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Items: 22

1.

Characterizing Antibody Responses to Plasmodium vivax and Plasmodium falciparum Antigens in India Using Genome-Scale Protein Microarrays.

Uplekar S, Rao PN, Ramanathapuram L, Awasthi V, Verma K, Sutton P, Ali SZ, Patel A, G SL, Ravishankaran S, Desai N, Tandel N, Choubey S, Barla P, Kanagaraj D, Eapen A, Pradhan K, Singh R, Jain A, Felgner PL, Davies DH, Carlton JM, Das J.

PLoS Negl Trop Dis. 2017 Jan 24;11(1):e0005323. doi: 10.1371/journal.pntd.0005323. eCollection 2017 Jan.

2.

Immunoglobulin G elution in protein A chromatography employing the method of chromatofocusing for reducing the co-elution of impurities.

Pinto ND, Uplekar SD, Moreira AR, Rao G, Frey DD.

Biotechnol Bioeng. 2017 Jan;114(1):154-162. doi: 10.1002/bit.26053. Epub 2016 Jul 28.

PMID:
27425244
3.

A Method for Amplicon Deep Sequencing of Drug Resistance Genes in Plasmodium falciparum Clinical Isolates from India.

Rao PN, Uplekar S, Kayal S, Mallick PK, Bandyopadhyay N, Kale S, Singh OP, Mohanty A, Mohanty S, Wassmer SC, Carlton JM.

J Clin Microbiol. 2016 Jun;54(6):1500-1511. doi: 10.1128/JCM.00235-16. Epub 2016 Mar 23.

4.

Genomic and transcriptomic analysis of the streptomycin-dependent Mycobacterium tuberculosis strain 18b.

Benjak A, Uplekar S, Zhang M, Piton J, Cole ST, Sala C.

BMC Genomics. 2016 Mar 5;17:190. doi: 10.1186/s12864-016-2528-2.

5.

Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research.

Carlton JM, Volkman SK, Uplekar S, Hupalo DN, Pereira Alves JM, Cui L, Donnelly M, Roos DS, Harb OS, Acosta M, Read A, Ribolla PEM, Singh OP, Valecha N, Wassmer SC, Ferreira M, Escalante AA.

Am J Trop Med Hyg. 2015 Sep;93(3 Suppl):87-98. doi: 10.4269/ajtmh.15-0049. Epub 2015 Aug 10.

6.

Non-Invasive Optical Sensor Based Approaches for Monitoring Virus Culture to Minimize BSL3 Laboratory Entry.

Ragupathy V, Setty MK, Kostov Y, Ge X, Uplekar S, Hewlett I, Rao G.

Sensors (Basel). 2015 Jun 24;15(7):14864-70. doi: 10.3390/s150714864.

7.

Studies of protein oxidation as a product quality attribute on a scale-down model for cell culture process development.

Lee ND, Kondragunta B, Uplekar S, Vallejos J, Moreira A, Rao G.

PDA J Pharm Sci Technol. 2015 Mar-Apr;69(2):236-47. doi: 10.5731/pdajpst.2015.01035.

PMID:
25868990
8.

A unique noninvasive approach to monitoring dissolved O2 and CO2 in cell culture.

Chatterjee M, Ge X, Uplekar S, Kostov Y, Croucher L, Pilli M, Rao G.

Biotechnol Bioeng. 2015 Jan;112(1):104-10. doi: 10.1002/bit.25348. Epub 2014 Sep 12.

PMID:
25082532
9.

The PhoP-dependent ncRNA Mcr7 modulates the TAT secretion system in Mycobacterium tuberculosis.

Solans L, Gonzalo-Asensio J, Sala C, Benjak A, Uplekar S, Rougemont J, Guilhot C, Malaga W, Martín C, Cole ST.

PLoS Pathog. 2014 May 29;10(5):e1004183. doi: 10.1371/journal.ppat.1004183. eCollection 2014 May.

10.

Cross-resistance between clofazimine and bedaquiline through upregulation of MmpL5 in Mycobacterium tuberculosis.

Hartkoorn RC, Uplekar S, Cole ST.

Antimicrob Agents Chemother. 2014 May;58(5):2979-81. doi: 10.1128/AAC.00037-14. Epub 2014 Mar 3.

11.

High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis.

Uplekar S, Rougemont J, Cole ST, Sala C.

Nucleic Acids Res. 2013 Jan;41(2):961-77. doi: 10.1093/nar/gks1260. Epub 2012 Dec 7.

12.

High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum.

Jungwirth B, Sala C, Kohl TA, Uplekar S, Baumbach J, Cole ST, Pühler A, Tauch A.

Microbiology. 2013 Jan;159(Pt 1):12-22. doi: 10.1099/mic.0.062059-0. Epub 2012 Oct 25.

PMID:
23103979
13.

Towards a new tuberculosis drug: pyridomycin - nature's isoniazid.

Hartkoorn RC, Sala C, Neres J, Pojer F, Magnet S, Mukherjee R, Uplekar S, Boy-Röttger S, Altmann KH, Cole ST.

EMBO Mol Med. 2012 Oct;4(10):1032-42. doi: 10.1002/emmm.201201689. Epub 2012 Sep 17.

14.

A point mutation in cycA partially contributes to the D-cycloserine resistance trait of Mycobacterium bovis BCG vaccine strains.

Chen JM, Uplekar S, Gordon SV, Cole ST.

PLoS One. 2012;7(8):e43467. doi: 10.1371/journal.pone.0043467. Epub 2012 Aug 17.

15.

Genomic analysis of a hybridoma batch cell culture metabolic status in a standard laboratory 5 L bioreactor.

Kondragunta B, Han J, Joshi BH, Brorson KA, Puri RK, Uplekar S, Moreira AR, Rao G.

Biotechnol Prog. 2012 Sep-Oct;28(5):1126-37. doi: 10.1002/btpr.1605. Epub 2012 Sep 18.

PMID:
22837152
16.

A case study in converting disposable process scouting devices into disposable bioreactors as a future bioprocessing tool.

Vallejos JR, Uplekar S, da Silva JF, Brorson KA, Moreira AR, Rao G.

Biotechnol Bioeng. 2012 Nov;109(11):2790-7. doi: 10.1002/bit.24541. Epub 2012 May 17.

PMID:
22549482
17.

Virulence regulator EspR of Mycobacterium tuberculosis is a nucleoid-associated protein.

Blasco B, Chen JM, Hartkoorn R, Sala C, Uplekar S, Rougemont J, Pojer F, Cole ST.

PLoS Pathog. 2012;8(3):e1002621. doi: 10.1371/journal.ppat.1002621. Epub 2012 Mar 29.

18.

Genome-wide definition of the SigF regulon in Mycobacterium tuberculosis.

Hartkoorn RC, Sala C, Uplekar S, Busso P, Rougemont J, Cole ST.

J Bacteriol. 2012 Apr;194(8):2001-9. doi: 10.1128/JB.06692-11. Epub 2012 Feb 3.

19.

Comparative genomics of Esx genes from clinical isolates of Mycobacterium tuberculosis provides evidence for gene conversion and epitope variation.

Uplekar S, Heym B, Friocourt V, Rougemont J, Cole ST.

Infect Immun. 2011 Oct;79(10):4042-9. doi: 10.1128/IAI.05344-11. Epub 2011 Aug 1.

20.

Spontaneous phthiocerol dimycocerosate-deficient variants of Mycobacterium tuberculosis are susceptible to gamma interferon-mediated immunity.

Kirksey MA, Tischler AD, Siméone R, Hisert KB, Uplekar S, Guilhot C, McKinney JD.

Infect Immun. 2011 Jul;79(7):2829-38. doi: 10.1128/IAI.00097-11. Epub 2011 May 16.

21.

Primer-initiated sequence synthesis to detect and assemble structural variants.

Massouras A, Hens K, Gubelmann C, Uplekar S, Decouttere F, Rougemont J, Cole ST, Deplancke B.

Nat Methods. 2010 Jul;7(7):485-6. doi: 10.1038/nmeth.f.308. Epub 2010 Jun 13. No abstract available.

PMID:
20543844
22.

A comprehensive survey of single nucleotide polymorphisms (SNPs) across Mycobacterium bovis strains and M. bovis BCG vaccine strains refines the genealogy and defines a minimal set of SNPs that separate virulent M. bovis strains and M. bovis BCG strains.

Garcia Pelayo MC, Uplekar S, Keniry A, Mendoza Lopez P, Garnier T, Nunez Garcia J, Boschiroli L, Zhou X, Parkhill J, Smith N, Hewinson RG, Cole ST, Gordon SV.

Infect Immun. 2009 May;77(5):2230-8. doi: 10.1128/IAI.01099-08. Epub 2009 Mar 16.

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