van Bortle K, Phanstiel DH, Snyder MP.

Genome Biol. 2017 Sep 20;18(1):180. doi: 10.1186/s13059-017-1310-3.

3.

Static and Dynamic DNA Loops form AP-1-Bound Activation Hubs during Macrophage Development.

Phanstiel DH, Van Bortle K, Spacek D, Hess GT, Shamim MS, Machol I, Love MI, Aiden EL, Bassik MC, Snyder MP.

Mol Cell. 2017 Sep 21;67(6):1037-1048.e6. doi: 10.1016/j.molcel.2017.08.006. Epub 2017 Sep 7.

4.

Genome-Wide Temporal Profiling of Transcriptome and Open Chromatin of Early Cardiomyocyte Differentiation Derived From hiPSCs and hESCs.

Liu Q, Jiang C, Xu J, Zhao MT, Van Bortle K, Cheng X, Wang G, Chang HY, Wu JC, Snyder MP.

Circ Res. 2017 Aug 4;121(4):376-391. doi: 10.1161/CIRCRESAHA.116.310456. Epub 2017 Jun 29.

5.

Integrated tRNA, transcript, and protein profiles in response to steroid hormone signaling.

Van Bortle K, Nichols MH, Ramos E, Corces VG.

RNA. 2015 Oct;21(10):1807-17. doi: 10.1261/rna.052126.115. Epub 2015 Aug 19.

6.

CTCF-dependent co-localization of canonical Smad signaling factors at architectural protein binding sites in D. melanogaster.

Van Bortle K, Peterson AJ, Takenaka N, O'Connor MB, Corces VG.

Cell Cycle. 2015;14(16):2677-87. doi: 10.1080/15384101.2015.1053670.

7.

Intranuclear dynamics of the Nup107-160 complex.

Morchoisne-Bolhy S, Geoffroy MC, Bouhlel IB, Alves A, Audugé N, Baudin X, Van Bortle K, Powers MA, Doye V.

Mol Biol Cell. 2015 Jun 15;26(12):2343-56. doi: 10.1091/mbc.E15-02-0060. Epub 2015 Apr 22.

8.

Insulator function and topological domain border strength scale with architectural protein occupancy.

Van Bortle K, Nichols MH, Li L, Ong CT, Takenaka N, Qin ZS, Corces VG.

Genome Biol. 2014 Jun 30;15(6):R82. doi: 10.1186/gb-2014-15-5-r82.

9.

Lost in transition: dynamic enhancer organization across naive and primed stem cell states.

Van Bortle K, Corces VG.

Cell Stem Cell. 2014 Jun 5;14(6):693-4. doi: 10.1016/j.stem.2014.05.004.

10.

Poly(ADP-ribosyl)ation regulates insulator function and intrachromosomal interactions in Drosophila.

Ong CT, Van Bortle K, Ramos E, Corces VG.

Cell. 2013 Sep 26;155(1):148-59. doi: 10.1016/j.cell.2013.08.052. Epub 2013 Sep 19.

11.

Distinct isoforms of the Drosophila Brd4 homologue are present at enhancers, promoters and insulator sites.

Kellner WA, Van Bortle K, Li L, Ramos E, Takenaka N, Corces VG.

Nucleic Acids Res. 2013 Nov;41(20):9274-83. doi: 10.1093/nar/gkt722. Epub 2013 Aug 13.

12.

Dynamic changes in the genomic localization of DNA replication-related element binding factor during the cell cycle.

Gurudatta BV, Yang J, Van Bortle K, Donlin-Asp PG, Corces VG.

Cell Cycle. 2013 May 15;12(10):1605-15. doi: 10.4161/cc.24742. Epub 2013 Apr 25.

13.

Spinning the web of cell fate.

Van Bortle K, Corces VG.

Cell. 2013 Mar 14;152(6):1213-7. doi: 10.1016/j.cell.2013.02.052. Review.

14.

The role of chromatin insulators in nuclear architecture and genome function.

Van Bortle K, Corces VG.

Curr Opin Genet Dev. 2013 Apr;23(2):212-8. doi: 10.1016/j.gde.2012.11.003. Epub 2013 Jan 5. Review.

15.

Nuclear organization and genome function.

Van Bortle K, Corces VG.

Annu Rev Cell Dev Biol. 2012;28:163-87. doi: 10.1146/annurev-cellbio-101011-155824. Epub 2012 Aug 17. Review.

16.

tDNA insulators and the emerging role of TFIIIC in genome organization.

Van Bortle K, Corces VG.

Transcription. 2012 Nov-Dec;3(6):277-84. doi: 10.4161/trns.21579. Epub 2012 Aug 14. Review.

17.

Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains.

Van Bortle K, Ramos E, Takenaka N, Yang J, Wahi JE, Corces VG.

Genome Res. 2012 Nov;22(11):2176-87. doi: 10.1101/gr.136788.111. Epub 2012 Jun 21.

18.

Genome-wide phosphoacetylation of histone H3 at Drosophila enhancers and promoters.

Kellner WA, Ramos E, Van Bortle K, Takenaka N, Corces VG.

Genome Res. 2012 Jun;22(6):1081-8. doi: 10.1101/gr.136929.111. Epub 2012 Apr 16.

19.

Regulation of chromatin organization and inducible gene expression by a Drosophila insulator.

Wood AM, Van Bortle K, Ramos E, Takenaka N, Rohrbaugh M, Jones BC, Jones KC, Corces VG.

Mol Cell. 2011 Oct 7;44(1):29-38. doi: 10.1016/j.molcel.2011.07.035.

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