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Items: 1 to 50 of 186

1.

Isolation and characterization of Akhmeta virus from wild caught rodents (Apodemus spp.) in Georgia.

Doty JB, Maghlakelidze G, Sikharulidze I, Tu SL, Morgan CN, Mauldin MR, Parkadze O, Kartskhia N, Turmanidze M, Matheny A, Davidson W, Tang S, Gao J, Li Y, Upton C, Carroll DS, Emerson GL, Nakazawa Y.

J Virol. 2019 Sep 25. pii: JVI.00966-19. doi: 10.1128/JVI.00966-19. [Epub ahead of print]

2.

Bioinformatics for Analysis of Poxvirus Genomes.

Tu SL, Upton C.

Methods Mol Biol. 2019;2023:29-62. doi: 10.1007/978-1-4939-9593-6_2.

PMID:
31240669
3.

Base-By-Base Version 3: New Comparative Tools for Large Virus Genomes.

Tu SL, Staheli JP, McClay C, McLeod K, Rose TM, Upton C.

Viruses. 2018 Nov 15;10(11). pii: E637. doi: 10.3390/v10110637.

4.

Complete genome sequence of a novel sea otterpox virus.

Jacob JM, Subramaniam K, Tu SL, Nielsen O, Tuomi PA, Upton C, Waltzek TB.

Virus Genes. 2018 Dec;54(6):756-767. doi: 10.1007/s11262-018-1594-8. Epub 2018 Sep 17.

PMID:
30225673
5.

Evaluation of Total Nitrite Pattern Visualization as an Improved Method for Gunshot Residue Detection and its Application to Casework Samples.

Berger J, Upton C, Springer E.

J Forensic Sci. 2019 Jan;64(1):218-222. doi: 10.1111/1556-4029.13802. Epub 2018 Apr 23.

PMID:
29684940
6.

Bioinformatic Approaches for Comparative Analysis of Viruses.

Amgarten D, Upton C.

Methods Mol Biol. 2018;1704:401-417. doi: 10.1007/978-1-4939-7463-4_15.

PMID:
29277875
7.

Complete genomic characterisation of two novel poxviruses (WKPV and EKPV) from western and eastern grey kangaroos.

Bennett M, Tu SL, Upton C, McArtor C, Gillett A, Laird T, O'Dea M.

Virus Res. 2017 Oct 15;242:106-121. doi: 10.1016/j.virusres.2017.09.016. Epub 2017 Sep 27.

PMID:
28958947
8.

Re-Assembly and Analysis of an Ancient Variola Virus Genome.

Smithson C, Imbery J, Upton C.

Viruses. 2017 Sep 8;9(9). pii: E253. doi: 10.3390/v9090253.

9.

Efficacy of Compression Garments on Recovery From a Simulated Rugby Protocol.

Upton CM, Brown FCW, Hill JA.

J Strength Cond Res. 2017 Nov;31(11):2977-2982. doi: 10.1519/JSC.0000000000002145.

PMID:
28859013
10.

Two novel poxviruses with unusual genome rearrangements: NY_014 and Murmansk.

Smithson C, Meyer H, Gigante CM, Gao J, Zhao H, Batra D, Damon I, Upton C, Li Y.

Virus Genes. 2017 Dec;53(6):883-897. doi: 10.1007/s11262-017-1501-8. Epub 2017 Jul 31.

PMID:
28762208
11.

Characterization of Eptesipoxvirus, a novel poxvirus from a microchiropteran bat.

Tu SL, Nakazawa Y, Gao J, Wilkins K, Gallardo-Romero N, Li Y, Emerson GL, Carroll DS, Upton C.

Virus Genes. 2017 Dec;53(6):856-867. doi: 10.1007/s11262-017-1485-4. Epub 2017 Jul 6.

12.

Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages.

Amgarten D, Martins LF, Lombardi KC, Antunes LP, de Souza APS, Nicastro GG, Kitajima EW, Quaggio RB, Upton C, Setubal JC, da Silva AM.

BMC Genomics. 2017 May 4;18(1):346. doi: 10.1186/s12864-017-3729-z.

13.

Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.).

Sarker S, Das S, Lavers JL, Hutton I, Helbig K, Imbery J, Upton C, Raidal SR.

BMC Genomics. 2017 Apr 13;18(1):298. doi: 10.1186/s12864-017-3680-z.

14.

The genomes of three North American orthopoxviruses.

Smithson C, Tang N, Sammons S, Frace M, Batra D, Li Y, Emerson GL, Carroll DS, Upton C.

Virus Genes. 2017 Feb;53(1):21-34. doi: 10.1007/s11262-016-1388-9. Epub 2016 Sep 9.

PMID:
27613417
15.

Genomic characterization of a novel poxvirus from a flying fox: evidence for a new genus?

O'Dea MA, Tu SL, Pang S, De Ridder T, Jackson B, Upton C.

J Gen Virol. 2016 Sep;97(9):2363-2375. doi: 10.1099/jgv.0.000538. Epub 2016 Jul 7.

PMID:
27389615
16.

Review: Capripoxvirus Diseases: Current Status and Opportunities for Control.

Tuppurainen ESM, Venter EH, Shisler JL, Gari G, Mekonnen GA, Juleff N, Lyons NA, De Clercq K, Upton C, Bowden TR, Babiuk S, Babiuk LA.

Transbound Emerg Dis. 2017 Jun;64(3):729-745. doi: 10.1111/tbed.12444. Epub 2015 Nov 13. Review.

17.

Novel Poxvirus Infection in an Immune Suppressed Patient.

Lakis NS, Li Y, Abraham JL, Upton C, Blair DC, Smith S, Zhao H, Damon IK.

Clin Infect Dis. 2015 Nov 15;61(10):1543-8. doi: 10.1093/cid/civ643. Epub 2015 Aug 3.

PMID:
26243783
18.

Genome sequence and comparative virulence of raccoonpox virus: the first North American poxvirus sequence.

Fleischauer C, Upton C, Victoria J, Jones GJ, Roper RL.

J Gen Virol. 2015 Sep;96(9):2806-21. doi: 10.1099/vir.0.000202. Epub 2015 May 28.

PMID:
26023150
19.

An Ordovician variation on Burgess Shale-type biotas.

Botting JP, Muir LA, Jordan N, Upton C.

Sci Rep. 2015 Apr 24;5:9947. doi: 10.1038/srep09947.

20.

Comparative analysis of the complete genome sequences of Kenyan African swine fever virus isolates within p72 genotypes IX and X.

Bishop RP, Fleischauer C, de Villiers EP, Okoth EA, Arias M, Gallardo C, Upton C.

Virus Genes. 2015 Apr;50(2):303-9. doi: 10.1007/s11262-014-1156-7. Epub 2015 Feb 3.

PMID:
25645905
21.

White matter diffusivity and microarchitecture among schizophrenia subjects and first-degree relatives.

Prasad KM, Upton CH, Schirda CS, Nimgaonkar VL, Keshavan MS.

Schizophr Res. 2015 Jan;161(1):70-5. doi: 10.1016/j.schres.2014.09.045. Epub 2014 Oct 30.

22.

Differential susceptibility of white matter tracts to inflammatory mediators in schizophrenia: an integrated DTI study.

Prasad KM, Upton CH, Nimgaonkar VL, Keshavan MS.

Schizophr Res. 2015 Jan;161(1):119-25. doi: 10.1016/j.schres.2014.09.043. Epub 2014 Oct 22.

23.

Related strains of African swine fever virus with different virulence: genome comparison and analysis.

Portugal R, Coelho J, Höper D, Little NS, Smithson C, Upton C, Martins C, Leitão A, Keil GM.

J Gen Virol. 2015 Feb;96(Pt 2):408-19. doi: 10.1099/vir.0.070508-0. Epub 2014 Nov 18.

PMID:
25406173
24.

Suffix tree searcher: exploration of common substrings in large DNA sequence sets.

Minkley D, Whitney MJ, Lin SH, Barsky MG, Kelly C, Upton C.

BMC Res Notes. 2014 Jul 23;7:466. doi: 10.1186/1756-0500-7-466.

25.

Association between leukocyte telomere length and vascular dementia and cancer mortality in an elderly population.

Chen C, Upton C, Braidy N, Khalil J, Fang ZM, Xu YH, Chan DK.

J Am Geriatr Soc. 2014 Jul;62(7):1384-6. doi: 10.1111/jgs.12910. No abstract available.

PMID:
25039510
26.

Turning the tide: how blue carbon and payments for ecosystem services (PES) might help save mangrove forests.

Locatelli T, Binet T, Kairo JG, King L, Madden S, Patenaude G, Upton C, Huxham M.

Ambio. 2014 Dec;43(8):981-95. doi: 10.1007/s13280-014-0530-y. Epub 2014 May 10. Review.

27.

Swallowing and oropharyngeal dysphagia.

O'Rourke F, Vickers K, Upton C, Chan D.

Clin Med (Lond). 2014 Apr;14(2):196-9. doi: 10.7861/clinmedicine.14-2-196. No abstract available.

28.

Prediction of steps in the evolution of variola virus host range.

Smithson C, Purdy A, Verster AJ, Upton C.

PLoS One. 2014 Mar 13;9(3):e91520. doi: 10.1371/journal.pone.0091520. eCollection 2014.

29.

Persistent infection by HSV-1 is associated with changes in functional architecture of iPSC-derived neurons and brain activation patterns underlying working memory performance.

D'Aiuto L, Prasad KM, Upton CH, Viggiano L, Milosevic J, Raimondi G, McClain L, Chowdari K, Tischfield J, Sheldon M, Moore JC, Yolken RH, Kinchington PR, Nimgaonkar VL.

Schizophr Bull. 2015 Jan;41(1):123-32. doi: 10.1093/schbul/sbu032. Epub 2014 Mar 12.

30.

Expression of a non-coding RNA in ectromelia virus is required for normal plaque formation.

Esteban DJ, Upton C, Bartow-McKenney C, Buller R, Chen NG, Schriewer J, Lefkowitz EJ, Wang C.

Virus Genes. 2014 Feb;48(1):38-47.

PMID:
24078045
31.

FoodCorps: addressing childhood obesity through school food and national service.

Ellis AI, Eschmeyer D, Upton C.

Child Obes. 2013 Feb;9(1):7-10. doi: 10.1089/chi.2013.9107. No abstract available.

PMID:
23373876
32.

African swine fever virus replication and genomics.

Dixon LK, Chapman DA, Netherton CL, Upton C.

Virus Res. 2013 Apr;173(1):3-14. doi: 10.1016/j.virusres.2012.10.020. Epub 2012 Nov 8. Review.

PMID:
23142553
33.

Paramecium bursaria chlorella virus 1 proteome reveals novel architectural and regulatory features of a giant virus.

Dunigan DD, Cerny RL, Bauman AT, Roach JC, Lane LC, Agarkova IV, Wulser K, Yanai-Balser GM, Gurnon JR, Vitek JC, Kronschnabel BJ, Jeanniard A, Blanc G, Upton C, Duncan GA, McClung OW, Ma F, Van Etten JL.

J Virol. 2012 Aug;86(16):8821-34. doi: 10.1128/JVI.00907-12. Epub 2012 Jun 13.

34.

Bioinformatics for analysis of poxvirus genomes.

Da Silva M, Upton C.

Methods Mol Biol. 2012;890:233-58. doi: 10.1007/978-1-61779-876-4_14.

PMID:
22688771
35.

It's a small world after all-viral genomics and the global dominance of viruses.

Ghedin E, Upton C.

Curr Opin Virol. 2011 Oct;1(4):280-1. doi: 10.1016/j.coviro.2011.08.001. Epub 2011 Sep 8. No abstract available.

PMID:
22440784
36.

JaPaFi: A Novel Program for the Identification of Highly Conserved DNA Sequences.

Sadeque A, Barsky M, Marass F, Kruczkiewicz P, Upton C.

Viruses. 2010 Sep;2(9):1867-85. doi: 10.3390/v2091867. Epub 2010 Aug 31.

37.

Genomic analysis of the vaccinia virus strain variants found in Dryvax vaccine.

Qin L, Upton C, Hazes B, Evans DH.

J Virol. 2011 Dec;85(24):13049-60. doi: 10.1128/JVI.05779-11. Epub 2011 Oct 5.

38.

The genome of Yoka poxvirus.

Zhao G, Droit L, Tesh RB, Popov VL, Little NS, Upton C, Virgin HW, Wang D.

J Virol. 2011 Oct;85(19):10230-8. doi: 10.1128/JVI.00637-11. Epub 2011 Aug 3.

39.

Genomic analysis of highly virulent Georgia 2007/1 isolate of African swine fever virus.

Chapman DA, Darby AC, Da Silva M, Upton C, Radford AD, Dixon LK.

Emerg Infect Dis. 2011 Apr;17(4):599-605. doi: 10.3201/eid1704.101283.

40.

Base-By-Base version 2: single nucleotide-level analysis of whole viral genome alignments.

Hillary W, Lin SH, Upton C.

Microb Inform Exp. 2011 Jun 14;1(1):2. doi: 10.1186/2042-5783-1-2.

41.

Prediction of a novel RNA binding domain in crocodilepox Zimbabwe Gene 157.

Little NS, Quon T, Upton C.

Microb Inform Exp. 2011 Nov 21;1(1):12. doi: 10.1186/2042-5783-1-12.

42.

Characterization of indels in poxvirus genomes.

Coulson D, Upton C.

Virus Genes. 2011 Apr;42(2):171-7. doi: 10.1007/s11262-010-0560-x. Epub 2010 Dec 14.

PMID:
21153876
43.

Vaccinia virus-encoded ribonucleotide reductase subunits are differentially required for replication and pathogenesis.

Gammon DB, Gowrishankar B, Duraffour S, Andrei G, Upton C, Evans DH.

PLoS Pathog. 2010 Jul 8;6(7):e1000984. doi: 10.1371/journal.ppat.1000984.

44.

Phylogenomic analysis of 11 complete African swine fever virus genome sequences.

de Villiers EP, Gallardo C, Arias M, da Silva M, Upton C, Martin R, Bishop RP.

Virology. 2010 Apr 25;400(1):128-36. doi: 10.1016/j.virol.2010.01.019. Epub 2010 Feb 20.

45.

Cowpox virus inhibits the transporter associated with antigen processing to evade T cell recognition.

Alzhanova D, Edwards DM, Hammarlund E, Scholz IG, Horst D, Wagner MJ, Upton C, Wiertz EJ, Slifka MK, Früh K.

Cell Host Microbe. 2009 Nov 19;6(5):433-45. doi: 10.1016/j.chom.2009.09.013.

46.

Evidence for a novel gene associated with human influenza A viruses.

Clifford M, Twigg J, Upton C.

Virol J. 2009 Nov 16;6:198. doi: 10.1186/1743-422X-6-198.

47.

Bullous congenital ichthyosiform erythroderma clinically resembling neonatal staphylococcal scalded skin syndrome.

Cheng S, Moss C, Upton CJ, Levell NJ.

Clin Exp Dermatol. 2009 Aug;34(6):747-8. doi: 10.1111/j.1365-2230.2008.03019.x. No abstract available.

PMID:
19635120
48.
49.

Vaccinia virus G8R protein: a structural ortholog of proliferating cell nuclear antigen (PCNA).

Da Silva M, Upton C.

PLoS One. 2009;4(5):e5479. doi: 10.1371/journal.pone.0005479. Epub 2009 May 7.

50.

Biocompatibility and osteogenic potential of human fetal femur-derived cells on surface selective laser sintered scaffolds.

Kanczler JM, Mirmalek-Sani SH, Hanley NA, Ivanov AL, Barry JJ, Upton C, Shakesheff KM, Howdle SM, Antonov EN, Bagratashvili VN, Popov VK, Oreffo RO.

Acta Biomater. 2009 Jul;5(6):2063-71. doi: 10.1016/j.actbio.2009.03.010. Epub 2009 Mar 17.

PMID:
19362063

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