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Items: 11

1.

Aneuploid acute myeloid leukemia exhibits a signature of genomic alterations in the cell cycle and protein degradation machinery.

Simonetti G, Padella A, do Valle IF, Fontana MC, Fonzi E, Bruno S, Baldazzi C, Guadagnuolo V, Manfrini M, Ferrari A, Paolini S, Papayannidis C, Marconi G, Franchini E, Zuffa E, Laginestra MA, Zanotti F, Astolfi A, Iacobucci I, Bernardi S, Sazzini M, Ficarra E, Hernandez JM, Vandenberghe P, Cools J, Bullinger L, Ottaviani E, Testoni N, Cavo M, Haferlach T, Castellani G, Remondini D, Martinelli G.

Cancer. 2019 Mar 1;125(5):712-725. doi: 10.1002/cncr.31837. Epub 2018 Nov 27.

2.

Network integration of multi-tumour omics data suggests novel targeting strategies.

do Valle ÍF, Menichetti G, Simonetti G, Bruno S, Zironi I, Durso DF, Mombach JCM, Martinelli G, Castellani G, Remondini D.

Nat Commun. 2018 Oct 30;9(1):4514. doi: 10.1038/s41467-018-06992-7.

3.

Integrated Molecular Characterization of Gastrointestinal Stromal Tumors (GIST) Harboring the Rare D842V Mutation in PDGFRA Gene.

Indio V, Astolfi A, Tarantino G, Urbini M, Patterson J, Nannini M, Saponara M, Gatto L, Santini D, do Valle IF, Castellani G, Remondini D, Fiorentino M, von Mehren M, Brandi G, Biasco G, Heinrich MC, Pantaleo MA.

Int J Mol Sci. 2018 Mar 4;19(3). pii: E732. doi: 10.3390/ijms19030732.

4.

Acceleration of leukocytes' epigenetic age as an early tumor and sex-specific marker of breast and colorectal cancer.

Durso DF, Bacalini MG, Sala C, Pirazzini C, Marasco E, Bonafé M, do Valle ÍF, Gentilini D, Castellani G, Faria AMC, Franceschi C, Garagnani P, Nardini C.

Oncotarget. 2017 Apr 4;8(14):23237-23245. doi: 10.18632/oncotarget.15573.

5.

Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data.

do Valle ÍF, Giampieri E, Simonetti G, Padella A, Manfrini M, Ferrari A, Papayannidis C, Zironi I, Garonzi M, Bernardi S, Delledonne M, Martinelli G, Remondini D, Castellani G.

BMC Bioinformatics. 2016 Nov 8;17(Suppl 12):341. doi: 10.1186/s12859-016-1190-7.

6.

Aberrant methylation patterns in colorectal cancer: a meta-analysis.

Durso DF, Bacalini MG, do Valle ÍF, Pirazzini C, Bonafé M, Castellani G, Faria AM, Franceschi C, Garagnani P, Nardini C.

Oncotarget. 2017 Feb 21;8(8):12820-12830. doi: 10.18632/oncotarget.14590.

7.

Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data.

Sala C, Vitali S, Giampieri E, do Valle ÌF, Remondini D, Garagnani P, Bersanelli M, Mosca E, Milanesi L, Castellani G.

BMC Bioinformatics. 2016 Jan 20;17 Suppl 2:16. doi: 10.1186/s12859-015-0858-8.

8.

Systems medicine of inflammaging.

Castellani GC, Menichetti G, Garagnani P, Giulia Bacalini M, Pirazzini C, Franceschi C, Collino S, Sala C, Remondini D, Giampieri E, Mosca E, Bersanelli M, Vitali S, Valle IF, Liò P, Milanesi L.

Brief Bioinform. 2016 May;17(3):527-40. doi: 10.1093/bib/bbv062. Epub 2015 Aug 24.

9.

Evidence of substantial recombination among Trypanosoma cruzi II strains from Minas Gerais.

Baptista Rde P, D'Ávila DA, Segatto M, do Valle ÍF, Franco GR, Valadares HM, Gontijo ED, Galvão LM, Pena SD, Chiari E, Machado CR, Macedo AM.

Infect Genet Evol. 2014 Mar;22:183-91. doi: 10.1016/j.meegid.2013.11.021. Epub 2013 Dec 1.

PMID:
24296011
10.

Comparative modeling of proteins: a method for engaging students' interest in bioinformatics tools.

Badotti F, Barbosa AS, Reis AL, do Valle IF, Ambrósio L, Bitar M.

Biochem Mol Biol Educ. 2014 Jan-Feb;42(1):68-78. doi: 10.1002/bmb.20721. Epub 2013 Oct 25.

11.

Molecular and biological characterization of Trypanosoma cruzi strains isolated from children from Jequitinhonha Valley, State of Minas Gerais, Brazil.

Silva JC, Assis GF, Oliveira MT, Valadares HM, Valle IF, Paiva NC, Martins HR, Lana Md.

Rev Soc Bras Med Trop. 2013 Jul-Aug;46(4):433-40. doi: 10.1590/0037-8682-0077-2013.

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