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Items: 7

1.

Automated quantitative image analysis for ex vivo metastasis assays reveals differing lung composition requirements for metastasis suppression by KISS1.

Young ED, Strom K, Tsue AF, Usset JL, MacPherson S, McGuire JT, Welch DR.

Clin Exp Metastasis. 2018 Feb;35(1-2):77-86. doi: 10.1007/s10585-018-9882-1. Epub 2018 Mar 26.

2.

Assessment of data transformations for model-based clustering of RNA-Seq data.

Noel-MacDonnell JR, Usset J, Goode EL, Fridley BL.

PLoS One. 2018 Feb 27;13(2):e0191758. doi: 10.1371/journal.pone.0191758. eCollection 2018.

3.

An ensemble-based Cox proportional hazards regression framework for predicting survival in metastatic castration-resistant prostate cancer (mCRPC) patients.

Meier R, Graw S, Usset J, Raghavan R, Dai J, Chalise P, Ellis S, Fridley B, Koestler D.

F1000Res. 2016 Nov 16;5:2677. doi: 10.12688/f1000research.8226.1. eCollection 2016.

4.

DNA Methylation-Derived Neutrophil-to-Lymphocyte Ratio: An Epigenetic Tool to Explore Cancer Inflammation and Outcomes.

Koestler DC, Usset J, Christensen BC, Marsit CJ, Karagas MR, Kelsey KT, Wiencke JK.

Cancer Epidemiol Biomarkers Prev. 2017 Mar;26(3):328-338. doi: 10.1158/1055-9965.EPI-16-0461. Epub 2016 Dec 13.

5.

Assessment of Multifactor Gene-Environment Interactions and Ovarian Cancer Risk: Candidate Genes, Obesity, and Hormone-Related Risk Factors.

Usset JL, Raghavan R, Tyrer JP, McGuire V, Sieh W, Webb P, Chang-Claude J, Rudolph A, Anton-Culver H, Berchuck A, Brinton L, Cunningham JM, DeFazio A, Doherty JA, Edwards RP, Gayther SA, Gentry-Maharaj A, Goodman MT, H√łgdall E, Jensen A, Johnatty SE, Kiemeney LA, Kjaer SK, Larson MC, Lurie G, Massuger L, Menon U, Modugno F, Moysich KB, Ness RB, Pike MC, Ramus SJ, Rossing MA, Rothstein J, Song H, Thompson PJ, van den Berg DJ, Vierkant RA, Wang-Gohrke S, Wentzensen N, Whittemore AS, Wilkens LR, Wu AH, Yang H, Pearce CL, Schildkraut JM, Pharoah P, Goode EL, Fridley BL; Ovarian Cancer Association Consortium and the Australian Cancer Study.

Cancer Epidemiol Biomarkers Prev. 2016 May;25(5):780-90. doi: 10.1158/1055-9965.EPI-15-1039. Epub 2016 Mar 14.

6.

Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL).

Koestler DC, Jones MJ, Usset J, Christensen BC, Butler RA, Kobor MS, Wiencke JK, Kelsey KT.

BMC Bioinformatics. 2016 Mar 8;17:120. doi: 10.1186/s12859-016-0943-7.

7.

Interaction Models for Functional Regression.

Usset J, Staicu AM, Maity A.

Comput Stat Data Anal. 2016 Feb 1;94:317-329.

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