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Items: 1 to 50 of 661

1.

Understanding oncogenicity of cancer driver genes and mutations in the cancer genomics era.

Porta-Pardo E, Valencia A, Godzik A.

FEBS Lett. 2020 Apr 1. doi: 10.1002/1873-3468.13781. [Epub ahead of print] Review.

PMID:
32239503
2.

Evolution of antibiotic cross-resistance and collateral sensitivity in Staphylococcus epidermidis using the mutant prevention concentration and the mutant selection window.

Lozano-Huntelman NA, Singh N, Valencia A, Mira P, Sakayan M, Boucher I, Tang S, Brennan K, Gianvecchio C, Fitz-Gibbon S, Yeh P.

Evol Appl. 2020 Feb 25;13(4):808-823. doi: 10.1111/eva.12903. eCollection 2020 Apr.

3.

Comparative nitrogen removal via microbial ecology between soil and green sorption media in a rapid infiltration basin for co-disposal of stormwater and wastewater.

Wen D, Valencia A, Ordonez D, Chang NB, Wanielista M.

Environ Res. 2020 May;184:109338. doi: 10.1016/j.envres.2020.109338. Epub 2020 Mar 3.

PMID:
32172072
4.

Factor IX alteration p.Arg338Gln (FIX Shanghai) potentiates FIX clotting activity and causes thrombosis.

Wu W, Xiao L, Wu X, Xie X, Li P, Chen C, Zheng Z, Ai J, Valencia A, Dong B, Ding Q, Dong B, Wang X.

Haematologica. 2020 Feb 20. pii: haematol.2019.216713. doi: 10.3324/haematol.2019.216713. [Epub ahead of print] No abstract available.

5.

Safety assessment of spine MRI in deep brain stimulation patients.

Boutet A, Elias GJB, Gramer R, Neudorfer C, Germann J, Naheed A, Bennett N, Li B, Gwun D, Chow CT, Maciel R, Valencia A, Fasano A, Munhoz RP, Foltz W, Mikulis D, Hancu I, Kalia SK, Hodaie M, Kucharczyk W, Lozano AM.

J Neurosurg Spine. 2020 Feb 14:1-11. doi: 10.3171/2019.12.SPINE191241. [Epub ahead of print]

PMID:
32059193
6.

Intergenerational Influence of Antenatal Betamethasone on Growth, Growth Factors, and Neurological Outcomes in Rats.

Abrantes MA, Valencia AM, Bany-Mohammed F, Aranda JV, Beharry KD.

Reprod Sci. 2020 Jan;27(1):418-431. doi: 10.1007/s43032-019-00073-w. Epub 2020 Jan 1.

PMID:
32046399
7.

Development of a Low-Cost UV-Vis Spectrophotometer and Its Application for the Detection of Mercuric Ions Assisted by Chemosensors.

González-Morales D, Valencia A, Díaz-Nuñez A, Fuentes-Estrada M, López-Santos O, García-Beltrán O.

Sensors (Basel). 2020 Feb 8;20(3). pii: E906. doi: 10.3390/s20030906.

8.

Pathway and network analysis of more than 2500 whole cancer genomes.

Reyna MA, Haan D, Paczkowska M, Verbeke LPC, Vazquez M, Kahraman A, Pulido-Tamayo S, Barenboim J, Wadi L, Dhingra P, Shrestha R, Getz G, Lawrence MS, Pedersen JS, Rubin MA, Wheeler DA, Brunak S, Izarzugaza JMG, Khurana E, Marchal K, von Mering C, Sahinalp SC, Valencia A; PCAWG Drivers and Functional Interpretation Working Group, Reimand J, Stuart JM, Raphael BJ; PCAWG Consortium.

Nat Commun. 2020 Feb 5;11(1):729. doi: 10.1038/s41467-020-14367-0.

9.

Copper impact on enzymatic cascade and extracellular sequestration via distinctive pathways of nitrogen removal in green sorption media at varying stormwater field conditions.

Wen D, Ordonez D, Valencia A, McKenna AM, Chang NB.

Chemosphere. 2020 Mar;243:125399. doi: 10.1016/j.chemosphere.2019.125399. Epub 2019 Nov 20.

PMID:
31995869
10.

Ab initio modelling of local interfaces in doped organic semiconductors.

Valencia AM, Guerrini M, Cocchi C.

Phys Chem Chem Phys. 2020 Feb 14;22(6):3527-3538. doi: 10.1039/c9cp06655a. Epub 2020 Jan 29.

PMID:
31994551
11.

Evaluation of green sorption media blanket filters for nitrogen removal in a stormwater retention basin at varying groundwater conditions in a karst environment.

Wen D, Valencia A, Lustosa E, Ordonez D, Shokri M, Gao Y, Rice N, Kibler K, Chang NB, Wanielista MP.

Sci Total Environ. 2020 Jun 1;719:134826. doi: 10.1016/j.scitotenv.2019.134826. Epub 2019 Nov 22.

PMID:
31879034
12.

Transcription pattern of reproduction relevant genes along the brain-pituitary-gonad axis of female, male and intersex thicklip grey mullets, Chelon labrosus, from a polluted harbor.

Valencia A, Andrieu J, Nzioka A, Cancio I, Ortiz-Zarragoitia M.

Gen Comp Endocrinol. 2020 Feb 1;287:113339. doi: 10.1016/j.ygcen.2019.113339. Epub 2019 Nov 21.

PMID:
31759976
13.

Recurrent SMARCB1 Mutations Reveal a Nucleosome Acidic Patch Interaction Site That Potentiates mSWI/SNF Complex Chromatin Remodeling.

Valencia AM, Collings CK, Dao HT, St Pierre R, Cheng YC, Huang J, Sun ZY, Seo HS, Mashtalir N, Comstock DE, Bolonduro O, Vangos NE, Yeoh ZC, Dornon MK, Hermawan C, Barrett L, Dhe-Paganon S, Woolf CJ, Muir TW, Kadoch C.

Cell. 2019 Nov 27;179(6):1342-1356.e23. doi: 10.1016/j.cell.2019.10.044. Epub 2019 Nov 20.

PMID:
31759698
14.

Combining Dispersion Modeling and Monitoring Data for Community-Scale Air Quality Characterization.

Isakov V, Arunachalam S, Baldauf R, Breen M, Deshmukh P, Hawkins A, Kimbrough S, Krabbe S, Naess B, Serre M, Valencia A.

Atmosphere (Basel). 2019;10(10):1-610. doi: 10.3390/atmos10100610.

15.

On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models.

Ponce-de-León M, Apaolaza I, Valencia A, Planes FJ.

Bioinformatics. 2020 Mar 1;36(6):1986-1988. doi: 10.1093/bioinformatics/btz832.

PMID:
31722383
16.

Patient Dossier: Healthcare queries over distributed resources.

Vazquez M, Valencia A.

PLoS Comput Biol. 2019 Oct 17;15(10):e1007291. doi: 10.1371/journal.pcbi.1007291. eCollection 2019 Oct.

17.

A new bottom-up emissions estimation approach for aircraft sources in support of air quality modelling for community-scale assessments around airports.

Arunachalam S, Naess B, Seppanen C, Valencia A, Brandmeyer JE, Venkatram A, Weil J, Isakov V, Barzyk T.

Int J Environ Pollut. 2019;65(123):43-58. doi: 10.1504/IJEP.2019.101832.

18.

Author Correction: Leveraging European infrastructures to access 1 million human genomes by 2022.

Saunders G, Baudis M, Becker R, Beltran S, Béroud C, Birney E, Brooksbank C, Brunak S, Van den Bulcke M, Drysdale R, Capella-Gutierrez S, Flicek P, Florindi F, Goodhand P, Gut I, Heringa J, Holub P, Hooyberghs J, Juty N, Keane TM, Korbel JO, Lappalainen I, Leskosek B, Matthijs G, Mayrhofer MT, Metspalu A, Navarro A, Newhouse S, Nyrönen T, Page A, Persson B, Palotie A, Parkinson H, Rambla J, Salgado D, Steinfelder E, Swertz MA, Valencia A, Varma S, Blomberg N, Scollen S.

Nat Rev Genet. 2019 Nov;20(11):702. doi: 10.1038/s41576-019-0178-3.

PMID:
31520075
19.

Role of error-prone DNA polymerases in spontaneous mutagenesis in Caulobacter crescentus.

Valencia AO, Braz VS, Magalhães M, Galhardo RS.

Genet Mol Biol. 2020 Mar 9;43(1):e20180283. doi: 10.1590/1678-4685-GMB-2018-0283. eCollection 2020.

20.

Leveraging European infrastructures to access 1 million human genomes by 2022.

Saunders G, Baudis M, Becker R, Beltran S, Béroud C, Birney E, Brooksbank C, Brunak S, Van den Bulcke M, Drysdale R, Capella-Gutierrez S, Flicek P, Florindi F, Goodhand P, Gut I, Heringa J, Holub P, Hooyberghs J, Juty N, Keane TM, Korbel JO, Lappalainen I, Leskosek B, Matthijs G, Mayrhofer MT, Metspalu A, Navarro A, Newhouse S, Nyrönen T, Page A, Persson B, Palotie A, Parkinson H, Rambla J, Salgado D, Steinfelder E, Swertz MA, Valencia A, Varma S, Blomberg N, Scollen S.

Nat Rev Genet. 2019 Nov;20(11):693-701. doi: 10.1038/s41576-019-0156-9. Epub 2019 Aug 27. Review. Erratum in: Nat Rev Genet. 2019 Sep 13;:.

PMID:
31455890
21.

Development of pipette tip-based poly(methacrylic acid-co-ethylene glycol dimethacrylate) monolith for the extraction of drugs of abuse from oral fluid samples.

Sorribes-Soriano A, Valencia A, Esteve-Turrillas FA, Armenta S, Herrero-Martínez JM.

Talanta. 2019 Dec 1;205:120158. doi: 10.1016/j.talanta.2019.120158. Epub 2019 Jul 16.

PMID:
31450423
22.

The bio.tools registry of software tools and data resources for the life sciences.

Ison J, Ienasescu H, Chmura P, Rydza E, Ménager H, Kalaš M, Schwämmle V, Grüning B, Beard N, Lopez R, Duvaud S, Stockinger H, Persson B, Vařeková RS, Raček T, Vondrášek J, Peterson H, Salumets A, Jonassen I, Hooft R, Nyrönen T, Valencia A, Capella S, Gelpí J, Zambelli F, Savakis B, Leskošek B, Rapacki K, Blanchet C, Jimenez R, Oliveira A, Vriend G, Collin O, van Helden J, Løngreen P, Brunak S.

Genome Biol. 2019 Aug 12;20(1):164. doi: 10.1186/s13059-019-1772-6.

23.

Weight Matters-Factors Influencing Eating Behaviors of Vulnerable Women.

Vizcarra M, Palomino AM, Iglesias L, Valencia A, Gálvez Espinoza P, Schwingel A.

Nutrients. 2019 Aug 6;11(8). pii: E1809. doi: 10.3390/nu11081809.

24.

A ten-year study of immunogenicity and safety of the AS04-HPV-16/18 vaccine in adolescent girls aged 10-14 years.

Schwarz TF, Huang LM, Valencia A, Panzer F, Chiu CH, Decreux A, Poncelet S, Karkada N, Folschweiller N, Lin L, Dubin G, Struyf F.

Hum Vaccin Immunother. 2019;15(7-8):1970-1979. doi: 10.1080/21645515.2019.1625644. Epub 2019 Jul 17.

25.

Molecular Inverse Comorbidity between Alzheimer's Disease and Lung Cancer: New Insights from Matrix Factorization.

Greco A, Sanchez Valle J, Pancaldi V, Baudot A, Barillot E, Caselle M, Valencia A, Zinovyev A, Cantini L.

Int J Mol Sci. 2019 Jun 26;20(13). pii: E3114. doi: 10.3390/ijms20133114.

26.

Next generation community assessment of biomedical entity recognition web servers: metrics, performance, interoperability aspects of BeCalm.

Pérez-Pérez M, Pérez-Rodríguez G, Blanco-Míguez A, Fdez-Riverola F, Valencia A, Krallinger M, Lourenço A.

J Cheminform. 2019 Jun 24;11(1):42. doi: 10.1186/s13321-019-0363-6.

27.

Association of Anorexia Nervosa With Risk of Cancer: A Systematic Review and Meta-analysis.

Catalá-López F, Forés-Martos J, Driver JA, Page MJ, Hutton B, Ridao M, Alonso-Arroyo A, Macías Saint-Gerons D, Gènova-Maleras R, Valderas JM, Vieta E, Valencia A, Tabarés-Seisdedos R.

JAMA Netw Open. 2019 Jun 5;2(6):e195313. doi: 10.1001/jamanetworkopen.2019.5313.

28.

vulcanSpot: a tool to prioritize therapeutic vulnerabilities in cancer.

Perales-Patón J, Di Domenico T, Fustero-Torre C, Piñeiro-Yáñez E, Carretero-Puche C, Tejero H, Valencia A, Gómez-López G, Al-Shahrour F.

Bioinformatics. 2019 Nov 1;35(22):4846-4848. doi: 10.1093/bioinformatics/btz465.

29.

Bariatric/Metabolic Surgery in Latin America.

Herrera MF, Valencia A, Cohen R.

Am J Gastroenterol. 2019 Jun;114(6):852-853. doi: 10.14309/ajg.0000000000000269. Review. No abstract available.

PMID:
31107687
30.

Identification of Factors Associated With Variation in US County-Level Obesity Prevalence Rates Using Epidemiologic vs Machine Learning Models.

Scheinker D, Valencia A, Rodriguez F.

JAMA Netw Open. 2019 Apr 5;2(4):e192884. doi: 10.1001/jamanetworkopen.2019.2884.

31.

Optic Nerve Lipidomics Reveal Impaired Glucosylsphingosine Lipids Pathway in Glaucoma.

Chauhan MZ, Valencia AK, Piqueras MC, Enriquez-Algeciras M, Bhattacharya SK.

Invest Ophthalmol Vis Sci. 2019 Apr 1;60(5):1789-1798. doi: 10.1167/iovs.18-25802.

32.

Transcriptomic metaanalyses of autistic brains reveals shared gene expression and biological pathway abnormalities with cancer.

Forés-Martos J, Catalá-López F, Sánchez-Valle J, Ibáñez K, Tejero H, Palma-Gudiel H, Climent J, Pancaldi V, Fañanás L, Arango C, Parellada M, Baudot A, Vogt D, Rubenstein JL, Valencia A, Tabarés-Seisdedos R.

Mol Autism. 2019 Apr 8;10:17. doi: 10.1186/s13229-019-0262-8. eCollection 2019.

33.

Combined antenatal and postnatal steroid effects on fetal and postnatal growth, and neurological outcomes in neonatal rats.

Abrantes MA, Valencia AM, Bany-Mohammed F, Aranda JV, Beharry KD.

Am J Transl Res. 2019 Mar 15;11(3):1697-1710. eCollection 2019.

34.

Big data analytics for personalized medicine.

Cirillo D, Valencia A.

Curr Opin Biotechnol. 2019 Aug;58:161-167. doi: 10.1016/j.copbio.2019.03.004. Epub 2019 Apr 6. Review.

35.

Systemic administration of a fibroblast growth factor receptor 1 agonist rescues the cognitive deficit in aged socially isolated rats.

Pereda-Pérez I, Valencia A, Baliyan S, Núñez Á, Sanz-García A, Zamora B, Rodríguez-Fernández R, Esteban JA, Venero C.

Neurobiol Aging. 2019 Jun;78:155-165. doi: 10.1016/j.neurobiolaging.2019.02.011. Epub 2019 Feb 20.

PMID:
30928883
36.

Characterization and Pathogenicity of Botryosphaeriaceae Species Obtained from Avocado Trees with Branch Canker and Dieback and from Avocado Fruit with Stem End Rot in Chile.

Valencia AL, Gil PM, Latorre BA, Rosales IM.

Plant Dis. 2019 May;103(5):996-1005. doi: 10.1094/PDIS-07-18-1131-RE. Epub 2019 Mar 6.

PMID:
30840843
37.

Approaches to Establish Extracardiac Total Cavopulmonary Connections in Animal Models-A Review.

Granegger M, Valencia A, Quandt D, Dave H, Kretschmar O, Hübler M, Schweiger M.

World J Pediatr Congenit Heart Surg. 2019 Jan;10(1):81-89. doi: 10.1177/2150135118802788. Review.

PMID:
30799726
38.

Variation in Mutant Prevention Concentrations.

Gianvecchio C, Lozano NA, Henderson C, Kalhori P, Bullivant A, Valencia A, Su L, Bello G, Wong M, Cook E, Fuller L, Neal JB 3rd, Yeh PJ.

Front Microbiol. 2019 Jan 31;10:42. doi: 10.3389/fmicb.2019.00042. eCollection 2019.

39.

Reviewer-coerced citation: case report, update on journal policy and suggestions for future prevention.

Wren JD, Valencia A, Kelso J.

Bioinformatics. 2019 Sep 15;35(18):3217-3218. doi: 10.1093/bioinformatics/btz071. No abstract available.

40.

The Impact of Ethnicity on Metabolic Outcomes After Bariatric Surgery.

Valencia A, Garcia LC, Morton J.

J Surg Res. 2019 Apr;236:345-351. doi: 10.1016/j.jss.2018.09.061. Epub 2019 Jan 5.

PMID:
30694776
41.

Assessment of source contribution to air quality in an urban area close to a harbor: Case-study in Porto, Portugal.

Sorte S, Arunachalam S, Naess B, Seppanen C, Rodrigues V, Valencia A, Borrego C, Monteiro A.

Sci Total Environ. 2019 Apr 20;662:347-360. doi: 10.1016/j.scitotenv.2019.01.185. Epub 2019 Jan 16.

PMID:
30690369
42.

Intronic CNVs and gene expression variation in human populations.

Rigau M, Juan D, Valencia A, Rico D.

PLoS Genet. 2019 Jan 24;15(1):e1007902. doi: 10.1371/journal.pgen.1007902. eCollection 2019 Jan.

43.

Effectiveness of SIESTA on Objective and Subjective Metrics of Nighttime Hospital Sleep Disruptors.

Arora VM, Machado N, Anderson SL, Desai N, Marsack W, Blossomgame S, Tuvilleja A, Ramos J, Francisco MA, LaFond C, Leung EK, Valencia A, Martin SK, Meltzer DO, Farnan JM, Balachandran J, Knutson KL, Mokhlesi B.

J Hosp Med. 2019 Jan;14(1):38-41. doi: 10.12788/jhm.3091.

PMID:
30667409
44.

Chromatin regulatory mechanisms and therapeutic opportunities in cancer.

Valencia AM, Kadoch C.

Nat Cell Biol. 2019 Feb;21(2):152-161. doi: 10.1038/s41556-018-0258-1. Epub 2019 Jan 2. Review.

45.

Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.

Vergara C, Thio CL, Johnson E, Kral AH, O'Brien TR, Goedert JJ, Mangia A, Piazzolla V, Mehta SH, Kirk GD, Kim AY, Lauer GM, Chung RT, Cox AL, Peters MG, Khakoo SI, Alric L, Cramp ME, Donfield SM, Edlin BR, Busch MP, Alexander G, Rosen HR, Murphy EL, Latanich R, Wojcik GL, Taub MA, Valencia A, Thomas DL, Duggal P.

Gastroenterology. 2019 Apr;156(5):1496-1507.e7. doi: 10.1053/j.gastro.2018.12.014. Epub 2018 Dec 26.

46.

Induced in vivo knockdown of the Brca1 gene in skeletal muscle results in skeletal muscle weakness.

Tarpey MD, Valencia AP, Jackson KC, Amorese AJ, Balestrieri NP, Renegar RH, Pratt SJP, Ryan TE, McClung JM, Lovering RM, Spangenburg EE.

J Physiol. 2019 Feb;597(3):869-887. doi: 10.1113/JP276863. Epub 2018 Dec 16.

47.

["We eat in this way because…". Understanding eating behaviors of Chilean women of low socioeconomic status].

Gálvez-Espinoza P, Iglesias-Vejar L, Vizcarra-Catalán M, Palomino AM, Valencia A, Schwingel A.

Rev Med Chil. 2018 Aug;146(8):882-889. doi: 10.4067/s0034-98872018000800882. Spanish.

48.

Reactive Oxygen Species, Biomarkers of Microvascular Maturation and Alveolarization, and Antioxidants in Oxidative Lung Injury.

Valencia AM, Abrantes MA, Hasan J, Aranda JV, Beharry KD.

React Oxyg Species (Apex). 2018 Nov;6(18):373-388. doi: 10.20455/ros.2018.867.

49.

BIOLITMAP: a web-based geolocated, temporal and thematic visualization of the evolution of bioinformatics publications.

Bazaga A, Valencia A, JoséRementeria M.

Bioinformatics. 2019 Jul 15;35(14):2518-2520. doi: 10.1093/bioinformatics/bty967.

50.

A non-canonical SWI/SNF complex is a synthetic lethal target in cancers driven by BAF complex perturbation.

Michel BC, D'Avino AR, Cassel SH, Mashtalir N, McKenzie ZM, McBride MJ, Valencia AM, Zhou Q, Bocker M, Soares LMM, Pan J, Remillard DI, Lareau CA, Zullow HJ, Fortoul N, Gray NS, Bradner JE, Chan HM, Kadoch C.

Nat Cell Biol. 2018 Dec;20(12):1410-1420. doi: 10.1038/s41556-018-0221-1. Epub 2018 Nov 5.

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