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Items: 40

1.

A dynamically interacting flexible loop assists oligomerisation of the Caenorhabditis elegans centriolar protein SAS-6.

Busch JMC, Erat MC, Blank ID, Musgaard M, Biggin PC, Vakonakis I.

Sci Rep. 2019 Mar 5;9(1):3526. doi: 10.1038/s41598-019-40294-2.

2.

Interaction between the Caenorhabditis elegans centriolar protein SAS-5 and microtubules facilitates organelle assembly.

Bianchi S, Rogala KB, Dynes NJ, Hilbert M, Leidel SA, Steinmetz MO, Gönczy P, Vakonakis I.

Mol Biol Cell. 2018 Mar 15;29(6):722-735. doi: 10.1091/mbc.E17-06-0412. Epub 2018 Jan 24.

3.

Structural analysis of P. falciparum KAHRP and PfEMP1 complexes with host erythrocyte spectrin suggests a model for cytoadherent knob protrusions.

Cutts EE, Laasch N, Reiter DM, Trenker R, Slater LM, Stansfeld PJ, Vakonakis I.

PLoS Pathog. 2017 Aug 14;13(8):e1006552. doi: 10.1371/journal.ppat.1006552. eCollection 2017 Aug.

4.

Plasmodium Helical Interspersed Subtelomeric (PHIST) Proteins, at the Center of Host Cell Remodeling.

Warncke JD, Vakonakis I, Beck HP.

Microbiol Mol Biol Rev. 2016 Aug 31;80(4):905-27. doi: 10.1128/MMBR.00014-16. Print 2016 Dec. Review.

5.

Plasmodium falciparum Plasmodium helical interspersed subtelomeric proteins contribute to cytoadherence and anchor P. falciparum erythrocyte membrane protein 1 to the host cell cytoskeleton.

Oberli A, Zurbrügg L, Rusch S, Brand F, Butler ME, Day JL, Cutts EE, Lavstsen T, Vakonakis I, Beck HP.

Cell Microbiol. 2016 Oct;18(10):1415-28. doi: 10.1111/cmi.12583. Epub 2016 Apr 26.

6.

A spiral scaffold underlies cytoadherent knobs in Plasmodium falciparum-infected erythrocytes.

Watermeyer JM, Hale VL, Hackett F, Clare DK, Cutts EE, Vakonakis I, Fleck RA, Blackman MJ, Saibil HR.

Blood. 2016 Jan 21;127(3):343-51. doi: 10.1182/blood-2015-10-674002. Epub 2015 Dec 4.

7.

The centriolar protein CPAP G-box: an amyloid fibril in a single domain.

Cutts EE, Inglis A, Stansfeld PJ, Vakonakis I, Hatzopoulos GN.

Biochem Soc Trans. 2015 Oct;43(5):838-43. doi: 10.1042/BST20150082. Review.

8.

The Caenorhabditis elegans protein SAS-5 forms large oligomeric assemblies critical for centriole formation.

Rogala KB, Dynes NJ, Hatzopoulos GN, Yan J, Pong SK, Robinson CV, Deane CM, Gönczy P, Vakonakis I.

Elife. 2015 May 29;4:e07410. doi: 10.7554/eLife.07410.

9.

A Plasmodium falciparum PHIST protein binds the virulence factor PfEMP1 and comigrates to knobs on the host cell surface.

Oberli A, Slater LM, Cutts E, Brand F, Mundwiler-Pachlatko E, Rusch S, Masik MF, Erat MC, Beck HP, Vakonakis I.

FASEB J. 2014 Oct;28(10):4420-33. doi: 10.1096/fj.14-256057. Epub 2014 Jun 30.

10.

Structural analysis of the G-box domain of the microcephaly protein CPAP suggests a role in centriole architecture.

Hatzopoulos GN, Erat MC, Cutts E, Rogala KB, Slater LM, Stansfeld PJ, Vakonakis I.

Structure. 2013 Nov 5;21(11):2069-77. doi: 10.1016/j.str.2013.08.019. Epub 2013 Sep 26.

11.

Caenorhabditis elegans centriolar protein SAS-6 forms a spiral that is consistent with imparting a ninefold symmetry.

Hilbert M, Erat MC, Hachet V, Guichard P, Blank ID, Flückiger I, Slater L, Lowe ED, Hatzopoulos GN, Steinmetz MO, Gönczy P, Vakonakis I.

Proc Natl Acad Sci U S A. 2013 Jul 9;110(28):11373-8. doi: 10.1073/pnas.1302721110. Epub 2013 Jun 24.

12.

Characterization of 14-3-3-ζ Interactions with integrin tails.

Bonet R, Vakonakis I, Campbell ID.

J Mol Biol. 2013 Sep 9;425(17):3060-72. doi: 10.1016/j.jmb.2013.05.024. Epub 2013 Jun 11.

13.

Structural analysis of collagen type I interactions with human fibronectin reveals a cooperative binding mode.

Erat MC, Sladek B, Campbell ID, Vakonakis I.

J Biol Chem. 2013 Jun 14;288(24):17441-50. doi: 10.1074/jbc.M113.469841. Epub 2013 May 6.

14.

In support of the BMRB.

Markley JL, Akutsu H, Asakura T, Baldus M, Boelens R, Bonvin A, Kaptein R, Bax A, Bezsonova I, Gryk MR, Hoch JC, Korzhnev DM, Maciejewski MW, Case D, Chazin WJ, Cross TA, Dames S, Kessler H, Lange O, Madl T, Reif B, Sattler M, Eliezer D, Fersht A, Forman-Kay J, Kay LE, Fraser J, Gross J, Kortemme T, Sali A, Fujiwara T, Gardner K, Luo X, Rizo-Rey J, Rosen M, Gil RR, Ho C, Rule G, Gronenborn AM, Ishima R, Klein-Seetharaman J, Tang P, van der Wel P, Xu Y, Grzesiek S, Hiller S, Seelig J, Laue ED, Mott H, Nietlispach D, Barsukov I, Lian LY, Middleton D, Blumenschein T, Moore G, Campbell I, Schnell J, Vakonakis IJ, Watts A, Conte MR, Mason J, Pfuhl M, Sanderson MR, Craven J, Williamson M, Dominguez C, Roberts G, Günther U, Overduin M, Werner J, Williamson P, Blindauer C, Crump M, Driscoll P, Frenkiel T, Golovanov A, Matthews S, Parkinson J, Uhrin D, Williams M, Neuhaus D, Oschkinat H, Ramos A, Shaw DE, Steinbeck C, Vendruscolo M, Vuister GW, Walters KJ, Weinstein H, Wüthrich K, Yokoyama S.

Nat Struct Mol Biol. 2012 Sep;19(9):854-60. doi: 10.1038/nsmb.2371. No abstract available.

PMID:
22955930
15.

The GPS motif is a molecular switch for bimodal activities of adhesion class G protein-coupled receptors.

Prömel S, Frickenhaus M, Hughes S, Mestek L, Staunton D, Woollard A, Vakonakis I, Schöneberg T, Schnabel R, Russ AP, Langenhan T.

Cell Rep. 2012 Aug 30;2(2):321-31. doi: 10.1016/j.celrep.2012.06.015. Epub 2012 Aug 2. Erratum in: Cell Rep. 2012 Sep 27;2(3):705.

16.

Structural analysis of the Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) intracellular domain reveals a conserved interaction epitope.

Mayer C, Slater L, Erat MC, Konrat R, Vakonakis I.

J Biol Chem. 2012 Mar 2;287(10):7182-9. doi: 10.1074/jbc.M111.330779. Epub 2012 Jan 16.

17.

Structural basis of the 9-fold symmetry of centrioles.

Kitagawa D, Vakonakis I, Olieric N, Hilbert M, Keller D, Olieric V, Bortfeld M, Erat MC, Flückiger I, Gönczy P, Steinmetz MO.

Cell. 2011 Feb 4;144(3):364-75. doi: 10.1016/j.cell.2011.01.008.

18.

The streptococcal binding site in the gelatin-binding domain of fibronectin is consistent with a non-linear arrangement of modules.

Atkin KE, Brentnall AS, Harris G, Bingham RJ, Erat MC, Millard CJ, Schwarz-Linek U, Staunton D, Vakonakis I, Campbell ID, Potts JR.

J Biol Chem. 2010 Nov 19;285(47):36977-83. doi: 10.1074/jbc.M110.156935. Epub 2010 Sep 15.

19.

Implications for collagen binding from the crystallographic structure of fibronectin 6FnI1-2FnII7FnI.

Erat MC, Schwarz-Linek U, Pickford AR, Farndale RW, Campbell ID, Vakonakis I.

J Biol Chem. 2010 Oct 29;285(44):33764-70. doi: 10.1074/jbc.M110.139394. Epub 2010 Aug 24.

20.

Multi-factorial modulation of IGD motogenic potential in MSF (migration stimulating factor).

Ellis IR, Jones SJ, Staunton D, Vakonakis I, Norman DG, Potts JR, Milner CM, Meenan NA, Raibaud S, Ohea G, Schor AM, Schor SL.

Exp Cell Res. 2010 Sep 10;316(15):2465-76. doi: 10.1016/j.yexcr.2010.04.003. Epub 2010 Apr 18.

PMID:
20403349
21.

Latrophilin signaling links anterior-posterior tissue polarity and oriented cell divisions in the C. elegans embryo.

Langenhan T, Prömel S, Mestek L, Esmaeili B, Waller-Evans H, Hennig C, Kohara Y, Avery L, Vakonakis I, Schnabel R, Russ AP.

Dev Cell. 2009 Oct;17(4):494-504. doi: 10.1016/j.devcel.2009.08.008.

22.

The structure of an integrin/talin complex reveals the basis of inside-out signal transduction.

Anthis NJ, Wegener KL, Ye F, Kim C, Goult BT, Lowe ED, Vakonakis I, Bate N, Critchley DR, Ginsberg MH, Campbell ID.

EMBO J. 2009 Nov 18;28(22):3623-32. doi: 10.1038/emboj.2009.287. Epub 2009 Oct 1.

23.

Motogenic sites in human fibronectin are masked by long range interactions.

Vakonakis I, Staunton D, Ellis IR, Sarkies P, Flanagan A, Schor AM, Schor SL, Campbell ID.

J Biol Chem. 2009 Jun 5;284(23):15668-75. doi: 10.1074/jbc.M109.003673. Epub 2009 Apr 14.

24.

Identification and structural analysis of type I collagen sites in complex with fibronectin fragments.

Erat MC, Slatter DA, Lowe ED, Millard CJ, Farndale RW, Campbell ID, Vakonakis I.

Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4195-200. doi: 10.1073/pnas.0812516106. Epub 2009 Feb 27.

25.

Structural analysis of the interactions between paxillin LD motifs and alpha-parvin.

Lorenz S, Vakonakis I, Lowe ED, Campbell ID, Noble ME, Hoellerer MK.

Structure. 2008 Oct 8;16(10):1521-31. doi: 10.1016/j.str.2008.08.007.

26.

Solution structure and sugar-binding mechanism of mouse latrophilin-1 RBL: a 7TM receptor-attached lectin-like domain.

Vakonakis I, Langenhan T, Prömel S, Russ A, Campbell ID.

Structure. 2008 Jun;16(6):944-53. doi: 10.1016/j.str.2008.02.020.

27.

An integrin phosphorylation switch: the effect of beta3 integrin tail phosphorylation on Dok1 and talin binding.

Oxley CL, Anthis NJ, Lowe ED, Vakonakis I, Campbell ID, Wegener KL.

J Biol Chem. 2008 Feb 29;283(9):5420-6. Epub 2007 Dec 21.

28.

Extracellular matrix: from atomic resolution to ultrastructure.

Vakonakis I, Campbell ID.

Curr Opin Cell Biol. 2007 Oct;19(5):578-83. Epub 2007 Oct 17. Review.

29.

Interdomain association in fibronectin: insight into cryptic sites and fibrillogenesis.

Vakonakis I, Staunton D, Rooney LM, Campbell ID.

EMBO J. 2007 May 16;26(10):2575-83. Epub 2007 Apr 26.

30.

Structure of the N-terminal domain of the circadian clock-associated histidine kinase SasA.

Vakonakis I, Klewer DA, Williams SB, Golden SS, LiWang AC.

J Mol Biol. 2004 Sep 3;342(1):9-17.

PMID:
15313603
31.

Structure of the C-terminal domain of the clock protein KaiA in complex with a KaiC-derived peptide: implications for KaiC regulation.

Vakonakis I, LiWang AC.

Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):10925-30. Epub 2004 Jul 15.

32.

N1...N3 hydrogen bonds of A:U base pairs of RNA are stronger than those of A:T base pairs of DNA.

Vakonakis I, LiWang AC.

J Am Chem Soc. 2004 May 12;126(18):5688-9.

PMID:
15125660
33.

Trans-hydrogen bond deuterium isotope effects of A:T base pairs in DNA.

Vakonakis I, LiWang AC.

J Biomol NMR. 2004 May;29(1):65-72.

PMID:
15017140
34.

Crystal structure of circadian clock protein KaiA from Synechococcus elongatus.

Ye S, Vakonakis I, Ioerger TR, LiWang AC, Sacchettini JC.

J Biol Chem. 2004 May 7;279(19):20511-8. Epub 2004 Mar 8.

35.

Sequence-specific 1H, 13C and 15N resonance assignments of the C-terminal domain of KaiA, a circadian clock protein.

Vakonakis I, LiWang AC.

J Biomol NMR. 2004 Apr;28(4):403-4. No abstract available.

PMID:
14872133
36.

NMR structure of the KaiC-interacting C-terminal domain of KaiA, a circadian clock protein: implications for KaiA-KaiC interaction.

Vakonakis I, Sun J, Wu T, Holzenburg A, Golden SS, LiWang AC.

Proc Natl Acad Sci U S A. 2004 Feb 10;101(6):1479-84. Epub 2004 Jan 28.

37.

Deuterium isotope effects and fractionation factors of hydrogen-bonded A:T base pairs of DNA.

Vakonakis I, Salazar M, Kang M, Dunbar KR, LiWang AC.

J Biomol NMR. 2003 Feb;25(2):105-12.

PMID:
12652119
38.

Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: a potential clock input mechanism.

Williams SB, Vakonakis I, Golden SS, LiWang AC.

Proc Natl Acad Sci U S A. 2002 Nov 26;99(24):15357-62. Epub 2002 Nov 15. Erratum in: Proc Natl Acad Sci U S A. 2003 Jan 21;100(2):763..

39.

Sequence-specific 1H, 13C and 15N resonance assignments of the N-terminal, 135-residue domain of KaiA, a clock protein from Synechococcus elongatus.

Vakonakis I, Risinger AT, Latham MP, Williams SB, Golden SS, LiWang AC.

J Biomol NMR. 2001 Oct;21(2):179-80. No abstract available.

PMID:
11727983
40.

Functional analysis of the Saccharomyces cerevisiae YFR021w/YGR223c/YPL100w ORF family suggests relations to mitochondrial/peroxisomal functions and amino acid signalling pathways.

Georgakopoulos T, Koutroubas G, Vakonakis I, Tzermia M, Prokova V, Voutsina A, Alexandraki D.

Yeast. 2001 Sep 15;18(12):1155-71.

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