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Items: 25

1.

Transcriptomic analysis of Pacific white shrimp (Litopenaeus vannamei, Boone 1931) in response to acute hepatopancreatic necrosis disease caused by Vibrio parahaemolyticus.

Velázquez-Lizárraga AE, Juárez-Morales JL, Racotta IS, Villarreal-Colmenares H, Valdes-Lopez O, Luna-González A, Rodríguez-Jaramillo C, Estrada N, Ascencio F.

PLoS One. 2019 Aug 13;14(8):e0220993. doi: 10.1371/journal.pone.0220993. eCollection 2019.

2.

Salmonella enterica serovar Typhimurium ATCC 14028S is tolerant to plant defenses triggered by the flagellin receptor FLS2.

Wahlig TA, Bixler BJ, Valdés-López O, Mysore KS, Wen J, Ané JM, Kaspar CW.

FEMS Microbiol Lett. 2019 Feb 1;366(4). pii: fny296. doi: 10.1093/femsle/fny296.

3.

Phosphate Deficiency Negatively Affects Early Steps of the Symbiosis between Common Bean and Rhizobia.

Isidra-Arellano MC, Reyero-Saavedra MDR, Sánchez-Correa MDS, Pingault L, Sen S, Joshi T, Girard L, Castro-Guerrero NA, Mendoza-Cozatl DG, Libault M, Valdés-López O.

Genes (Basel). 2018 Oct 15;9(10). pii: E498. doi: 10.3390/genes9100498.

4.

Editorial: Advances in Legume Research.

Rubiales D, Araújo SS, Vaz Patto MC, Rispail N, Valdés-López O.

Front Plant Sci. 2018 Apr 19;9:501. doi: 10.3389/fpls.2018.00501. eCollection 2018. No abstract available.

5.

Gene Silencing of Argonaute5 Negatively Affects the Establishment of the Legume-Rhizobia Symbiosis.

Reyero-Saavedra MDR, Qiao Z, Sánchez-Correa MDS, Díaz-Pineda ME, Reyes JL, Covarrubias AA, Libault M, Valdés-López O.

Genes (Basel). 2017 Nov 28;8(12). pii: E352. doi: 10.3390/genes8120352.

6.

Genetic dissection of the maize (Zea mays L.) MAMP response.

Zhang X, Valdés-López O, Arellano C, Stacey G, Balint-Kurti P.

Theor Appl Genet. 2017 Jun;130(6):1155-1168. doi: 10.1007/s00122-017-2876-6. Epub 2017 Mar 13.

PMID:
28289802
7.

Common Bean: A Legume Model on the Rise for Unraveling Responses and Adaptations to Iron, Zinc, and Phosphate Deficiencies.

Castro-Guerrero NA, Isidra-Arellano MC, Mendoza-Cozatl DG, Valdés-López O.

Front Plant Sci. 2016 May 3;7:600. doi: 10.3389/fpls.2016.00600. eCollection 2016. Review.

8.

Soybean Roots Grown under Heat Stress Show Global Changes in Their Transcriptional and Proteomic Profiles.

Valdés-López O, Batek J, Gomez-Hernandez N, Nguyen CT, Isidra-Arellano MC, Zhang N, Joshi T, Xu D, Hixson KK, Weitz KK, Aldrich JT, Paša-Tolić L, Stacey G.

Front Plant Sci. 2016 Apr 25;7:517. doi: 10.3389/fpls.2016.00517. eCollection 2016.

9.

Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection.

Yan Z, Hossain MS, Valdés-López O, Hoang NT, Zhai J, Wang J, Libault M, Brechenmacher L, Findley S, Joshi T, Qiu L, Sherrier DJ, Ji T, Meyers BC, Xu D, Stacey G.

Plant Biotechnol J. 2016 Jan;14(1):332-41. doi: 10.1111/pbi.12387. Epub 2015 May 14.

10.

Identification of microRNAs and their mRNA targets during soybean nodule development: functional analysis of the role of miR393j-3p in soybean nodulation.

Yan Z, Hossain MS, Arikit S, Valdés-López O, Zhai J, Wang J, Libault M, Ji T, Qiu L, Meyers BC, Stacey G.

New Phytol. 2015 Aug;207(3):748-59. doi: 10.1111/nph.13365. Epub 2015 Mar 17.

11.

The micro-RNA72c-APETALA2-1 node as a key regulator of the common bean-Rhizobium etli nitrogen fixation symbiosis.

Nova-Franco B, Íñiguez LP, Valdés-López O, Alvarado-Affantranger X, Leija A, Fuentes SI, Ramírez M, Paul S, Reyes JL, Girard L, Hernández G.

Plant Physiol. 2015 May;168(1):273-91. doi: 10.1104/pp.114.255547. Epub 2015 Mar 4.

12.

An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes.

Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdés-López O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC.

Plant Cell. 2014 Dec;26(12):4584-601. doi: 10.1105/tpc.114.131847. Epub 2014 Dec 2.

13.

Phenylpropanoids as master regulators: state of the art and perspectives in common bean (Phaseolus vulgaris).

Valdés-López O, Hernández G.

Front Plant Sci. 2014 Jul 17;5:336. doi: 10.3389/fpls.2014.00336. eCollection 2014. No abstract available.

14.

Response of Medicago truncatula seedlings to colonization by Salmonella enterica and Escherichia coli O157:H7.

Jayaraman D, Valdés-López O, Kaspar CW, Ané JM.

PLoS One. 2014 Feb 14;9(2):e87970. doi: 10.1371/journal.pone.0087970. eCollection 2014.

15.

Regulation of copper homeostasis and biotic interactions by microRNA 398b in common bean.

Naya L, Paul S, Valdés-López O, Mendoza-Soto AB, Nova-Franco B, Sosa-Valencia G, Reyes JL, Hernández G.

PLoS One. 2014 Jan 6;9(1):e84416. doi: 10.1371/journal.pone.0084416. eCollection 2014.

16.

miR172 regulates soybean nodulation.

Yan Z, Hossain MS, Wang J, Valdés-López O, Liang Y, Libault M, Qiu L, Stacey G.

Mol Plant Microbe Interact. 2013 Dec;26(12):1371-7. doi: 10.1094/MPMI-04-13-0111-R.

17.

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.

Schmitz RJ, He Y, Valdés-López O, Khan SM, Joshi T, Urich MA, Nery JR, Diers B, Xu D, Stacey G, Ecker JR.

Genome Res. 2013 Oct;23(10):1663-74. doi: 10.1101/gr.152538.112. Epub 2013 Jun 5.

18.

Common bean (Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency.

Aparicio-Fabre R, Guillén G, Loredo M, Arellano J, Valdés-López O, Ramírez M, Iñiguez LP, Panzeri D, Castiglioni B, Cremonesi P, Strozzi F, Stella A, Girard L, Sparvoli F, Hernández G.

BMC Plant Biol. 2013 Feb 13;13:26. doi: 10.1186/1471-2229-13-26.

19.

Identification of quantitative trait loci controlling gene expression during the innate immunity response of soybean.

Valdés-López O, Thibivilliers S, Qiu J, Xu WW, Nguyen TH, Libault M, Le BH, Goldberg RB, Hill CB, Hartman GL, Diers B, Stacey G.

Plant Physiol. 2011 Dec;157(4):1975-86. doi: 10.1104/pp.111.183327. Epub 2011 Sep 30.

20.

MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicity.

Valdés-López O, Yang SS, Aparicio-Fabre R, Graham PH, Reyes JL, Vance CP, Hernández G.

New Phytol. 2010 Aug;187(3):805-18. doi: 10.1111/j.1469-8137.2010.03320.x. Epub 2010 Jun 11.

21.

Transcript profiling of common bean (Phaseolus vulgaris L.) using the GeneChip Soybean Genome Array: optimizing analysis by masking biased probes.

Yang SS, Valdés-López O, Xu WW, Bucciarelli B, Gronwald JW, Hernández G, Vance CP.

BMC Plant Biol. 2010 May 7;10:85. doi: 10.1186/1471-2229-10-85.

22.

Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants.

Hernández G, Valdés-López O, Ramírez M, Goffard N, Weiller G, Aparicio-Fabre R, Fuentes SI, Erban A, Kopka J, Udvardi MK, Vance CP.

Plant Physiol. 2009 Nov;151(3):1221-38. doi: 10.1104/pp.109.143842. Epub 2009 Sep 15.

23.

Transcriptional regulation and signaling in phosphorus starvation: what about legumes?

Valdés-López O, Hernández G.

J Integr Plant Biol. 2008 Oct;50(10):1213-22. doi: 10.1111/j.1744-7909.2008.00758.x. Review.

PMID:
19017108
24.

Essential role of MYB transcription factor: PvPHR1 and microRNA: PvmiR399 in phosphorus-deficiency signalling in common bean roots.

Valdés-López O, Arenas-Huertero C, Ramírez M, Girard L, Sánchez F, Vance CP, Luis Reyes J, Hernández G.

Plant Cell Environ. 2008 Dec;31(12):1834-43. doi: 10.1111/j.1365-3040.2008.01883.x. Epub 2008 Sep 2.

25.

Phosphorus stress in common bean: root transcript and metabolic responses.

Hernández G, Ramírez M, Valdés-López O, Tesfaye M, Graham MA, Czechowski T, Schlereth A, Wandrey M, Erban A, Cheung F, Wu HC, Lara M, Town CD, Kopka J, Udvardi MK, Vance CP.

Plant Physiol. 2007 Jun;144(2):752-67. Epub 2007 Apr 20.

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