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Items: 48

1.

The conserved histone chaperone LIN-53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans.

Müthel S, Uyar B, He M, Krause A, Vitrinel B, Bulut S, Vasiljevic D, Marchal I, Kempa S, Akalin A, Tursun B.

Aging Cell. 2019 Aug 9:e13012. doi: 10.1111/acel.13012. [Epub ahead of print]

2.

HOT or not: examining the basis of high-occupancy target regions.

Wreczycka K, Franke V, Uyar B, Wurmus R, Bulut S, Tursun B, Akalin A.

Nucleic Acids Res. 2019 Jun 20;47(11):5735-5745. doi: 10.1093/nar/gkz460.

3.

The IκB kinase complex is a regulator of mRNA stability.

Mikuda N, Kolesnichenko M, Beaudette P, Popp O, Uyar B, Sun W, Tufan AB, Perder B, Akalin A, Chen W, Mertins P, Dittmar G, Hinz M, Scheidereit C.

EMBO J. 2018 Dec 14;37(24). pii: e98658. doi: 10.15252/embj.201798658. Epub 2018 Nov 22.

PMID:
30467221
4.

PiGx: reproducible genomics analysis pipelines with GNU Guix.

Wurmus R, Uyar B, Osberg B, Franke V, Gosdschan A, Wreczycka K, Ronen J, Akalin A.

Gigascience. 2018 Dec 1;7(12). doi: 10.1093/gigascience/giy123.

5.

Mutations in Disordered Regions Can Cause Disease by Creating Dileucine Motifs.

Meyer K, Kirchner M, Uyar B, Cheng JY, Russo G, Hernandez-Miranda LR, Szymborska A, Zauber H, Rudolph IM, Willnow TE, Akalin A, Haucke V, Gerhardt H, Birchmeier C, Kühn R, Krauss M, Diecke S, Pascual JM, Selbach M.

Cell. 2018 Sep 20;175(1):239-253.e17. doi: 10.1016/j.cell.2018.08.019. Epub 2018 Sep 6.

6.

FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells.

Kolundzic E, Ofenbauer A, Bulut SI, Uyar B, Baytek G, Sommermeier A, Seelk S, He M, Hirsekorn A, Vucicevic D, Akalin A, Diecke S, Lacadie SA, Tursun B.

Dev Cell. 2018 Sep 10;46(5):611-626.e12. doi: 10.1016/j.devcel.2018.07.006. Epub 2018 Aug 2.

7.

Importance of informed consent defined by General Surgery Associations in Turkey.

Kamer E, Tümer AR, Acar T, Uyar B, Ballı G, Cengiz F, Özoğul M, Hacıyanlı M.

Turk J Surg. 2018 Jul 1;34(2):97-100. doi: 10.5152/turkjsurg.2018.3755. eCollection 2018.

8.

Dynamic modeling of temperature change in outdoor operated tubular photobioreactors.

Androga DD, Uyar B, Koku H, Eroglu I.

Bioprocess Biosyst Eng. 2017 Jul;40(7):1017-1031. doi: 10.1007/s00449-017-1765-3. Epub 2017 Apr 6.

PMID:
28386667
9.

SERUM OMENTIN-1 LEVELS AND ENDOTHELIAL DYSFUNCTION IN OBESITY.

Çimen AR, Cerit ET, Iyidir OT, Karakus R, Uyar BB, Toruner FB, Cakir N, Arslan M.

Acta Endocrinol (Buchar). 2017 Apr-Jun;13(2):138-143. doi: 10.4183/aeb.2017.138.

10.

RCAS: an RNA centric annotation system for transcriptome-wide regions of interest.

Uyar B, Yusuf D, Wurmus R, Rajewsky N, Ohler U, Akalin A.

Nucleic Acids Res. 2017 Jun 2;45(10):e91. doi: 10.1093/nar/gkx120.

11.

Degrons in cancer.

Mészáros B, Kumar M, Gibson TJ, Uyar B, Dosztányi Z.

Sci Signal. 2017 Mar 14;10(470). pii: eaak9982. doi: 10.1126/scisignal.aak9982. Review.

PMID:
28292960
12.

Isotretinoin increased carotid intima-media thickness in acne patients.

Saklamaz A, Uyar B, Yalcin M, Cengiz H.

Hippokratia. 2016 Jan-Mar;20(1):14-18.

13.

Implementation and analysis of temperature control strategies for outdoor photobiological hydrogen production.

Androga DD, Uyar B, Koku H, Eroglu I.

Bioprocess Biosyst Eng. 2016 Dec;39(12):1913-1921. Epub 2016 Aug 8.

PMID:
27503485
14.

Effects of isotretinoin on the thyroid gland and thyroid function tests in acne patients: A preliminary study.

Uyar B, Solak A, Saklamaz A, Akyildiz M, Genc B, Gökduman A.

Indian J Dermatol Venereol Leprol. 2016 Sep-Oct;82(5):587-8. doi: 10.4103/0378-6323.182794.

15.

p.R301X Mutation and Variable Phenotypic Appearance of Fabry Disease.

Ozelsancak R, Uyar B.

Am J Case Rep. 2016 May 9;17:315-9.

16.

Bioreactor design for photofermentative hydrogen production.

Uyar B.

Bioprocess Biosyst Eng. 2016 Sep;39(9):1331-40. doi: 10.1007/s00449-016-1614-9. Epub 2016 May 3. Review.

PMID:
27142376
18.

ELM 2016--data update and new functionality of the eukaryotic linear motif resource.

Dinkel H, Van Roey K, Michael S, Kumar M, Uyar B, Altenberg B, Milchevskaya V, Schneider M, Kühn H, Behrendt A, Dahl SL, Damerell V, Diebel S, Kalman S, Klein S, Knudsen AC, Mäder C, Merrill S, Staudt A, Thiel V, Welti L, Davey NE, Diella F, Gibson TJ.

Nucleic Acids Res. 2016 Jan 4;44(D1):D294-300. doi: 10.1093/nar/gkv1291. Epub 2015 Nov 28.

19.
20.

Is there a role for DWI in the diagnosis of sacroiliitis based on ASAS criteria?

Sahin N, Hacibeyoglu H, Ince O, Solak A, Uyar B, Erol O, Uslu ZA, Kobak S.

Int J Clin Exp Med. 2015 May 15;8(5):7544-52. eCollection 2015.

21.

Hydrogen production by hup(-) mutant and wild-type strains of Rhodobacter capsulatus from dark fermentation effluent of sugar beet thick juice in batch and continuous photobioreactors.

Uyar B, Gürgan M, Özgür E, Gündüz U, Yücel M, Eroglu I.

Bioprocess Biosyst Eng. 2015 Oct;38(10):1935-42. doi: 10.1007/s00449-015-1435-2. Epub 2015 Jul 12.

PMID:
26164274
22.

Basaloid follicular hamartoma on the upper eyelid.

Uyar B, Sivrikoz ON, Sacar H.

Postepy Dermatol Alergol. 2015 Jun;32(3):221-4. doi: 10.5114/pdia.2014.44027. Epub 2015 Jun 15. No abstract available.

23.

Histological investigation of the effect of soybean (Glycine max) extracts on the collagen layer and estrogen receptors in the skin of female rats.

Uyar B, Sivrikoz ON, Ozdemir U, Dasbasi T, Sacar H.

Clinics (Sao Paulo). 2014;69(12):854-61. doi: 10.6061/clinics/2014(12)11.

24.

Aquagenic syringeal acrokeratoderma.

Uyar B.

Indian J Dermatol. 2014 Nov;59(6):632. doi: 10.4103/0019-5154.143578.

25.

How pathogens use linear motifs to perturb host cell networks.

Via A, Uyar B, Brun C, Zanzoni A.

Trends Biochem Sci. 2015 Jan;40(1):36-48. doi: 10.1016/j.tibs.2014.11.001. Epub 2014 Dec 1. Review.

PMID:
25475989
27.

Comparison of different scoring systems in patients undergoing colorectal cancer surgery for predicting mortality and morbidity.

Cengiz F, Kamer E, Zengel B, Uyar B, Tavusbay C, Unalp HR.

Indian J Cancer. 2014 Oct-Dec;51(4):543-8. doi: 10.4103/0019-509X.175318.

28.

Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?

Uyar B, Weatheritt RJ, Dinkel H, Davey NE, Gibson TJ.

Mol Biosyst. 2014 Oct;10(10):2626-42. doi: 10.1039/c4mb00290c.

29.

Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.

Van Roey K, Uyar B, Weatheritt RJ, Dinkel H, Seiler M, Budd A, Gibson TJ, Davey NE.

Chem Rev. 2014 Jul 9;114(13):6733-78. doi: 10.1021/cr400585q. Epub 2014 Jun 13. Review. No abstract available.

PMID:
24926813
30.

Plasma orexin-A and ghrelin levels in patients with chronic obstructive pulmonary disease: Interaction with nutritional status and body composition.

Akbulut G, Gezmen-Karadağ M, Ertaş Y, Uyar BB, Yassibaş E, Türközü D, Celebı F, Paşaoğlu OT, Toka O, Yildiran H, Sanlier N, Köktürk N.

Exp Ther Med. 2014 Jun;7(6):1617-1624. Epub 2014 Mar 10.

31.

Intracardiac multiple thrombus formation as a rare manifestation of primary antiphospholipid antibody syndrome: a case report.

Uyar IS, Uyar B, Erdogan I, Sivrikoz ON, Kobak S, Alayunt EA.

Lupus. 2014 Jun;23(7):721-3. doi: 10.1177/0961203314527368. Epub 2014 Mar 7. No abstract available.

PMID:
24608962
32.

The eukaryotic linear motif resource ELM: 10 years and counting.

Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, Speck T, Krüger D, Grebnev G, Kuban M, Strumillo M, Uyar B, Budd A, Altenberg B, Seiler M, Chemes LB, Glavina J, Sánchez IE, Diella F, Gibson TJ.

Nucleic Acids Res. 2014 Jan;42(Database issue):D259-66. doi: 10.1093/nar/gkt1047. Epub 2013 Nov 7.

33.

Giant chondroid syringoma radiologically mimicking malignancy.

Uyar B, Solak A, Sahin N, Bugdayci H.

Indian J Dermatol. 2013 May;58(3):245. doi: 10.4103/0019-5154.110879.

34.

A 17-year-old with neurofibromatosis and spontaneous coronary artery dissection.

Uyar IS, Uyar B, Okur FF, Akpinar B, Abacilar F, Ates M.

Asian Cardiovasc Thorac Ann. 2012 Dec;20(6):724-7. doi: 10.1177/0218492312441356.

PMID:
23284121
35.

RNA-seq analysis of the C. briggsae transcriptome.

Uyar B, Chu JS, Vergara IA, Chua SY, Jones MR, Wong T, Baillie DL, Chen N.

Genome Res. 2012 Aug;22(8):1567-80. doi: 10.1101/gr.134601.111. Epub 2012 Jul 6.

36.

Effects of the 755-nm Alexandrite laser on fine dark facial hair: review of 90 cases.

Uyar B, Saklamaz A.

J Dermatol. 2012 May;39(5):430-2. doi: 10.1111/j.1346-8138.2011.01480.x. Epub 2012 Jan 10. Review.

PMID:
22229689
37.

ELM--the database of eukaryotic linear motifs.

Dinkel H, Michael S, Weatheritt RJ, Davey NE, Van Roey K, Altenberg B, Toedt G, Uyar B, Seiler M, Budd A, Jödicke L, Dammert MA, Schroeter C, Hammer M, Schmidt T, Jehl P, McGuigan C, Dymecka M, Chica C, Luck K, Via A, Chatr-Aryamontri A, Haslam N, Grebnev G, Edwards RJ, Steinmetz MO, Meiselbach H, Diella F, Gibson TJ.

Nucleic Acids Res. 2012 Jan;40(Database issue):D242-51. doi: 10.1093/nar/gkr1064. Epub 2011 Nov 21.

38.

Attributes of short linear motifs.

Davey NE, Van Roey K, Weatheritt RJ, Toedt G, Uyar B, Altenberg B, Budd A, Diella F, Dinkel H, Gibson TJ.

Mol Biosyst. 2012 Jan;8(1):268-81. doi: 10.1039/c1mb05231d. Epub 2011 Sep 12.

PMID:
21909575
39.

Fine tuning of RFX/DAF-19-regulated target gene expression through binding to multiple sites in Caenorhabditis elegans.

Chu JS, Tarailo-Graovac M, Zhang D, Wang J, Uyar B, Tu D, Trinh J, Baillie DL, Chen N.

Nucleic Acids Res. 2012 Jan;40(1):53-64. doi: 10.1093/nar/gkr690. Epub 2011 Sep 8.

40.

genBlastG: using BLAST searches to build homologous gene models.

She R, Chu JS, Uyar B, Wang J, Wang K, Chen N.

Bioinformatics. 2011 Aug 1;27(15):2141-3. doi: 10.1093/bioinformatics/btr342. Epub 2011 Jun 8.

PMID:
21653517
41.

Successful treatment of enterocutaneous fistula in a hemodialysis patient with somatostatin.

Kiykim AA, Uyar B, Katircibaşi T, Ocal K, Yildiz A, Ozer C.

Yonsei Med J. 2009 Dec 31;50(6):865-6. doi: 10.3349/ymj.2009.50.6.865. Epub 2009 Dec 18.

42.

Photoproduction of hydrogen by Rhodobacter capsulatus from thermophilic fermentation effluent.

Uyar B, Schumacher M, Gebicki J, Modigell M.

Bioprocess Biosyst Eng. 2009 Aug;32(5):603-6. doi: 10.1007/s00449-008-0282-9. Epub 2008 Dec 12.

PMID:
19082632
43.

Spectrophotometric determination of rosuvastatin calcium in tablets.

Uyar B, Celebier M, Altinoz S.

Pharmazie. 2007 Jun;62(6):411-3.

PMID:
17663185
44.

The influence of hemodialysis on P-wave signal-averaged electrocardiogram findings.

Ozcan T, Horoz M, Genctoy G, Uyar B, Camsari A, Kiykim AA.

Artif Organs. 2007 Aug;31(8):612-6.

PMID:
17651116
45.

Validation of a rapid micellar electrokinetic capillary chromatographic method for the simultaneous determination of isoniazid and pyridoxine hydrochloride in pharmaceutical formulation.

Nemutlu E, Celebier M, Uyar B, Altinöz S.

J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Jul 1;854(1-2):35-42. Epub 2007 Apr 12.

PMID:
17481971
46.

Acute upper gastrointestinal bleeding due to metastatic lung cancer: an unusual case.

Altintas E, Sezgin O, Uyar B, Polat A.

Yonsei Med J. 2006 Apr 30;47(2):276-7.

47.

Successful treatment of acute hepatic injury caused by paracetamol intoxication in a late-referral patient by N-acetylcysteine.

Kiykim A, Uyar B, Altintas E, Sezer K, Pata C, Yazar A.

J Clin Gastroenterol. 2003 Apr;36(4):372-3. No abstract available.

PMID:
12642753
48.

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