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Items: 35

1.

Dysregulation of the histone demethylase KDM6B in alcohol dependence is associated with epigenetic regulation of inflammatory signaling pathways.

Johnstone AL, Andrade NS, Barbier E, Khomtchouk BB, Rienas CA, Lowe K, Van Booven DJ, Domi E, Esanov R, Vilca S, Tapocik JD, Rodriguez K, Maryanski D, Keogh MC, Meinhardt MW, Sommer WH, Heilig M, Zeier Z, Wahlestedt C.

Addict Biol. 2019 Aug 1:e12816. doi: 10.1111/adb.12816. [Epub ahead of print]

PMID:
31373129
2.

Defective HNF4alpha-dependent gene expression as a driver of hepatocellular failure in alcoholic hepatitis.

Argemi J, Latasa MU, Atkinson SR, Blokhin IO, Massey V, Gue JP, Cabezas J, Lozano JJ, Van Booven D, Bell A, Cao S, Vernetti LA, Arab JP, Ventura-Cots M, Edmunds LR, Fondevilla C, Stärkel P, Dubuquoy L, Louvet A, Odena G, Gomez JL, Aragon T, Altamirano J, Caballeria J, Jurczak MJ, Taylor DL, Berasain C, Wahlestedt C, Monga SP, Morgan MY, Sancho-Bru P, Mathurin P, Furuya S, Lackner C, Rusyn I, Shah VH, Thursz MR, Mann J, Avila MA, Bataller R.

Nat Commun. 2019 Jul 16;10(1):3126. doi: 10.1038/s41467-019-11004-3.

3.

RNA editing alterations in a multi-ethnic Alzheimer disease cohort converge on immune and endocytic molecular pathways.

Gardner OK, Wang L, Van Booven D, Whitehead PL, Hamilton-Nelson KL, Adams LD, Starks TD, Hofmann NK, Vance JM, Cuccaro ML, Martin ER, Byrd GS, Haines JL, Bush WS, Beecham GW, Pericak-Vance MA, Griswold AJ.

Hum Mol Genet. 2019 Jun 4. pii: ddz110. doi: 10.1093/hmg/ddz110. [Epub ahead of print]

PMID:
31162550
4.
5.

Ascorbate Suppresses VEGF Expression in Retinal Pigment Epithelial Cells.

Sant DW, Camarena V, Mustafi S, Li Y, Wilkes Z, Van Booven D, Wen R, Wang G.

Invest Ophthalmol Vis Sci. 2018 Jul 2;59(8):3608-3618. doi: 10.1167/iovs.18-24101.

6.

Convergent Pathways in Idiopathic Autism Revealed by Time Course Transcriptomic Analysis of Patient-Derived Neurons.

DeRosa BA, El Hokayem J, Artimovich E, Garcia-Serje C, Phillips AW, Van Booven D, Nestor JE, Wang L, Cuccaro ML, Vance JM, Pericak-Vance MA, Cukier HN, Nestor MW, Dykxhoorn DM.

Sci Rep. 2018 May 30;8(1):8423. doi: 10.1038/s41598-018-26495-1.

7.

Identification of rare noncoding sequence variants in gamma-aminobutyric acid A receptor, alpha 4 subunit in autism spectrum disorder.

Griswold AJ, Van Booven D, Cuccaro ML, Haines JL, Gilbert JR, Pericak-Vance MA.

Neurogenetics. 2018 Jan;19(1):17-26. doi: 10.1007/s10048-017-0529-1. Epub 2017 Nov 18.

8.

High-throughput analysis reveals novel maternal germline RNAs crucial for primordial germ cell preservation and proper migration.

Owens DA, Butler AM, Aguero TH, Newman KM, Van Booven D, King ML.

Development. 2017 Jan 15;144(2):292-304. doi: 10.1242/dev.139220.

9.

Ischemic Preconditioning Confers Epigenetic Repression of Mtor and Induction of Autophagy Through G9a-Dependent H3K9 Dimethylation.

Gidlöf O, Johnstone AL, Bader K, Khomtchouk BB, O'Reilly JJ, Celik S, Van Booven DJ, Wahlestedt C, Metzler B, Erlinge D.

J Am Heart Assoc. 2016 Dec 22;5(12). pii: e004076. doi: 10.1161/JAHA.116.004076.

10.

Epigenomic and metabolic responses of hypothalamic POMC neurons to gestational nicotine exposure in adult offspring.

Silva JP, Lambert G, van Booven D, Wahlestedt C.

Genome Med. 2016 Sep 8;8(1):93. doi: 10.1186/s13073-016-0348-2.

11.

Dependence-induced increase of alcohol self-administration and compulsive drinking mediated by the histone methyltransferase PRDM2.

Barbier E, Johnstone AL, Khomtchouk BB, Tapocik JD, Pitcairn C, Rehman F, Augier E, Borich A, Schank JR, Rienas CA, Van Booven DJ, Sun H, Nätt D, Wahlestedt C, Heilig M.

Mol Psychiatry. 2017 Dec;22(12):1746-1758. doi: 10.1038/mp.2016.131. Epub 2016 Aug 30.

12.

ABCA7 frameshift deletion associated with Alzheimer disease in African Americans.

Cukier HN, Kunkle BW, Vardarajan BN, Rolati S, Hamilton-Nelson KL, Kohli MA, Whitehead PL, Dombroski BA, Van Booven D, Lang R, Dykxhoorn DM, Farrer LA, Cuccaro ML, Vance JM, Gilbert JR, Beecham GW, Martin ER, Carney RM, Mayeux R, Schellenberg GD, Byrd GS, Haines JL, Pericak-Vance MA; Alzheimer's Disease Genetics Consortium.

Neurol Genet. 2016 May 17;2(3):e79. doi: 10.1212/NXG.0000000000000079. eCollection 2016 Jun.

13.

Targeted massively parallel sequencing of autism spectrum disorder-associated genes in a case control cohort reveals rare loss-of-function risk variants.

Griswold AJ, Dueker ND, Van Booven D, Rantus JA, Jaworski JM, Slifer SH, Schmidt MA, Hulme W, Konidari I, Whitehead PL, Cuccaro ML, Martin ER, Haines JL, Gilbert JR, Hussman JP, Pericak-Vance MA.

Mol Autism. 2015 Jul 7;6:43. doi: 10.1186/s13229-015-0034-z. eCollection 2015.

14.

Epigenetic reprogramming of melanoma cells by vitamin C treatment.

Gustafson CB, Yang C, Dickson KM, Shao H, Van Booven D, Harbour JW, Liu ZJ, Wang G.

Clin Epigenetics. 2015 Apr 29;7:51. doi: 10.1186/s13148-015-0087-z. eCollection 2015.

15.

Pharmacogenomic assessment of Mexican and Peruvian populations.

Marsh S, King CR, Van Booven DJ, Revollo JY, Gilman RH, McLeod HL.

Pharmacogenomics. 2015;16(5):441-8. doi: 10.2217/pgs.15.10.

16.

HeatmapGenerator: high performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline.

Khomtchouk BB, Van Booven DJ, Wahlestedt C.

Source Code Biol Med. 2014 Dec 24;9(1):30. doi: 10.1186/s13029-014-0030-2. eCollection 2014.

17.

Identification of copy number variants through whole-exome sequencing in autosomal recessive nonsyndromic hearing loss.

Bademci G, Diaz-Horta O, Guo S, Duman D, Van Booven D, Foster J 2nd, Cengiz FB, Blanton S, Tekin M.

Genet Test Mol Biomarkers. 2014 Sep;18(9):658-61. doi: 10.1089/gtmb.2014.0121. Epub 2014 Jul 25.

18.

GEnomes Management Application (GEM.app): a new software tool for large-scale collaborative genome analysis.

Gonzalez MA, Lebrigio RF, Van Booven D, Ulloa RH, Powell E, Speziani F, Tekin M, Schüle R, Züchner S.

Hum Mutat. 2013 Jun;34(6):842-6. doi: 10.1002/humu.22305. Epub 2013 Apr 3.

19.

Whole Genome Sequencing and a New Bioinformatics Platform Allow for Rapid Gene Identification in D. melanogaster EMS Screens.

Gonzalez MA, Van Booven D, Hulme W, Ulloa RH, Lebrigio RF, Osterloh J, Logan M, Freeman M, Zuchner S.

Biology (Basel). 2012 Dec 5;1(3):766-77. doi: 10.3390/biology1030766.

20.

Loss-of-function DNA sequence variant in the CLCNKA chloride channel implicates the cardio-renal axis in interindividual heart failure risk variation.

Cappola TP, Matkovich SJ, Wang W, van Booven D, Li M, Wang X, Qu L, Sweitzer NK, Fang JC, Reilly MP, Hakonarson H, Nerbonne JM, Dorn GW 2nd.

Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2456-61. doi: 10.1073/pnas.1017494108. Epub 2011 Jan 19.

21.

RISC RNA sequencing for context-specific identification of in vivo microRNA targets.

Matkovich SJ, Van Booven DJ, Eschenbacher WH, Dorn GW 2nd.

Circ Res. 2011 Jan 7;108(1):18-26. doi: 10.1161/CIRCRESAHA.110.233528. Epub 2010 Oct 28.

22.

Association of an intronic, but not any exonic, FRMD4B sequence variant and heart failure.

Matkovich SJ, Van Booven DJ, Cappola TP, Dorn GW 2nd.

Clin Transl Sci. 2010 Aug;3(4):134-9. doi: 10.1111/j.1752-8062.2010.00220.x.

23.

Deep mRNA sequencing for in vivo functional analysis of cardiac transcriptional regulators: application to Galphaq.

Matkovich SJ, Zhang Y, Van Booven DJ, Dorn GW 2nd.

Circ Res. 2010 May 14;106(9):1459-67. doi: 10.1161/CIRCRESAHA.110.217513. Epub 2010 Apr 1.

24.

Cytochrome P450 2C9-CYP2C9.

Van Booven D, Marsh S, McLeod H, Carrillo MW, Sangkuhl K, Klein TE, Altman RB.

Pharmacogenet Genomics. 2010 Apr;20(4):277-81. doi: 10.1097/FPC.0b013e3283349e84. Review. No abstract available.

25.

Cardiac signaling genes exhibit unexpected sequence diversity in sporadic cardiomyopathy, revealing HSPB7 polymorphisms associated with disease.

Matkovich SJ, Van Booven DJ, Hindes A, Kang MY, Druley TE, Vallania FL, Mitra RD, Reilly MP, Cappola TP, Dorn GW 2nd.

J Clin Invest. 2010 Jan;120(1):280-9. doi: 10.1172/JCI39085. Epub 2009 Dec 14.

26.

Influence of ethnicity on pharmacogenetic variation in the Ghanaian population.

Yen-Revollo JL, Van Booven DJ, Peters EJ, Hoskins JM, Engen RM, Kannall HD, Ofori-Adjei D, McLeod HL, Marsh S.

Pharmacogenomics J. 2009 Dec;9(6):373-9. doi: 10.1038/tpj.2009.28. Epub 2009 Jun 23.

PMID:
19546880
27.

Reciprocal regulation of myocardial microRNAs and messenger RNA in human cardiomyopathy and reversal of the microRNA signature by biomechanical support.

Matkovich SJ, Van Booven DJ, Youker KA, Torre-Amione G, Diwan A, Eschenbacher WH, Dorn LE, Watson MA, Margulies KB, Dorn GW 2nd.

Circulation. 2009 Mar 10;119(9):1263-71. doi: 10.1161/CIRCULATIONAHA.108.813576. Epub 2009 Feb 23.

28.

The increasing complexity of mercaptopurine pharmacogenomics.

Marsh S, Van Booven DJ.

Clin Pharmacol Ther. 2009 Feb;85(2):139-41. doi: 10.1038/clpt.2008.219. Review.

PMID:
19151640
29.

Irinotecan pharmacogenetics: influence of pharmacodynamic genes.

Hoskins JM, Marcuello E, Altes A, Marsh S, Maxwell T, Van Booven DJ, Paré L, Culverhouse R, McLeod HL, Baiget M.

Clin Cancer Res. 2008 Mar 15;14(6):1788-96. doi: 10.1158/1078-0432.CCR-07-1472.

30.

Pharmacogenetically relevant polymorphisms in Portugal.

Oliveira E, Marsh S, van Booven DJ, Amorim A, Prata MJ, McLeod HL.

Pharmacogenomics. 2007 Jul;8(7):703-12. doi: 10.2217/14622416.8.7.703.

PMID:
18240903
31.

Identification of NR1I2 genetic variation using resequencing.

King CR, Xiao M, Yu J, Minton MR, Addleman NJ, Van Booven DJ, Kwok PY, McLeod HL, Marsh S.

Eur J Clin Pharmacol. 2007 Jun;63(6):547-54. Epub 2007 Apr 3.

PMID:
17404718
32.

Pyrosequencing genotype storage techniques.

Van Booven DJ.

Methods Mol Biol. 2007;373:177-86.

PMID:
17185766
33.

Ethnic differences in pharmacogenetically relevant genes.

Engen RM, Marsh S, Van Booven DJ, McLeod HL.

Curr Drug Targets. 2006 Dec;7(12):1641-8. Review.

PMID:
17168839
34.

Global pharmacogenetics: giving the genome to the masses.

Marsh S, Van Booven DJ, McLeod HL.

Pharmacogenomics. 2006 Jun;7(4):625-31. Review.

PMID:
16753009
35.

Polymorphism discovery in 51 chemotherapy pathway genes.

Freimuth RR, Xiao M, Marsh S, Minton M, Addleman N, Van Booven DJ, McLeod HL, Kwok PY.

Hum Mol Genet. 2005 Dec 1;14(23):3595-603. Epub 2005 Oct 20.

PMID:
16239245

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