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Best matches for Vêncio RZ[au]:

Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans. Querec TD et al. Nat Immunol. (2009)

Reprogramming of prostate cancer cells--technical challenges. Borges GT et al. Curr Urol Rep. (2015)

Conditional deletion of ELL2 induces murine prostate intraepithelial neoplasia. Pascal LE et al. J Endocrinol. (2017)

Search results

Items: 1 to 50 of 58

1.

Lineage relationship between prostate adenocarcinoma and small cell carcinoma.

Kanan AD, Corey E, Vêncio RZN, Ishwar A, Liu AY.

BMC Cancer. 2019 May 30;19(1):518. doi: 10.1186/s12885-019-5680-7.

2.

The Primary Antisense Transcriptome of Halobacterium salinarum NRC-1.

de Almeida JPP, Vêncio RZN, Lorenzetti APR, Caten FT, Gomes-Filho JV, Koide T.

Genes (Basel). 2019 Apr 5;10(4). pii: E280. doi: 10.3390/genes10040280.

3.

Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea.

Ten-Caten F, Vêncio RZN, Lorenzetti APR, Zaramela LS, Santana AC, Koide T.

RNA Biol. 2018;15(8):1119-1132. doi: 10.1080/15476286.2018.1509661. Epub 2018 Sep 19. Erratum in: RNA Biol. 2018;15(12):1513.

4.

Conditional deletion of ELL2 induces murine prostate intraepithelial neoplasia.

Pascal LE, Masoodi KZ, Liu J, Qiu X, Song Q, Wang Y, Zang Y, Yang T, Wang Y, Rigatti LH, Chandran U, Colli LM, Vencio RZN, Lu Y, Zhang J, Wang Z.

J Endocrinol. 2017 Nov;235(2):123-136. doi: 10.1530/JOE-17-0112.

5.

An expanded evaluation of protein function prediction methods shows an improvement in accuracy.

Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P.

Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6.

6.

Conversion of Prostate Adenocarcinoma to Small Cell Carcinoma-Like by Reprogramming.

Borges GT, Vêncio EF, Quek SI, Chen A, Salvanha DM, Vêncio RZ, Nguyen HM, Vessella RL, Cavanaugh C, Ware CB, Troisch P, Liu AY.

J Cell Physiol. 2016 Sep;231(9):2040-7. doi: 10.1002/jcp.25313. Epub 2016 Feb 4.

PMID:
26773436
7.

Processing of voided urine for prostate cancer RNA biomarker analysis.

Quek SI, Wong OM, Chen A, Borges GT, Ellis WJ, Salvanha DM, Vêncio RZ, Weaver B, Ench YM, Leach RJ, Thompson IM, Liu AY.

Prostate. 2015 Dec;75(16):1886-95. doi: 10.1002/pros.23066. Epub 2015 Aug 26.

PMID:
26306723
8.

A Methodology for the Development of RESTful Semantic Web Services for Gene Expression Analysis.

Guardia GD, Pires LF, Vêncio RZ, Malmegrim KC, de Farias CR.

PLoS One. 2015 Jul 24;10(7):e0134011. doi: 10.1371/journal.pone.0134011. eCollection 2015.

9.

Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea.

Gomes-Filho JV, Zaramela LS, Italiani VC, Baliga NS, Vêncio RZ, Koide T.

RNA Biol. 2015;12(5):490-500. doi: 10.1080/15476286.2015.1019998.

10.

SIFTER-T: a scalable and optimized framework for the SIFTER phylogenomic method of probabilistic protein domain annotation.

Almeida-e-Silva DC, Vêncio RZ.

Biotechniques. 2015 Mar 1;58(3):140-2. doi: 10.2144/000114266. eCollection 2015 Mar.

11.

A metabolomic protocol for plant systematics by matrix-assisted laser-desorption/ionization time-of flight mass spectrometry.

Ernst M, Silva DB, Silva R, Monge M, Semir J, Vêncio RZ, Lopes NP.

Anal Chim Acta. 2015 Feb 15;859:46-58. doi: 10.1016/j.aca.2015.01.002. Epub 2015 Jan 12.

PMID:
25622605
12.

RNA-sequencing analysis of Trichophyton rubrum transcriptome in response to sublethal doses of acriflavine.

Persinoti GF, de Aguiar Peres NT, Jacob TR, Rossi A, Vêncio RZ, Martinez-Rossi NM.

BMC Genomics. 2014;15 Suppl 7:S1. doi: 10.1186/1471-2164-15-S7-S1. Epub 2014 Oct 27.

13.

Reprogramming of prostate cancer cells--technical challenges.

Borges GT, Vêncio EF, Vêncio RZ, Vessella RL, Ware CB, Liu AY.

Curr Urol Rep. 2015 Jan;16(1):468. doi: 10.1007/s11934-014-0468-4. Review.

PMID:
25404182
14.

Transcription start site associated RNAs (TSSaRNAs) are ubiquitous in all domains of life.

Zaramela LS, Vêncio RZ, ten-Caten F, Baliga NS, Koide T.

PLoS One. 2014 Sep 19;9(9):e107680. doi: 10.1371/journal.pone.0107680. eCollection 2014.

15.

Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing.

Ernst M, Silva DB, Silva RR, Vêncio RZ, Lopes NP.

Nat Prod Rep. 2014 Jun;31(6):784-806. doi: 10.1039/c3np70086k. Review.

PMID:
24671623
16.

Semantic integration of gene expression analysis tools and data sources using software connectors.

Miyazaki FA, Guardia GD, Vêncio RZ, de Farias CR.

BMC Genomics. 2013 Oct 25;14 Suppl 6:S2. doi: 10.1186/1471-2164-14-S6-S2.

17.

ProbMetab: an R package for Bayesian probabilistic annotation of LC-MS-based metabolomics.

Silva RR, Jourdan F, Salvanha DM, Letisse F, Jamin EL, Guidetti-Gonzalez S, Labate CA, Vêncio RZ.

Bioinformatics. 2014 May 1;30(9):1336-7. doi: 10.1093/bioinformatics/btu019. Epub 2014 Jan 17.

18.

Gene Expression Profiling Reveals Regulation of ERK Phosphorylation by Androgen-Induced Tumor Suppressor U19/EAF2 in the Mouse Prostate.

Su F, Correa BR, Luo J, Vencio RZ, Pascal LE, Wang Z.

Cancer Microenviron. 2013 Dec;6(3):247-61. doi: 10.1007/s12307-013-0132-4. Epub 2013 Feb 26.

19.

A UML profile for the OBO relation ontology.

Guardia GD, Vêncio RZ, de Farias CR.

BMC Genomics. 2012;13 Suppl 5:S3. doi: 10.1186/1471-2164-13-S5-S3. Epub 2012 Oct 19.

20.

Bladder expression of CD cell surface antigens and cell-type-specific transcriptomes.

Liu AY, Vêncio RZ, Page LS, Ho ME, Loprieno MA, True LD.

Cell Tissue Res. 2012 Jun;348(3):589-600. doi: 10.1007/s00441-012-1383-y. Epub 2012 Mar 20.

21.

In silico identification of conserved intercoding sequences in Leishmania genomes: unraveling putative cis-regulatory elements.

Vasconcelos EJ, Terrão MC, Ruiz JC, Vêncio RZ, Cruz AK.

Mol Biochem Parasitol. 2012 Jun;183(2):140-50. doi: 10.1016/j.molbiopara.2012.02.009. Epub 2012 Feb 25.

22.

Reprogramming of prostate cancer-associated stromal cells to embryonic stem-like.

Vêncio EF, Nelson AM, Cavanaugh C, Ware CB, Milller DG, Garcia JC, Vêncio RZ, Loprieno MA, Liu AY.

Prostate. 2012 Sep 15;72(13):1453-63. doi: 10.1002/pros.22497. Epub 2012 Feb 7.

PMID:
22314551
23.

Combining P values to improve classification of differential gene expression in the HTself software.

Cortez DA, Tonon AP, Colepicolo P, Vêncio RZ.

Genet Mol Res. 2011 Dec 5;10(4):3586-95. doi: 10.4238/2011.December.5.5.

24.

Stromal-epithelial interactions in early neoplasia.

Liu AY, Pascal LE, Vêncio RZ, Vêncio EF.

Cancer Biomark. 2010;9(1-6):141-55. doi: 10.3233/CBM-2011-0174.

PMID:
22112474
25.

Insights on PRAME and osteosarcoma by means of gene expression profiling.

Toledo SR, Zago MA, Oliveira ID, Proto-Siqueira R, Okamoto OK, Severino P, Vêncio RZ, Gamba FT, Silva WA, Moreira-Filho CA, Torre CA, Alves MT, Garcia-Filho RJ, Simpson AJ, Petrilli AS.

J Orthop Sci. 2011 Jul;16(4):458-66. doi: 10.1007/s00776-011-0106-7. Epub 2011 Jun 21.

PMID:
21691740
26.

Lineage relationship of prostate cancer cell types based on gene expression.

Pascal LE, Vêncio RZ, Vessella RL, Ware CB, Vêncio EF, Denyer G, Liu AY.

BMC Med Genomics. 2011 May 23;4:46. doi: 10.1186/1755-8794-4-46.

27.

Differential Inductive Signaling of CD90 Prostate Cancer-Associated Fibroblasts Compared to Normal Tissue Stromal Mesenchyme Cells.

Pascal LE, Ai J, Vêncio RZ, Vêncio EF, Zhou Y, Page LS, True LD, Wang Z, Liu AY.

Cancer Microenviron. 2011 Jan 7;4(1):51-9. doi: 10.1007/s12307-010-0061-4.

28.

ProbFAST: Probabilistic functional analysis system tool.

Silva IT, Vêncio RZ, Oliveira TY, Molfetta GA, Silva WA Jr.

BMC Bioinformatics. 2010 Mar 30;11:161. doi: 10.1186/1471-2105-11-161.

29.

Gene expression relationship between prostate cancer cells of Gleason 3, 4 and normal epithelial cells as revealed by cell type-specific transcriptomes.

Pascal LE, Vêncio RZ, Page LS, Liebeskind ES, Shadle CP, Troisch P, Marzolf B, True LD, Hood LE, Liu AY.

BMC Cancer. 2009 Dec 18;9:452. doi: 10.1186/1471-2407-9-452.

30.

Gene expression down-regulation in CD90+ prostate tumor-associated stromal cells involves potential organ-specific genes.

Pascal LE, Goo YA, Vêncio RZ, Page LS, Chambers AA, Liebeskind ES, Takayama TK, True LD, Liu AY.

BMC Cancer. 2009 Sep 8;9:317. doi: 10.1186/1471-2407-9-317.

31.

Temporal expression profiling of the effects of secreted factors from prostate stromal cells on embryonal carcinoma stem cells.

Pascal LE, Vêncio RZ, Goo YA, Page LS, Shadle CP, Liu AY.

Prostate. 2009 Sep 1;69(12):1353-65. doi: 10.1002/pros.20982.

PMID:
19455603
32.

Sugarcane genes associated with sucrose content.

Papini-Terzi FS, Rocha FR, Vêncio RZ, Felix JM, Branco DS, Waclawovsky AJ, Del Bem LE, Lembke CG, Costa MD, Nishiyama MY Jr, Vicentini R, Vincentz MG, Ulian EC, Menossi M, Souza GM.

BMC Genomics. 2009 Mar 21;10:120. doi: 10.1186/1471-2164-10-120.

33.

Global gene expression analysis during germination in the chytridiomycete Blastocladiella emersonii.

Salem-Izacc SM, Koide T, Vêncio RZ, Gomes SL.

Eukaryot Cell. 2009 Feb;8(2):170-80. doi: 10.1128/EC.00330-08. Epub 2008 Dec 19.

34.

Age-dependent signature of metallothionein expression in primary CD4 T cell responses is due to sustained zinc signaling.

Lee WW, Cui D, Czesnikiewicz-Guzik M, Vencio RZ, Shmulevich I, Aderem A, Weyand CM, Goronzy JJ.

Rejuvenation Res. 2008 Dec;11(6):1001-11. doi: 10.1089/rej.2008.0747.

35.

Plasmodium vivax and the importance of the subtelomeric multigene vir superfamily.

Fernandez-Becerra C, Yamamoto MM, Vêncio RZ, Lacerda M, Rosanas-Urgell A, del Portillo HA.

Trends Parasitol. 2009 Jan;25(1):44-51. doi: 10.1016/j.pt.2008.09.012. Epub 2008 Nov 25. Review.

PMID:
19036639
36.

Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans.

Querec TD, Akondy RS, Lee EK, Cao W, Nakaya HI, Teuwen D, Pirani A, Gernert K, Deng J, Marzolf B, Kennedy K, Wu H, Bennouna S, Oluoch H, Miller J, Vencio RZ, Mulligan M, Aderem A, Ahmed R, Pulendran B.

Nat Immunol. 2009 Jan;10(1):116-125. doi: 10.1038/ni.1688. Epub 2008 Nov 23.

37.

The iron stimulon of Xylella fastidiosa includes genes for type IV pilus and colicin V-like bacteriocins.

Zaini PA, Fogaça AC, Lupo FG, Nakaya HI, Vêncio RZ, da Silva AM.

J Bacteriol. 2008 Apr;190(7):2368-78. doi: 10.1128/JB.01495-07. Epub 2008 Jan 25.

38.

ProbCD: enrichment analysis accounting for categorization uncertainty.

Vêncio RZ, Shmulevich I.

BMC Bioinformatics. 2007 Oct 12;8:383.

39.

Multisite fMRI reproducibility of a motor task using identical MR systems.

Costafreda SG, Brammer MJ, Vêncio RZ, Mourão ML, Portela LA, de Castro CC, Giampietro VP, Amaro E Jr.

J Magn Reson Imaging. 2007 Oct;26(4):1122-6.

PMID:
17896376
40.

Comparative transcriptome analysis of Listeria monocytogenes strains of the two major lineages reveals differences in virulence, cell wall, and stress response.

Severino P, Dussurget O, Vêncio RZ, Dumas E, Garrido P, Padilla G, Piveteau P, Lemaître JP, Kunst F, Glaser P, Buchrieser C.

Appl Environ Microbiol. 2007 Oct;73(19):6078-88. Epub 2007 Aug 17.

41.

Simcluster: clustering enumeration gene expression data on the simplex space.

Vêncio RZ, Varuzza L, de B Pereira CA, Brentani H, Shmulevich I.

BMC Bioinformatics. 2007 Jul 11;8:246.

42.

Common molecular pathways involved in human CD133+/CD34+ progenitor cell expansion and cancer.

Okamoto OK, Carvalho AC, Marti LC, Vêncio RZ, Moreira-Filho CA.

Cancer Cell Int. 2007 Jun 8;7:11.

43.

Signal transduction-related responses to phytohormones and environmental challenges in sugarcane.

Rocha FR, Papini-Terzi FS, Nishiyama MY Jr, Vêncio RZ, Vicentini R, Duarte RD, de Rosa VE Jr, Vinagre F, Barsalobres C, Medeiros AH, Rodrigues FA, Ulian EC, Zingaretti SM, Galbiatti JA, Almeida RS, Figueira AV, Hemerly AS, Silva-Filho MC, Menossi M, Souza GM.

BMC Genomics. 2007 Mar 13;8:71.

44.

Differential transcription profiles in Trypanosoma cruzi associated with clinical forms of Chagas disease: Maxicircle NADH dehydrogenase subunit 7 gene truncation in asymptomatic patient isolates.

Baptista CS, Vêncio RZ, Abdala S, Carranza JC, Westenberger SJ, Silva MN, Pereira CA, Galvão LM, Gontijo ED, Chiari E, Sturm NR, Zingales B.

Mol Biochem Parasitol. 2006 Dec;150(2):236-48. Epub 2006 Sep 15.

PMID:
16996148
45.
46.

BayBoots: a model-free Bayesian tool to identify class markers from gene expression data.

Vêncio RZ, Patrão DF, Baptista CS, Pereira CA, Zingales B.

Genet Mol Res. 2006 Mar 31;5(1):138-42.

47.

SpotWhatR: a user-friendly microarray data analysis system.

Koide T, Salem-Izacc SM, Gomes SL, Vêncio RZ.

Genet Mol Res. 2006 Mar 31;5(1):93-107.

48.

Evaluation of reference-based two-color methods for measurement of gene expression ratios using spotted cDNA microarrays.

Peixoto BR, Vêncio RZ, Egidio CM, Mota-Vieira L, Verjovski-Almeida S, Reis EM.

BMC Genomics. 2006 Feb 24;7:35.

49.

BayGO: Bayesian analysis of ontology term enrichment in microarray data.

Vêncio RZ, Koide T, Gomes SL, Pereira CA.

BMC Bioinformatics. 2006 Feb 23;7:86.

50.

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