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Characterization and Pathogenicity of Botryosphaeriaceae Species Obtained from Avocado Trees with Branch Canker and Dieback and from Avocado Fruit with Stem End Rot in Chile.

Valencia AL, Gil PM, Latorre BA, Rosales IM.

Plant Dis. 2019 Mar 6:PDIS07181131RE. doi: 10.1094/PDIS-07-18-1131-RE. [Epub ahead of print]


Approaches to Establish Extracardiac Total Cavopulmonary Connections in Animal Models-A Review.

Granegger M, Valencia A, Quandt D, Dave H, Kretschmar O, Hübler M, Schweiger M.

World J Pediatr Congenit Heart Surg. 2019 Jan;10(1):81-89. doi: 10.1177/2150135118802788.


Variation in Mutant Prevention Concentrations.

Gianvecchio C, Lozano NA, Henderson C, Kalhori P, Bullivant A, Valencia A, Su L, Bello G, Wong M, Cook E, Fuller L, Neal JB 3rd, Yeh PJ.

Front Microbiol. 2019 Jan 31;10:42. doi: 10.3389/fmicb.2019.00042. eCollection 2019.


Reviewer-coerced citation: Case report, update on journal policy, and suggestions for future prevention.

Wren JD, Valencia A, Kelso J.

Bioinformatics. 2019 Jan 30. doi: 10.1093/bioinformatics/btz071. [Epub ahead of print] No abstract available.


The Impact of Ethnicity on Metabolic Outcomes After Bariatric Surgery.

Valencia A, Garcia LC, Morton J.

J Surg Res. 2019 Apr;236:345-351. doi: 10.1016/j.jss.2018.09.061. Epub 2019 Jan 5.


Assessment of source contribution to air quality in an urban area close to a harbor: Case-study in Porto, Portugal.

Sorte S, Arunachalam S, Naess B, Seppanen C, Rodrigues V, Valencia A, Borrego C, Monteiro A.

Sci Total Environ. 2019 Apr 20;662:347-360. doi: 10.1016/j.scitotenv.2019.01.185. Epub 2019 Jan 16.


Intronic CNVs and gene expression variation in human populations.

Rigau M, Juan D, Valencia A, Rico D.

PLoS Genet. 2019 Jan 24;15(1):e1007902. doi: 10.1371/journal.pgen.1007902. eCollection 2019 Jan.


Effectiveness of SIESTA on Objective and Subjective Metrics of Nighttime Hospital Sleep Disruptors.

Arora VM, Machado N, Anderson SL, Desai N, Marsack W, Blossomgame S, Tuvilleja A, Ramos J, Francisco MA, LaFond C, Leung EK, Valencia A, Martin SK, Meltzer DO, Farnan JM, Balachandran J, Knutson KL, Mokhlesi B.

J Hosp Med. 2019 Jan;14(1):38-41. doi: 10.12788/jhm.3091.


Chromatin regulatory mechanisms and therapeutic opportunities in cancer.

Valencia AM, Kadoch C.

Nat Cell Biol. 2019 Feb;21(2):152-161. doi: 10.1038/s41556-018-0258-1. Epub 2019 Jan 2. Review.


Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.

Vergara C, Thio CL, Johnson E, Kral AH, O'Brien TR, Goedert JJ, Mangia A, Piazzolla V, Mehta SH, Kirk GD, Kim AY, Lauer GM, Chung RT, Cox AL, Peters MG, Khakoo SI, Alric L, Cramp ME, Donfield SM, Edlin BR, Busch MP, Alexander G, Rosen HR, Murphy EL, Latanich R, Wojcik GL, Taub MA, Valencia A, Thomas DL, Duggal P.

Gastroenterology. 2018 Dec 26. pii: S0016-5085(18)35421-0. doi: 10.1053/j.gastro.2018.12.014. [Epub ahead of print]


Induced in vivo knockdown of the Brca1 gene in skeletal muscle results in skeletal muscle weakness.

Tarpey MD, Valencia AP, Jackson KC, Amorese AJ, Balestrieri NP, Renegar RH, Pratt SJP, Ryan TE, McClung JM, Lovering RM, Spangenburg EE.

J Physiol. 2019 Feb;597(3):869-887. doi: 10.1113/JP276863. Epub 2018 Dec 16.


["We eat in this way because…". Understanding eating behaviors of Chilean women of low socioeconomic status].

Gálvez-Espinoza P, Iglesias-Vejar L, Vizcarra-Catalán M, Palomino AM, Valencia A, Schwingel A.

Rev Med Chil. 2018 Aug;146(8):882-889. doi: 10.4067/s0034-98872018000800882. Spanish.


Reactive Oxygen Species, Biomarkers of Microvascular Maturation and Alveolarization, and Antioxidants in Oxidative Lung Injury.

Valencia AM, Abrantes MA, Hasan J, Aranda JV, Beharry KD.

React Oxyg Species (Apex). 2018 Nov;6(18):373-388. doi: 10.20455/ros.2018.867.


BIOLITMAP: a web-based geolocated, temporal and thematic visualization of the evolution of bioinformatics publications.

Bazaga A, Valencia A, Rementeria-Núñez MJ.

Bioinformatics. 2018 Dec 5. doi: 10.1093/bioinformatics/bty967. [Epub ahead of print]


A non-canonical SWI/SNF complex is a synthetic lethal target in cancers driven by BAF complex perturbation.

Michel BC, D'Avino AR, Cassel SH, Mashtalir N, McKenzie ZM, McBride MJ, Valencia AM, Zhou Q, Bocker M, Soares LMM, Pan J, Remillard DI, Lareau CA, Zullow HJ, Fortoul N, Gray NS, Bradner JE, Chan HM, Kadoch C.

Nat Cell Biol. 2018 Dec;20(12):1410-1420. doi: 10.1038/s41556-018-0221-1. Epub 2018 Nov 5.


Modular Organization and Assembly of SWI/SNF Family Chromatin Remodeling Complexes.

Mashtalir N, D'Avino AR, Michel BC, Luo J, Pan J, Otto JE, Zullow HJ, McKenzie ZM, Kubiak RL, St Pierre R, Valencia AM, Poynter SJ, Cassel SH, Ranish JA, Kadoch C.

Cell. 2018 Nov 15;175(5):1272-1288.e20. doi: 10.1016/j.cell.2018.09.032. Epub 2018 Oct 18.


DNA methylation profiling of hepatosplenic T-cell lymphoma.

Bergmann AK, Fataccioli V, Castellano G, Martin-Garcia N, Pelletier L, Ammerpohl O, Bergmann J, Bhat J, Pau ECS, Martín-Subero JI, Moffitt AB, Valencia A, Oberg HH, Wesch D, Jayne S, Dyer MJS, Kabelitz D, Gaulard P, Siebert R.

Haematologica. 2019 Mar;104(3):e104-e107. doi: 10.3324/haematol.2018.196196. Epub 2018 Oct 18. No abstract available.


Correction to: Phase 2 Open-Label Trial Investigating Percutaneous Laser Ablation for Treatment of Early-Stage Breast Cancer: MRI, Pathology, and Outcome Correlations.

Schwartzberg B, Lewin J, Abdelatif O, Bernard J, Bu-Ali H, Cawthorn S, Chen-Seetoo M, Feldman S, Govindarajulu S, Jones L, Juette A, Kavia S, Maganini R, Pain S, Shere M, Shriver C, Smith S, Valencia A, Whitacre E, Whitney R.

Ann Surg Oncol. 2018 Dec;25(Suppl 3):998. doi: 10.1245/s10434-018-6861-3.


Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils.

Grassi L, Pourfarzad F, Ullrich S, Merkel A, Were F, Carrillo-de-Santa-Pau E, Yi G, Hiemstra IH, Tool ATJ, Mul E, Perner J, Janssen-Megens E, Berentsen K, Kerstens H, Habibi E, Gut M, Yaspo ML, Linser M, Lowy E, Datta A, Clarke L, Flicek P, Vingron M, Roos D, van den Berg TK, Heath S, Rico D, Frontini M, Kostadima M, Gut I, Valencia A, Ouwehand WH, Stunnenberg HG, Martens JHA, Kuijpers TW.

Cell Rep. 2018 Sep 4;24(10):2784-2794. doi: 10.1016/j.celrep.2018.08.018.


Dose response effects of postnatal hydrocortisone on growth and growth factors in the neonatal rat.

Abrantes MA, Valencia AM, Bany-Mohammed F, Aranda JV, Beharry KD.

Steroids. 2018 Dec;140:1-10. doi: 10.1016/j.steroids.2018.08.003. Epub 2018 Aug 22.


Phase 2 Open-Label Trial Investigating Percutaneous Laser Ablation for Treatment of Early-Stage Breast Cancer: MRI, Pathology, and Outcome Correlations.

Schwartzberg B, Lewin J, Abdelatif O, Bernard J, Bu-Ali H, Cawthorn S, Chen-Seetoo M, Feldman S, Govindarajulu S, Jones L, Juette A, Kavia S, Maganini R, Pain S, Shere M, Shriver C, Smith S, Valencia A, Whitacre E, Whitney R.

Ann Surg Oncol. 2018 Oct;25(10):2958-2964. doi: 10.1245/s10434-018-6623-2. Epub 2018 Jul 9. Erratum in: Ann Surg Oncol. 2018 Oct 8;:.


Germline variation in the oxidative DNA repair genes NUDT1 and OGG1 is not associated with hereditary colorectal cancer or polyposis.

Mur P, Jemth AS, Bevc L, Amaral N, Navarro M, Valdés-Mas R, Pons T, Aiza G, Urioste M, Valencia A, Lázaro C, Moreno V, Puente XS, Stenmark P, Warpman-Berglund U, Capellá G, Helleday T, Valle L.

Hum Mutat. 2018 Sep;39(9):1214-1225. doi: 10.1002/humu.23564. Epub 2018 Jul 4.


PanDrugs: a novel method to prioritize anticancer drug treatments according to individual genomic data.

Piñeiro-Yáñez E, Reboiro-Jato M, Gómez-López G, Perales-Patón J, Troulé K, Rodríguez JM, Tejero H, Shimamura T, López-Casas PP, Carretero J, Valencia A, Hidalgo M, Glez-Peña D, Al-Shahrour F.

Genome Med. 2018 May 31;10(1):41. doi: 10.1186/s13073-018-0546-1.


Development and Evaluation of the R-LINE Model Algorithms to Account for Chemical Transformation in the Near-road Environment.

Valencia A, Venkatram A, Heist D, Carruthers D, Arunachalam S.

Transp Res D Transp Environ. 2018;59:464-477. doi: 10.1016/j.trd.2018.01.028.


Fatty Infiltration Is a Prognostic Marker of Muscle Function After Rotator Cuff Tear.

Valencia AP, Lai JK, Iyer SR, Mistretta KL, Spangenburg EE, Davis DL, Lovering RM, Gilotra MN.

Am J Sports Med. 2018 Jul;46(9):2161-2169. doi: 10.1177/0363546518769267. Epub 2018 May 11.


Qualitative Analysis of Attitudes Toward Adult-Child Sexual Activity Among Minor-Attracted Persons.

Spriggs SA, Cohen LJ, Valencia A, Yaseen ZS, Galynker II.

J Sex Marital Ther. 2018 Jun 18:1-13. doi: 10.1080/0092623X.2018.1474406. [Epub ahead of print]


Metreleptin-mediated improvements in insulin sensitivity are independent of food intake in humans with lipodystrophy.

Brown RJ, Valencia A, Startzell M, Cochran E, Walter PJ, Garraffo HM, Cai H, Gharib AM, Ouwerkerk R, Courville AB, Bernstein S, Brychta RJ, Chen KY, Walter M, Auh S, Gorden P.

J Clin Invest. 2018 Aug 1;128(8):3504-3516. doi: 10.1172/JCI95476. Epub 2018 Jul 16.


Implementation and characterization of a controllable dephasing channel based on coupling polarization and spatial degrees of freedom of light.

Urrego DF, Álvarez JR, Calderón-Losada O, Svozilík J, Nuñez M, Valencia A.

Opt Express. 2018 Apr 30;26(9):11940-11949. doi: 10.1364/OE.26.011940.


Germline mutations in the spindle assembly checkpoint genes BUB1 and BUB3 are infrequent in familial colorectal cancer and polyposis.

Mur P, De Voer RM, Olivera-Salguero R, Rodríguez-Perales S, Pons T, Setién F, Aiza G, Valdés-Mas R, Bertini A, Pineda M, Vreede L, Navarro M, Iglesias S, González S, Brunet J, Valencia A, Esteller M, Lázaro C, Kops GJPL, Urioste M, Puente XS, Capellá G, Valle L.

Mol Cancer. 2018 Feb 15;17(1):23. doi: 10.1186/s12943-018-0762-8.


Induced Cre-mediated knockdown of Brca1 in skeletal muscle reduces mitochondrial respiration and prevents glucose intolerance in adult mice on a high-fat diet.

Jackson KC, Tarpey MD, Valencia AP, Iñigo MR, Pratt SJ, Patteson DJ, McClung JM, Lovering RM, Thomson DM, Spangenburg EE.

FASEB J. 2018 Jun;32(6):3070-3084. doi: 10.1096/fj.201700464R. Epub 2018 Jan 26.


Buttermilk and Krill Oil Phospholipids Improve Hippocampal Insulin Resistance and Synaptic Signaling in Aged Rats.

Tomé-Carneiro J, Carmen Crespo M, Burgos-Ramos E, Tomas-Zapico C, García-Serrano A, Castro-Gómez P, Venero C, Pereda-Pérez I, Baliyan S, Valencia A, Fontecha J, Dávalos A, Visioli F.

Mol Neurobiol. 2018 Sep;55(9):7285-7296. doi: 10.1007/s12035-018-0934-y. Epub 2018 Feb 3.


Epigenetic and Transcriptional Variability Shape Phenotypic Plasticity.

Ecker S, Pancaldi V, Valencia A, Beck S, Paul DS.

Bioessays. 2018 Feb;40(2). doi: 10.1002/bies.201700148. Epub 2017 Dec 18. Review.


Reference values of amino acids, acylcarnitines and succinylacetone by tandem mass spectrometry for use in newborn screening in southwest Colombia.

Céspedes N, Valencia A, Echeverry CA, Arce-Plata MI, Colón C, Castiñeiras DE, Hurtado PM, Cocho JA, Herrera S, Arévalo-Herrera M.

Colomb Med (Cali). 2017 Sep 30;48(3):113-119. doi: 10.25100/cm.v48i3.2180.


Impaired contractile function of the supraspinatus in the acute period following a rotator cuff tear.

Valencia AP, Iyer SR, Spangenburg EE, Gilotra MN, Lovering RM.

BMC Musculoskelet Disord. 2017 Nov 9;18(1):436. doi: 10.1186/s12891-017-1789-5.


Precision medicine needs pioneering clinical bioinformaticians.

Gómez-López G, Dopazo J, Cigudosa JC, Valencia A, Al-Shahrour F.

Brief Bioinform. 2017 Oct 25. doi: 10.1093/bib/bbx144. [Epub ahead of print]


APPRIS 2017: principal isoforms for multiple gene sets.

Rodriguez JM, Rodriguez-Rivas J, Di Domenico T, Vázquez J, Valencia A, Tress ML.

Nucleic Acids Res. 2018 Jan 4;46(D1):D213-D217. doi: 10.1093/nar/gkx997.


Legacy data sharing to improve drug safety assessment: the eTOX project.

Sanz F, Pognan F, Steger-Hartmann T, Díaz C; eTOX, Cases M, Pastor M, Marc P, Wichard J, Briggs K, Watson DK, Kleinöder T, Yang C, Amberg A, Beaumont M, Brookes AJ, Brunak S, Cronin MTD, Ecker GF, Escher S, Greene N, Guzmán A, Hersey A, Jacques P, Lammens L, Mestres J, Muster W, Northeved H, Pinches M, Saiz J, Sajot N, Valencia A, van der Lei J, Vermeulen NPE, Vock E, Wolber G, Zamora I.

Nat Rev Drug Discov. 2017 Dec;16(12):811-812. doi: 10.1038/nrd.2017.177. Epub 2017 Oct 13.


Interdisciplinary Family Conferences to Improve Patient Experience in the Neonatal Intensive Care Unit.

Trujillo JA, Fernandez Y, Ghafoori L, Lok K, Valencia A.

Health Soc Work. 2017 Nov 1;42(4):241-246. doi: 10.1093/hsw/hlx039.


Retracted: Elevated NADPH oxidase activity contributes to oxidative stress and cell death in Huntington's disease.

Valencia A, Sapp E, Kimm JS, McClory H, Reeves PB, Alexander J, Ansong KA, Masso N, Frosch MP, Kegel KB, Li X, DiFiglia M.

Hum Mol Genet. 2017 Nov 1;26(21):4314. doi: 10.1093/hmg/ddx303. No abstract available.


SMARCB1 is required for widespread BAF complex-mediated activation of enhancers and bivalent promoters.

Nakayama RT, Pulice JL, Valencia AM, McBride MJ, McKenzie ZM, Gillespie MA, Ku WL, Teng M, Cui K, Williams RT, Cassel SH, Qing H, Widmer CJ, Demetri GD, Irizarry RA, Zhao K, Ranish JA, Kadoch C.

Nat Genet. 2017 Nov;49(11):1613-1623. doi: 10.1038/ng.3958. Epub 2017 Sep 25.


Automatic identification of informative regions with epigenomic changes associated to hematopoiesis.

Carrillo-de-Santa-Pau E, Juan D, Pancaldi V, Were F, Martin-Subero I, Rico D, Valencia A; BLUEPRINT Consortium.

Nucleic Acids Res. 2017 Sep 19;45(16):9244-9259. doi: 10.1093/nar/gkx618.


Entangled Two Photon Absorption Cross Section on the 808 nm Region for the Common Dyes Zinc Tetraphenylporphyrin and Rhodamine B.

Villabona-Monsalve JP, Calderón-Losada O, Nuñez Portela M, Valencia A.

J Phys Chem A. 2017 Oct 19;121(41):7869-7875. doi: 10.1021/acs.jpca.7b06450. Epub 2017 Oct 5.


Human retinal endothelial cells and astrocytes cultured on 3-D scaffolds for ocular drug discovery and development.

Beharry KD, Cai CL, Valencia GB, Lazzaro D, Valencia AM, Salomone F, Aranda JV.

Prostaglandins Other Lipid Mediat. 2018 Jan;134:93-107. doi: 10.1016/j.prostaglandins.2017.09.005. Epub 2017 Sep 18.


Risk of mortality among children, adolescents, and adults with autism spectrum disorder or attention deficit hyperactivity disorder and their first-degree relatives: a protocol for a systematic review and meta-analysis of observational studies.

Catalá-López F, Hutton B, Page MJ, Ridao M, Driver JA, Alonso-Arroyo A, Forés-Martos J, Macías Saint-Gerons D, Vieta E, Valencia A, Tabarés-Seisdedos R.

Syst Rev. 2017 Sep 15;6(1):189. doi: 10.1186/s13643-017-0581-9.


Association Between Germline Mutations in BRF1, a Subunit of the RNA Polymerase III Transcription Complex, and Hereditary Colorectal Cancer.

Bellido F, Sowada N, Mur P, Lázaro C, Pons T, Valdés-Mas R, Pineda M, Aiza G, Iglesias S, Soto JL, Urioste M, Caldés T, Balbín M, Blay P, Rueda D, Durán M, Valencia A, Moreno V, Brunet J, Blanco I, Navarro M, Calin GA, Borck G, Puente XS, Capellá G, Valle L.

Gastroenterology. 2018 Jan;154(1):181-194.e20. doi: 10.1053/j.gastro.2017.09.005. Epub 2017 Sep 12.


Comparison of algorithms for the detection of cancer drivers at subgene resolution.

Porta-Pardo E, Kamburov A, Tamborero D, Pons T, Grases D, Valencia A, Lopez-Bigas N, Getz G, Godzik A.

Nat Methods. 2017 Aug;14(8):782-788. doi: 10.1038/nmeth.4364. Epub 2017 Jul 17.


Anorexia nervosa and cancer: a protocol for a systematic review and meta-analysis of observational studies.

Catalá-López F, Hutton B, Driver JA, Ridao M, Valderas JM, Gènova-Maleras R, Forés-Martos J, Alonso-Arroyo A, Saint-Gerons DM, Vieta E, Valencia A, Tabarés-Seisdedos R.

Syst Rev. 2017 Jul 11;6(1):137. doi: 10.1186/s13643-017-0540-5.


A molecular hypothesis to explain direct and inverse co-morbidities between Alzheimer's Disease, Glioblastoma and Lung cancer.

Sánchez-Valle J, Tejero H, Ibáñez K, Portero JL, Krallinger M, Al-Shahrour F, Tabarés-Seisdedos R, Baudot A, Valencia A.

Sci Rep. 2017 Jun 30;7(1):4474. doi: 10.1038/s41598-017-04400-6.


Transcription of ribogenesis genes in fish gonads: Applications in the identification of stages of oogenesis and in environmental monitoring of intersex condition.

Rojo-Bartolomé I, Valencia A, Cancio I.

Mar Pollut Bull. 2017 Aug 15;121(1-2):292-301. doi: 10.1016/j.marpolbul.2017.06.027. Epub 2017 Jun 13.


Elucidating the molecular basis of MSH2-deficient tumors by combined germline and somatic analysis.

Vargas-Parra GM, González-Acosta M, Thompson BA, Gómez C, Fernández A, Dámaso E, Pons T, Morak M, Del Valle J, Iglesias S, Velasco À, Solanes A, Sanjuan X, Padilla N, de la Cruz X, Valencia A, Holinski-Feder E, Brunet J, Feliubadaló L, Lázaro C, Navarro M, Pineda M, Capellá G.

Int J Cancer. 2017 Oct 1;141(7):1365-1380. doi: 10.1002/ijc.30820. Epub 2017 Jul 3.

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