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Items: 25

1.

The origin and biosynthesis of the naphthalenoid moiety of juglone in black walnut.

McCoy RM, Utturkar SM, Crook JW, Thimmapuram J, Widhalm JR.

Hortic Res. 2018 Nov 1;5:67. doi: 10.1038/s41438-018-0067-5. eCollection 2018.

2.

Unique organization and unprecedented diversity of the Bacteroides (Pseudobacteroides) cellulosolvens cellulosome system.

Zhivin O, Dassa B, Moraïs S, Utturkar SM, Brown SD, Henrissat B, Lamed R, Bayer EA.

Biotechnol Biofuels. 2017 Sep 7;10:211. doi: 10.1186/s13068-017-0898-6. eCollection 2017.

3.

A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies.

Utturkar SM, Klingeman DM, Hurt RA Jr, Brown SD.

Front Microbiol. 2017 Jul 18;8:1272. doi: 10.3389/fmicb.2017.01272. eCollection 2017.

4.

Zymomonas mobilis as a model system for production of biofuels and biochemicals.

Yang S, Fei Q, Zhang Y, Contreras LM, Utturkar SM, Brown SD, Himmel ME, Zhang M.

Microb Biotechnol. 2016 Nov;9(6):699-717. doi: 10.1111/1751-7915.12408. Epub 2016 Sep 15. Review.

5.

Application of Long Sequence Reads To Improve Genomes for Clostridium thermocellum AD2, Clostridium thermocellum LQRI, and Pelosinus fermentans R7.

Utturkar SM, Bayer EA, Borovok I, Lamed R, Hurt RA, Land ML, Klingeman DM, Elias D, Zhou J, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Brown SD.

Genome Announc. 2016 Sep 29;4(5). pii: e01043-16. doi: 10.1128/genomeA.01043-16.

6.

Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis.

Utturkar SM, Cude WN, Robeson MS Jr, Yang ZK, Klingeman DM, Land ML, Allman SL, Lu TY, Brown SD, Schadt CW, Podar M, Doktycz MJ, Pelletier DA.

Appl Environ Microbiol. 2016 Aug 30;82(18):5698-708. doi: 10.1128/AEM.01285-16. Print 2016 Sep 15.

7.

Near-Complete Genome Sequence of Clostridium paradoxum Strain JW-YL-7.

Lancaster WA, Utturkar SM, Poole FL, Klingeman DM, Elias DA, Adams MW, Brown SD.

Genome Announc. 2016 May 5;4(3). pii: e00229-16. doi: 10.1128/genomeA.00229-16.

8.

Draft Genome Sequence of Pyrodictium occultum PL19T, a Marine Hyperthermophilic Species of Archaea That Grows Optimally at 105°C.

Utturkar SM, Huber H, Leptihn S, Loh B, Brown SD, Stetter KO, Podar M.

Genome Announc. 2016 Feb 25;4(1). pii: e00016-16. doi: 10.1128/genomeA.00016-16.

9.

Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment.

Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan WA, Robeson MS, Lu TY, Jawdy S, Brown SD, Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, Pelletier DA.

Front Microbiol. 2015 Oct 14;6:1118. doi: 10.3389/fmicb.2015.01118. eCollection 2015.

10.

Complete Genome Sequence of Pelosinus fermentans JBW45, a Member of a Remarkably Competitive Group of Negativicutes in the Firmicutes Phylum.

De León KB, Utturkar SM, Camilleri LB, Elias DA, Arkin AP, Fields MW, Brown SD, Wall JD.

Genome Announc. 2015 Sep 24;3(5). pii: e01090-15. doi: 10.1128/genomeA.01090-15.

11.

Draft Genome Sequence of Burkholderia sp. MR1, a Methylarsenate-Reducing Bacterial Isolate from Florida Golf Course Soil.

Pawitwar SS, Utturkar SM, Brown SD, Yoshinaga M, Rosen BP.

Genome Announc. 2015 Jun 4;3(3). pii: e00608-15. doi: 10.1128/genomeA.00608-15.

12.

Sequence data for Clostridium autoethanogenum using three generations of sequencing technologies.

Utturkar SM, Klingeman DM, Bruno-Barcena JM, Chinn MS, Grunden AM, Köpke M, Brown SD.

Sci Data. 2015 Apr 14;2:150014. doi: 10.1038/sdata.2015.14. eCollection 2015.

13.

Draft Genome Sequence of Brevibacterium linens AE038-8, an Extremely Arsenic-Resistant Bacterium.

Maizel D, Utturkar SM, Brown SD, Ferrero MA, Rosen BP.

Genome Announc. 2015 Apr 16;3(2). pii: e00316-15. doi: 10.1128/genomeA.00316-15.

14.

Draft Genome Sequence of Thalassotalea sp. Strain ND16A Isolated from Eastern Mediterranean Sea Water Collected from a Depth of 1,055 Meters.

Stelling SC, Techtmann SM, Utturkar SM, Alshibli NK, Brown SD, Hazen TC.

Genome Announc. 2014 Nov 26;2(6). pii: e01231-14. doi: 10.1128/genomeA.01231-14.

15.

Draft Genome Sequence of Pseudoalteromonas sp. Strain ND6B, an Oil-Degrading Isolate from Eastern Mediterranean Sea Water Collected at a Depth of 1,210 Meters.

Harris AP, Techtmann SM, Stelling SC, Utturkar SM, Alshibli NK, Brown SD, Hazen TC.

Genome Announc. 2014 Nov 26;2(6). pii: e01212-14. doi: 10.1128/genomeA.01212-14.

16.

Complete Genome Sequence of Pelosinus sp. Strain UFO1 Assembled Using Single-Molecule Real-Time DNA Sequencing Technology.

Brown SD, Utturkar SM, Magnuson TS, Ray AE, Poole FL, Lancaster WA, Thorgersen MP, Adams MW, Elias DA.

Genome Announc. 2014 Sep 4;2(5). pii: e00881-14. doi: 10.1128/genomeA.00881-14.

17.

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences.

Utturkar SM, Klingeman DM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA, Brown SD.

Bioinformatics. 2014 Oct;30(19):2709-16. doi: 10.1093/bioinformatics/btu391. Epub 2014 Jun 14.

18.

Draft Genome Sequence for Caulobacter sp. Strain OR37, a Bacterium Tolerant to Heavy Metals.

Utturkar SM, Bollmann A, Brzoska RM, Klingeman DM, Epstein SE, Palumbo AV, Brown SD.

Genome Announc. 2013 Jun 27;1(3). pii: e00322-13. doi: 10.1128/genomeA.00322-13.

19.

Draft Genome Sequence for Ralstonia sp. Strain OR214, a Bacterium with Potential for Bioremediation.

Utturkar SM, Bollmann A, Brzoska RM, Klingeman DM, Epstein SE, Palumbo AV, Brown SD.

Genome Announc. 2013 Jun 27;1(3). pii: e00321-13. doi: 10.1128/genomeA.00321-13.

20.

Draft Genome Sequence for Desulfovibrio africanus Strain PCS.

Brown SD, Utturkar SM, Arkin AP, Deutschbauer AM, Elias DA, Hazen TC, Chakraborty R.

Genome Announc. 2013 Apr 11;1(2):e0014413. doi: 10.1128/genomeA.00144-13.

21.

Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides.

Brown SD, Utturkar SM, Klingeman DM, Johnson CM, Martin SL, Land ML, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA.

J Bacteriol. 2012 Nov;194(21):5991-3. doi: 10.1128/JB.01243-12.

22.

Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.

Brown SD, Podar M, Klingeman DM, Johnson CM, Yang ZK, Utturkar SM, Land ML, Mosher JJ, Hurt RA Jr, Phelps TJ, Palumbo AV, Arkin AP, Hazen TC, Elias DA.

J Bacteriol. 2012 Sep;194(18):5147-8. doi: 10.1128/JB.01174-12.

23.

Draft genome sequences for Clostridium thermocellum wild-type strain YS and derived cellulose adhesion-defective mutant strain AD2.

Brown SD, Lamed R, Morag E, Borovok I, Shoham Y, Klingeman DM, Johnson CM, Yang Z, Land ML, Utturkar SM, Keller M, Bayer EA.

J Bacteriol. 2012 Jun;194(12):3290-1. doi: 10.1128/JB.00473-12.

24.

Draft genome sequence for Microbacterium laevaniformans strain OR221, a bacterium tolerant to metals, nitrate, and low pH.

Brown SD, Palumbo AV, Panikov N, Ariyawansa T, Klingeman DM, Johnson CM, Land ML, Utturkar SM, Epstein SS.

J Bacteriol. 2012 Jun;194(12):3279-80. doi: 10.1128/JB.00474-12.

25.

Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides.

Brown SD, Klingeman DM, Lu TY, Johnson CM, Utturkar SM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA.

J Bacteriol. 2012 May;194(9):2383-4. doi: 10.1128/JB.00198-12.

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