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Items: 13

1.

The impact of HER2 overexpression on the miRNA and circRNA transcriptomes in two breast cell lines and their vesicles.

Galli de Amorim M, Branco G, Valieris R, Tarcitano E, Tojal da Silva I, Ferreira de Araújo L, Noronha Nunes D, Dias-Neto E.

Pharmacogenomics. 2019 May;20(7):493-502. doi: 10.2217/pgs-2018-0182.

PMID:
31124410
2.

APOBEC-mediated DNA alterations: A possible new mechanism of carcinogenesis in EBV-positive gastric cancer.

Bobrovnitchaia I, Valieris R, Drummond RD, Lima JP, Freitas HC, Bartelli TF, de Amorim MG, Nunes DN, Dias-Neto E, da Silva IT.

Int J Cancer. 2019 May 15. doi: 10.1002/ijc.32411. [Epub ahead of print]

PMID:
31090066
3.

Identification of DNA mutations in gastric washes from gastric adenocarcinoma patients: Possible implications for liquid biopsies and patient follow-up.

Pizzi MP, Bartelli TF, Pelosof AG, Freitas HC, Begnami MD, de Abrantes LLS, Sztokfisz C, Valieris R, Knebel FH, Coelho LGV, da Costa WL Jr, Coimbra FJF, da Silva IT, de Amorim MG, Nunes DN, Dias-Neto E.

Int J Cancer. 2019 Aug 15;145(4):1090-1098. doi: 10.1002/ijc.32217. Epub 2019 Mar 12.

PMID:
30779121
4.

Utility of trio-based exome sequencing in the elucidation of the genetic basis of isolated syndromic intellectual disability: illustrative cases.

Carneiro TN, Krepischi AC, Costa SS, Tojal da Silva I, Vianna-Morgante AM, Valieris R, Ezquina SA, Bertola DR, Otto PA, Rosenberg C.

Appl Clin Genet. 2018 Aug 22;11:93-98. doi: 10.2147/TACG.S165799. eCollection 2018.

5.

A non-functional galanin receptor-2 in a multiple sclerosis patient.

Garcia-Rosa S, Trivella DB, Marques VD, Serafim RB, Pereira JG, Lorenzi JC, Molfetta GA, Christo PP, Olival GS, Marchitto VB, Brum DG, Sabedot TS, Noushmehr H, Farias AS, Santos LM, Nogueira-Machado JA, Souza JE, Romano CM, Conde RM, Santos AC, Guerreiro CT, Schreuder WH, Gleber-Netto FO, Amorim M, Valieris R, Silva ITD, Silva WA Jr, Nunes DN, Oliveira PS, Valente V, Arruda MA, Hill SJ, Barreira AA, Dias-Neto E.

Pharmacogenomics J. 2019 Feb;19(1):72-82. doi: 10.1038/s41397-018-0032-6. Epub 2018 Aug 22.

PMID:
30131588
6.

Bioconda: sustainable and comprehensive software distribution for the life sciences.

Grüning B, Dale R, Sjödin A, Chapman BA, Rowe J, Tomkins-Tinch CH, Valieris R, Köster J; Bioconda Team.

Nat Methods. 2018 Jul;15(7):475-476. doi: 10.1038/s41592-018-0046-7. No abstract available.

PMID:
29967506
7.

Complex Landscape of Germline Variants in Brazilian Patients With Hereditary and Early Onset Breast Cancer.

Torrezan GT, de Almeida FGDSR, Figueiredo MCP, Barros BDF, de Paula CAA, Valieris R, de Souza JES, Ramalho RF, da Silva FCC, Ferreira EN, de Nóbrega AF, Felicio PS, Achatz MI, de Souza SJ, Palmero EI, Carraro DM.

Front Genet. 2018 May 7;9:161. doi: 10.3389/fgene.2018.00161. eCollection 2018.

8.

Clonal CD4+ T cells in the HIV-1 latent reservoir display a distinct gene profile upon reactivation.

Cohn LB, da Silva IT, Valieris R, Huang AS, Lorenzi JCC, Cohen YZ, Pai JA, Butler AL, Caskey M, Jankovic M, Nussenzweig MC.

Nat Med. 2018 May;24(5):604-609. doi: 10.1038/s41591-018-0017-7. Epub 2018 Apr 23.

9.

Exome sequencing of multiple-sclerosis patients and their unaffected first-degree relatives.

Garcia-Rosa S, de Amorim MG, Valieris R, Marques VD, Lorenzi JCC, Toller VB, do Olival GS, da Silva Júnior WA, da Silva IT, Barreira AA, Nunes DN, Dias-Neto E.

BMC Res Notes. 2017 Dec 12;10(1):735. doi: 10.1186/s13104-017-3072-0.

10.

A total transcriptome profiling method for plasma-derived extracellular vesicles: applications for liquid biopsies.

Amorim MG, Valieris R, Drummond RD, Pizzi MP, Freitas VM, Sinigaglia-Coimbra R, Calin GA, Pasqualini R, Arap W, Silva IT, Dias-Neto E, Nunes DN.

Sci Rep. 2017 Oct 31;7(1):14395. doi: 10.1038/s41598-017-14264-5.

11.

Human dendritic cells (DCs) are derived from distinct circulating precursors that are precommitted to become CD1c+ or CD141+ DCs.

Breton G, Zheng S, Valieris R, Tojal da Silva I, Satija R, Nussenzweig MC.

J Exp Med. 2016 Dec 12;213(13):2861-2870. Epub 2016 Nov 18.

12.

signeR: an empirical Bayesian approach to mutational signature discovery.

Rosales RA, Drummond RD, Valieris R, Dias-Neto E, da Silva IT.

Bioinformatics. 2017 Jan 1;33(1):8-16. doi: 10.1093/bioinformatics/btw572. Epub 2016 Sep 1.

PMID:
27591080
13.

S-score: a scoring system for the identification and prioritization of predicted cancer genes.

de Souza JE, Fonseca AF, Valieris R, Carraro DM, Wang JY, Kolodner RD, de Souza SJ.

PLoS One. 2014 Apr 7;9(4):e94147. doi: 10.1371/journal.pone.0094147. eCollection 2014.

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