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Items: 1 to 50 of 96

1.

Digestion-Free Analysis of Peptides from 30-year-old Formalin-Fixed, Paraffin-Embedded Tissue by Mass Spectrometry Imaging.

Paine MRL, Ellis SR, Maloney D, Heeren RMA, Verhaert PDEM.

Anal Chem. 2018 Aug 7;90(15):9272-9280. doi: 10.1021/acs.analchem.8b01838. Epub 2018 Jul 18.

2.

First characterization of fucosidases in spiders.

Perrella NN, Fuzita FJ, Moreti R, Verhaert PDEM, Lopes AR.

Arch Insect Biochem Physiol. 2018 Jul;98(3):e21462. doi: 10.1002/arch.21462. Epub 2018 Mar 30.

PMID:
29600526
3.

The Bright Future of Peptidomics.

Verhaert PDEM.

Methods Mol Biol. 2018;1719:407-416. doi: 10.1007/978-1-4939-7537-2_28.

PMID:
29476528
4.

High-Accuracy Mass Spectrometry Based Screening Method for the Discovery of Cysteine Containing Peptides in Animal Venoms and Toxins.

van Oosten LN, Pinkse MWH, Pieterse M, Escoubas P, Verhaert PDEM.

Methods Mol Biol. 2018;1719:335-348. doi: 10.1007/978-1-4939-7537-2_22.

PMID:
29476522
5.

The deep-subsurface sulfate reducer Desulfotomaculum kuznetsovii employs two methanol-degrading pathways.

Sousa DZ, Visser M, van Gelder AH, Boeren S, Pieterse MM, Pinkse MWH, Verhaert PDEM, Vogt C, Franke S, Kümmel S, Stams AJM.

Nat Commun. 2018 Jan 16;9(1):239. doi: 10.1038/s41467-017-02518-9.

6.

Radiofrequency surgery: 3500 years old and still young.

Raus PPM, Verhaert PDEM.

Orbit. 2018 Jun;37(3):159-164. doi: 10.1080/01676830.2017.1383469. Epub 2017 Oct 17. Review.

PMID:
29039985
7.

Accelerating the search for the missing proteins in the human proteome.

Baker MS, Ahn SB, Mohamedali A, Islam MT, Cantor D, Verhaert PD, Fanayan S, Sharma S, Nice EC, Connor M, Ranganathan S.

Nat Commun. 2017 Jan 24;8:14271. doi: 10.1038/ncomms14271. Review. No abstract available.

8.

3D-liquid chromatography as a complex mixture characterization tool for knowledge-based downstream process development.

Hanke AT, Tsintavi E, Ramirez Vazquez MD, van der Wielen LA, Verhaert PD, Eppink MH, van de Sandt EJ, Ottens M.

Biotechnol Prog. 2016 Sep;32(5):1283-1291. doi: 10.1002/btpr.2320. Epub 2016 Aug 5.

PMID:
27302666
9.

High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders.

Fuzita FJ, Pinkse MW, Patane JS, Verhaert PD, Lopes AR.

BMC Genomics. 2016 Sep 7;17:716. doi: 10.1186/s12864-016-3048-9.

10.

Proteomics: Back to the future.

Roncada P, Tedeschi G, Fasano M, Verhaert P.

EuPA Open Proteom. 2016 Apr 27;11:45-46. doi: 10.1016/j.euprot.2016.04.001. eCollection 2016 Jun. No abstract available.

11.

Prediction of protein retention times in hydrophobic interaction chromatography by robust statistical characterization of their atomic-level surface properties.

Hanke AT, Klijn ME, Verhaert PD, van der Wielen LA, Ottens M, Eppink MH, van de Sandt EJ.

Biotechnol Prog. 2016 Mar;32(2):372-81. doi: 10.1002/btpr.2219. Epub 2016 Jan 20.

PMID:
26698169
12.

Screening Method for the Discovery of Potential Bioactive Cysteine-Containing Peptides Using 3D Mass Mapping.

van Oosten LN, Pieterse M, Pinkse MW, Verhaert PD.

J Am Soc Mass Spectrom. 2015 Dec;26(12):2039-50. doi: 10.1007/s13361-015-1282-z. Epub 2015 Nov 9.

13.

Perchlorate and chlorate reduction by the Crenarchaeon Aeropyrum pernix and two thermophilic Firmicutes.

Liebensteiner MG, Pinkse MW, Nijsse B, Verhaert PD, Tsesmetzis N, Stams AJ, Lomans BP.

Environ Microbiol Rep. 2015 Dec;7(6):936-45. doi: 10.1111/1758-2229.12335. Epub 2015 Oct 23.

PMID:
26332065
14.

Unravelling the one-carbon metabolism of the acetogen Sporomusa strain An4 by genome and proteome analysis.

Visser M, Pieterse MM, Pinkse MW, Nijsse B, Verhaert PD, de Vos WM, Schaap PJ, Stams AJ.

Environ Microbiol. 2016 Sep;18(9):2843-55. doi: 10.1111/1462-2920.12973. Epub 2015 Aug 11.

PMID:
26147498
15.

Biochemical, transcriptomic and proteomic analyses of digestion in the scorpion Tityus serrulatus: insights into function and evolution of digestion in an ancient arthropod.

Fuzita FJ, Pinkse MW, Patane JS, Juliano MA, Verhaert PD, Lopes AR.

PLoS One. 2015 Apr 15;10(4):e0123841. doi: 10.1371/journal.pone.0123841. eCollection 2015.

16.

Fourier transform assisted deconvolution of skewed peaks in complex multi-dimensional chromatograms.

Hanke AT, Verhaert PD, van der Wielen LA, Eppink MH, van de Sandt EJ, Ottens M.

J Chromatogr A. 2015 May 15;1394:54-61. doi: 10.1016/j.chroma.2015.03.017. Epub 2015 Mar 14.

PMID:
25841612
17.

Cysteine cathepsins as digestive enzymes in the spider Nephilengys cruentata.

Fuzita FJ, Pinkse MW, Verhaert PD, Lopes AR.

Insect Biochem Mol Biol. 2015 May;60:47-58. doi: 10.1016/j.ibmb.2015.03.005. Epub 2015 Mar 25.

PMID:
25818482
18.

Developing new methods to answer old and new questions in neurodegenerative diseases: 21(st) Workshop of the HUPO Brain Proteome Project (HBPP) 23-24 January 2014, Honolulu, Hawaii.

El Magraoui F, Eisenacher M, Schrötter A, Kuhlmann K, Heinsen H, Andrén P, Nilsson P, Häggmark A, Schmitz G, Verhaert P, Borchers C, Yoo JS, Lee BH, Meyer HE, Grinberg LT.

Proteomics. 2014 Jun;14(11):1308-10. doi: 10.1002/pmic.201470083. Epub 2014 Apr 22.

19.

Analytical characterization of complex, biotechnological feedstocks by pH gradient ion exchange chromatography for purification process development.

Kröner F, Hanke AT, Nfor BK, Pinkse MW, Verhaert PD, Ottens M, Hubbuch J.

J Chromatogr A. 2013 Oct 11;1311:55-64. doi: 10.1016/j.chroma.2013.08.034. Epub 2013 Aug 16.

PMID:
24016717
20.

Molecular characterization of Saccharomyces cerevisiae α-pheromone by mass spectrometry-based peptidomics.

Bener Aksam E, Pinkse MW, Verhaert PD.

FEMS Yeast Res. 2013 May;13(3):350-3. doi: 10.1111/1567-1364.12032. Epub 2013 Mar 11.

21.

In vivo phosphorylation of Ser21 and Ser83 during nutrient-induced activation of the yeast protein kinase A (PKA) target trehalase.

Schepers W, Van Zeebroeck G, Pinkse M, Verhaert P, Thevelein JM.

J Biol Chem. 2012 Dec 28;287(53):44130-42. doi: 10.1074/jbc.M112.421503. Epub 2012 Nov 15.

22.

Miniaturized mass-spectrometry-based analysis system for fully automated examination of conditioned cell culture media.

Weber E, Pinkse MW, Bener-Aksam E, Vellekoop MJ, Verhaert PD.

Int J Proteomics. 2012;2012:290457. doi: 10.1155/2012/290457. Epub 2012 Oct 4.

23.

The chains of the heterodimeric amphibian skin antimicrobial peptide, distinctin, are encoded by separate messenger RNAs.

Evaristo G, Pinkse M, Wang L, Zhou M, Wu Y, Wang H, Chen T, Shaw C, Verhaert P.

J Proteomics. 2013 Jan 14;78:245-53. doi: 10.1016/j.jprot.2012.09.016. Epub 2012 Sep 24.

PMID:
23017495
24.

PTM-driven differential peptide display: survey of peptides containing inter/intra-molecular disulfide bridges in frog venoms.

Evaristo GP, Verhaert PD, Pinkse MW.

J Proteomics. 2012 Dec 21;77:215-24. doi: 10.1016/j.jprot.2012.09.001. Epub 2012 Sep 10.

PMID:
22975675
25.

A novel mechanism of iron-core formation by Pyrococcus furiosus archaeoferritin, a member of an uncharacterized branch of the ferritin-like superfamily.

Ebrahimi KH, Hagedoorn PL, van der Weel L, Verhaert PD, Hagen WR.

J Biol Inorg Chem. 2012 Aug;17(6):975-85. doi: 10.1007/s00775-012-0913-0. Epub 2012 Jun 28.

26.

Multi-dimensional fractionation and characterization of crude protein mixtures: toward establishment of a database of protein purification process development parameters.

Nfor BK, Ahamed T, Pinkse MW, van der Wielen LA, Verhaert PD, van Dedem GW, Eppink MH, van de Sandt EJ, Ottens M.

Biotechnol Bioeng. 2012 Dec;109(12):3070-83. doi: 10.1002/bit.24576. Epub 2012 Jul 4.

PMID:
22688729
27.

Model-based rational strategy for chromatographic resin selection.

Nfor BK, Zuluaga DS, Verheijen PJ, Verhaert PD, van der Wielen LA, Ottens M.

Biotechnol Prog. 2011 Nov-Dec;27(6):1629-43.

PMID:
22238769
28.

Sample preparation techniques for the untargeted LC-MS-based discovery of peptides in complex biological matrices.

Finoulst I, Pinkse M, Van Dongen W, Verhaert P.

J Biomed Biotechnol. 2011;2011:245291. doi: 10.1155/2011/245291. Epub 2011 Dec 12. Review.

29.

Exploring the microbial metalloproteome using MIRAGE.

Sevcenco AM, Pinkse MW, Wolterbeek HT, Verhaert PD, Hagen WR, Hagedoorn PL.

Metallomics. 2011 Dec;3(12):1324-30. doi: 10.1039/c1mt00154j. Epub 2011 Nov 17.

PMID:
22094925
30.

High-throughput protein precipitation and hydrophobic interaction chromatography: salt effects and thermodynamic interrelation.

Nfor BK, Hylkema NN, Wiedhaup KR, Verhaert PD, van der Wielen LA, Ottens M.

J Chromatogr A. 2011 Dec 9;1218(49):8958-73. doi: 10.1016/j.chroma.2011.08.016. Epub 2011 Aug 16.

PMID:
21868020
31.

Identification of low abundant secreted proteins and peptides from primary culture supernatants of human T-cells.

Finoulst I, Vink P, Rovers E, Pieterse M, Pinkse M, Bos E, Verhaert P.

J Proteomics. 2011 Dec 10;75(1):23-33. doi: 10.1016/j.jprot.2011.03.034. Epub 2011 Apr 13.

PMID:
21515429
32.

High-throughput isotherm determination and thermodynamic modeling of protein adsorption on mixed mode adsorbents.

Nfor BK, Noverraz M, Chilamkurthi S, Verhaert PD, van der Wielen LA, Ottens M.

J Chromatogr A. 2010 Oct 29;1217(44):6829-50. doi: 10.1016/j.chroma.2010.07.069. Epub 2010 Aug 3.

PMID:
20880532
33.

Imaging of similar mass neuropeptides in neuronal tissue by enhanced resolution MALDI MS with an ion trap - Orbitrap hybrid instrument.

Verhaert PD, Pinkse MW, Strupat K, Conaway MC.

Methods Mol Biol. 2010;656:433-49. doi: 10.1007/978-1-60761-746-4_25.

PMID:
20680606
34.

Molybdenum incorporation in tungsten aldehyde oxidoreductase enzymes from Pyrococcus furiosus.

Sevcenco AM, Bevers LE, Pinkse MW, Krijger GC, Wolterbeek HT, Verhaert PD, Hagen WR, Hagedoorn PL.

J Bacteriol. 2010 Aug;192(16):4143-52. doi: 10.1128/JB.00270-10. Epub 2010 Jun 18.

35.

Nigrocin-2 peptides from Chinese Odorrana frogs--integration of UPLC/MS/MS with molecular cloning in amphibian skin peptidome analysis.

Wang L, Evaristo G, Zhou M, Pinkse M, Wang M, Xu Y, Jiang X, Chen T, Rao P, Verhaert P, Shaw C.

FEBS J. 2010 Mar;277(6):1519-31. doi: 10.1111/j.1742-4658.2010.07580.x. Epub 2010 Feb 11.

36.

Rational and systematic protein purification process development: the next generation.

Nfor BK, Verhaert PD, van der Wielen LA, Hubbuch J, Ottens M.

Trends Biotechnol. 2009 Dec;27(12):673-9. doi: 10.1016/j.tibtech.2009.09.002. Epub 2009 Oct 6.

PMID:
19815300
37.

The tungsten metallome of Pyrococcus furiosus.

Sevcenco AM, Pinkse MW, Bol E, Krijger GC, Wolterbeek HT, Verhaert PD, Hagedoorn PL, Hagen WR.

Metallomics. 2009 Sep;1(5):395-402. doi: 10.1039/b908175e. Epub 2009 Jul 22.

PMID:
21305143
38.

Oleate hydratase catalyzes the hydration of a nonactivated carbon-carbon bond.

Bevers LE, Pinkse MW, Verhaert PD, Hagen WR.

J Bacteriol. 2009 Aug;191(15):5010-2. doi: 10.1128/JB.00306-09. Epub 2009 May 22.

39.

Development of a generic approach to native metalloproteomics: application to the quantitative identification of soluble copper proteins in Escherichia coli.

Sevcenco AM, Krijger GC, Pinkse MW, Verhaert PD, Hagen WR, Hagedoorn PL.

J Biol Inorg Chem. 2009 May;14(4):631-40. doi: 10.1007/s00775-009-0477-9. Epub 2009 Feb 11.

PMID:
19205756
40.

Novel mechanisms in nutrient activation of the yeast protein kinase A pathway.

Thevelein JM, Bonini BM, Castermans D, Haesendonckx S, Kriel J, Louwet W, Thayumanavan P, Popova Y, Rubio-Texeira M, Schepers W, Vandormael P, Van Zeebroeck G, Verhaert P, Versele M, Voordeckers K.

Acta Microbiol Immunol Hung. 2008 Jun;55(2):75-89. doi: 10.1556/AMicr.55.2008.2.1. Review.

PMID:
18595314
41.

Selection of pH-related parameters in ion-exchange chromatography using pH-gradient operations.

Ahamed T, Chilamkurthi S, Nfor BK, Verhaert PD, van Dedem GW, van der Wielen LA, Eppink MH, van de Sandt EJ, Ottens M.

J Chromatogr A. 2008 Jun 13;1194(1):22-9. Epub 2007 Dec 8.

PMID:
18154981
42.

pH-gradient ion-exchange chromatography: an analytical tool for design and optimization of protein separations.

Ahamed T, Nfor BK, Verhaert PD, van Dedem GW, van der Wielen LA, Eppink MH, van de Sandt EJ, Ottens M.

J Chromatogr A. 2007 Sep 14;1164(1-2):181-8. Epub 2007 Jul 27.

PMID:
17673242
43.

Gel-free analysis of the human brain proteome: application of liquid chromatography and mass spectrometry on biopsy and autopsy samples.

Dumont D, Noben JP, Verhaert P, Stinissen P, Robben J.

Proteomics. 2006 Sep;6(18):4967-77.

PMID:
16912970
44.

Lumbar cerebrospinal fluid proteome in multiple sclerosis: characterization by ultrafiltration, liquid chromatography, and mass spectrometry.

Noben JP, Dumont D, Kwasnikowska N, Verhaert P, Somers V, Hupperts R, Stinissen P, Robben J.

J Proteome Res. 2006 Jul;5(7):1647-57.

PMID:
16823972
45.

Subcellular imaging mass spectrometry of brain tissue.

McDonnell LA, Piersma SR, MaartenAltelaar AF, Mize TH, Luxembourg SL, Verhaert PD, van Minnen J, Heeren RM.

J Mass Spectrom. 2005 Feb;40(2):160-8.

PMID:
15706616
46.

Antigens up the nose: identification of putative biomarkers for nasal tolerance induction functional studies combined with proteomics.

Boots AM, Verhaert PD, te Poele RJ, Evers S, Coenen-de Roo CJ, Cleven J, Bos ES.

J Proteome Res. 2004 Sep-Oct;3(5):1056-62.

PMID:
15473695
47.

Sweet Substitute: a software tool for in silico fragmentation of peptide-linked N-glycans.

Clerens S, Van den Ende W, Verhaert P, Geenen L, Arckens L.

Proteomics. 2004 Mar;4(3):629-32.

PMID:
14997486
48.

Compositional analyses of a human menopausal gonadotrophin preparation extracted from urine (menotropin). Identification of some of its major impurities.

van de Weijer BH, Mulders JW, Bos ES, Verhaert PD, van den Hooven HW.

Reprod Biomed Online. 2003 Nov;7(5):547-57.

PMID:
14680547
49.

Immunohistochemical localization of chromogranin A in gonadotrophs and somatotrophs of the turkey and chicken pituitary.

Proudman JA, Clerens S, van den Bergh G, Garrett WM, Verhaert PD, Vandesande F, Berghman LR.

Gen Comp Endocrinol. 2003 Jun 15;132(2):293-303.

PMID:
12812778
50.

Vanessa cardui adipokinetic hormone (Vanca-AKH) in butterflies and a moth.

Köllisch GV, Verhaert PD, Hoffmann KH.

Comp Biochem Physiol A Mol Integr Physiol. 2003 Jun;135(2):303-8.

PMID:
12781830

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