Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 85

1.

Genomic signatures of seed mass adaptation to global precipitation gradients in sorghum.

Wang J, Hu Z, Upadhyaya HD, Morris GP.

Heredity (Edinb). 2019 Jul 17. doi: 10.1038/s41437-019-0249-4. [Epub ahead of print]

PMID:
31316156
2.

Genome-wide cis-regulatory signatures for modulation of agronomic traits as exemplified by drought yield index (DYI) in chickpea.

Sharma A, Basu U, Malik N, Daware A, Thakro V, Narnoliya L, Bajaj D, Tripathi S, Hegde VS, Upadhyaya HD, Tyagi AK, Parida SK.

Funct Integr Genomics. 2019 Jun 8. doi: 10.1007/s10142-019-00691-2. [Epub ahead of print]

PMID:
31177403
3.

Genome wide association analysis of sorghum mini core lines regarding anthracnose, downy mildew, and head smut.

Ahn E, Hu Z, Perumal R, Prom LK, Odvody G, Upadhyaya HD, Magill C.

PLoS One. 2019 May 14;14(5):e0216671. doi: 10.1371/journal.pone.0216671. eCollection 2019.

4.

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits.

Varshney RK, Thudi M, Roorkiwal M, He W, Upadhyaya HD, Yang W, Bajaj P, Cubry P, Rathore A, Jian J, Doddamani D, Khan AW, Garg V, Chitikineni A, Xu D, Gaur PM, Singh NP, Chaturvedi SK, Nadigatla GVPR, Krishnamurthy L, Dixit GP, Fikre A, Kimurto PK, Sreeman SM, Bharadwaj C, Tripathi S, Wang J, Lee SH, Edwards D, Polavarapu KKB, Penmetsa RV, Crossa J, Nguyen HT, Siddique KHM, Colmer TD, Sutton T, von Wettberg E, Vigouroux Y, Xu X, Liu X.

Nat Genet. 2019 May;51(5):857-864. doi: 10.1038/s41588-019-0401-3. Epub 2019 Apr 29.

PMID:
31036963
5.

CLAVATA signaling pathway genes modulating flowering time and flower number in chickpea.

Basu U, Narnoliya L, Srivastava R, Sharma A, Bajaj D, Daware A, Thakro V, Malik N, Upadhyaya HD, Tripathi S, Hegde VS, Tyagi AK, Parida SK.

Theor Appl Genet. 2019 Jul;132(7):2017-2038. doi: 10.1007/s00122-019-03335-y. Epub 2019 Mar 30.

PMID:
30929032
6.

Transcriptional signatures modulating shoot apical meristem morphometric and plant architectural traits enhance yield and productivity in chickpea.

Narnoliya L, Basu U, Bajaj D, Malik N, Thakro V, Daware A, Sharma A, Tripathi S, Hegde VS, Upadhyaya HD, Singh AK, Tyagi AK, Parida SK.

Plant J. 2019 Jun;98(5):864-883. doi: 10.1111/tpj.14284. Epub 2019 Mar 19.

PMID:
30758092
7.

ABC Transporter-Mediated Transport of Glutathione Conjugates Enhances Seed Yield and Quality in Chickpea.

Basu U, Upadhyaya HD, Srivastava R, Daware A, Malik N, Sharma A, Bajaj D, Narnoliya L, Thakro V, Kujur A, Tripathi S, Bharadwaj C, Hegde VS, Pandey AK, Singh AK, Tyagi AK, Parida SK.

Plant Physiol. 2019 May;180(1):253-275. doi: 10.1104/pp.18.00934. Epub 2019 Feb 8.

8.

Biochemical diversity evaluation in chickpea accessions employing mini-core collection.

Bhagyawant SS, Gautam AK, Narvekar DT, Gupta N, Bhadkaria A, Srivastava N, Upadhyaya HD.

Physiol Mol Biol Plants. 2018 Nov;24(6):1165-1183. doi: 10.1007/s12298-018-0579-3. Epub 2018 Jul 23.

PMID:
30425432
9.

Genome-wide generation and genotyping of informative SNPs to scan molecular signatures for seed yield in chickpea.

Basu U, Srivastava R, Bajaj D, Thakro V, Daware A, Malik N, Upadhyaya HD, Parida SK.

Sci Rep. 2018 Sep 5;8(1):13240. doi: 10.1038/s41598-018-29926-1.

10.

Genetic dissection of photosynthetic efficiency traits for enhancing seed yield in chickpea.

Basu U, Bajaj D, Sharma A, Malik N, Daware A, Narnoliya L, Thakro V, Upadhyaya HD, Kumar R, Tripathi S, Bharadwaj C, Tyagi AK, Parida SK.

Plant Cell Environ. 2019 Jan;42(1):158-173. doi: 10.1111/pce.13319. Epub 2018 Jul 30.

PMID:
29676051
11.

Cross-genera transferability of rice and finger millet genomic SSRs to barnyard millet (Echinochloa spp.).

Kalyana Babu B, Sood S, Kumar D, Joshi A, Pattanayak A, Kant L, Upadhyaya HD.

3 Biotech. 2018 Feb;8(2):95. doi: 10.1007/s13205-018-1118-1. Epub 2018 Jan 24.

12.

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

Varshney RK, Shi C, Thudi M, Mariac C, Wallace J, Qi P, Zhang H, Zhao Y, Wang X, Rathore A, Srivastava RK, Chitikineni A, Fan G, Bajaj P, Punnuri S, Gupta SK, Wang H, Jiang Y, Couderc M, Katta MAVSK, Paudel DR, Mungra KD, Chen W, Harris-Shultz KR, Garg V, Desai N, Doddamani D, Kane NA, Conner JA, Ghatak A, Chaturvedi P, Subramaniam S, Yadav OP, Berthouly-Salazar C, Hamidou F, Wang J, Liang X, Clotault J, Upadhyaya HD, Cubry P, Rhoné B, Gueye MC, Sunkar R, Dupuy C, Sparvoli F, Cheng S, Mahala RS, Singh B, Yadav RS, Lyons E, Datta SK, Hash CT, Devos KM, Buckler E, Bennetzen JL, Paterson AH, Ozias-Akins P, Grando S, Wang J, Mohapatra T, Weckwerth W, Reif JC, Liu X, Vigouroux Y, Xu X.

Nat Biotechnol. 2017 Oct;35(10):969-976. doi: 10.1038/nbt.3943. Epub 2017 Sep 18.

13.

Identification of putative QTLs for seedling stage phosphorus starvation response in finger millet (Eleusine coracana L. Gaertn.) by association mapping and cross species synteny analysis.

Ramakrishnan M, Ceasar SA, Vinod KK, Duraipandiyan V, Ajeesh Krishna TP, Upadhyaya HD, Al-Dhabi NA, Ignacimuthu S.

PLoS One. 2017 Aug 18;12(8):e0183261. doi: 10.1371/journal.pone.0183261. eCollection 2017.

14.

A Multiple QTL-Seq Strategy Delineates Potential Genomic Loci Governing Flowering Time in Chickpea.

Srivastava R, Upadhyaya HD, Kumar R, Daware A, Basu U, Shimray PW, Tripathi S, Bharadwaj C, Tyagi AK, Parida SK.

Front Plant Sci. 2017 Jul 11;8:1105. doi: 10.3389/fpls.2017.01105. eCollection 2017.

15.

Diversifying Food Systems in the Pursuit of Sustainable Food Production and Healthy Diets.

Dwivedi SL, Lammerts van Bueren ET, Ceccarelli S, Grando S, Upadhyaya HD, Ortiz R.

Trends Plant Sci. 2017 Oct;22(10):842-856. doi: 10.1016/j.tplants.2017.06.011. Epub 2017 Jul 14. Review.

16.

Genetic dissection of plant growth habit in chickpea.

Upadhyaya HD, Bajaj D, Srivastava R, Daware A, Basu U, Tripathi S, Bharadwaj C, Tyagi AK, Parida SK.

Funct Integr Genomics. 2017 Nov;17(6):711-723. doi: 10.1007/s10142-017-0566-8. Epub 2017 Jun 9.

PMID:
28600722
17.

Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits.

Varshney RK, Saxena RK, Upadhyaya HD, Khan AW, Yu Y, Kim C, Rathore A, Kim D, Kim J, An S, Kumar V, Anuradha G, Yamini KN, Zhang W, Muniswamy S, Kim JS, Penmetsa RV, von Wettberg E, Datta SK.

Nat Genet. 2017 Jul;49(7):1082-1088. doi: 10.1038/ng.3872. Epub 2017 May 22.

PMID:
28530677
18.

Correction: Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches.

Thudi M, Upadhyaya HD, Rathore A, Gaur PM, Krishnamurthy L, Roorkiwal M, Nayak SN, Chaturvedi SK, Basu PS, Gangarao NV, Fikre A, Kimurto P, Sharma PC, Sheshashayee MS, Tobita S, Kashiwagi J, Ito O, Killian A, Varshne RK.

PLoS One. 2017 Apr 6;12(4):e0175609. doi: 10.1371/journal.pone.0175609. eCollection 2017.

19.

Root traits confer grain yield advantages under terminal drought in chickpea (Cicer arietinum L.).

Ramamoorthy P, Lakshmanan K, Upadhyaya HD, Vadez V, Varshney RK.

Field Crops Res. 2017 Feb 1;201:146-161. doi: 10.1016/j.fcr.2016.11.004.

20.

Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut.

Pandey MK, Agarwal G, Kale SM, Clevenger J, Nayak SN, Sriswathi M, Chitikineni A, Chavarro C, Chen X, Upadhyaya HD, Vishwakarma MK, Leal-Bertioli S, Liang X, Bertioli DJ, Guo B, Jackson SA, Ozias-Akins P, Varshney RK.

Sci Rep. 2017 Jan 16;7:40577. doi: 10.1038/srep40577.

21.

Genome-wide development and deployment of informative intron-spanning and intron-length polymorphism markers for genomics-assisted breeding applications in chickpea.

Srivastava R, Bajaj D, Sayal YK, Meher PK, Upadhyaya HD, Kumar R, Tripathi S, Bharadwaj C, Rao AR, Parida SK.

Plant Sci. 2016 Nov;252:374-387. doi: 10.1016/j.plantsci.2016.08.013. Epub 2016 Aug 25.

PMID:
27717474
22.

Shoot traits and their relevance in terminal drought tolerance of chickpea (Cicer arietinum L.).

Ramamoorthy P, Lakshmanan K, Upadhyaya HD, Vadez V, Varshney RK.

Field Crops Res. 2016 Oct;197:10-27.

23.

Exploiting Phenylpropanoid Derivatives to Enhance the Nutraceutical Values of Cereals and Legumes.

Dwivedi SL, Upadhyaya HD, Chung IM, De Vita P, García-Lara S, Guajardo-Flores D, Gutiérrez-Uribe JA, Serna-Saldívar SO, Rajakumar G, Sahrawat KL, Kumar J, Ortiz R.

Front Plant Sci. 2016 Jun 3;7:763. doi: 10.3389/fpls.2016.00763. eCollection 2016. Review.

24.

The Evolution of Photoperiod-Insensitive Flowering in Sorghum, A Genomic Model for Panicoid Grasses.

Cuevas HE, Zhou C, Tang H, Khadke PP, Das S, Lin YR, Ge Z, Clemente T, Upadhyaya HD, Hash CT, Paterson AH.

Mol Biol Evol. 2016 Sep;33(9):2417-28. doi: 10.1093/molbev/msw120. Epub 2016 Jun 22.

25.

Identification of candidate genes and natural allelic variants for QTLs governing plant height in chickpea.

Kujur A, Upadhyaya HD, Bajaj D, Gowda CL, Sharma S, Tyagi AK, Parida SK.

Sci Rep. 2016 Jun 20;6:27968. doi: 10.1038/srep27968.

26.

EcoTILLING-Based Association Mapping Efficiently Delineates Functionally Relevant Natural Allelic Variants of Candidate Genes Governing Agronomic Traits in Chickpea.

Bajaj D, Srivastava R, Nath M, Tripathi S, Bharadwaj C, Upadhyaya HD, Tyagi AK, Parida SK.

Front Plant Sci. 2016 Apr 19;7:450. doi: 10.3389/fpls.2016.00450. eCollection 2016.

27.

Genetic dissection of seed-iron and zinc concentrations in chickpea.

Upadhyaya HD, Bajaj D, Das S, Kumar V, Gowda CL, Sharma S, Tyagi AK, Parida SK.

Sci Rep. 2016 Apr 11;6:24050. doi: 10.1038/srep24050.

28.

Genome-Wide Scans for Delineation of Candidate Genes Regulating Seed-Protein Content in Chickpea.

Upadhyaya HD, Bajaj D, Narnoliya L, Das S, Kumar V, Gowda CL, Sharma S, Tyagi AK, Parida SK.

Front Plant Sci. 2016 Mar 23;7:302. doi: 10.3389/fpls.2016.00302. eCollection 2016.

29.

Identification of candidate genes for dissecting complex branch number trait in chickpea.

Bajaj D, Upadhyaya HD, Das S, Kumar V, Gowda CL, Sharma S, Tyagi AK, Parida SK.

Plant Sci. 2016 Apr;245:61-70. doi: 10.1016/j.plantsci.2016.01.004. Epub 2016 Jan 19.

PMID:
26940492
30.

Association mapping of germinability and seedling vigor in sorghum under controlled low-temperature conditions.

Upadhyaya HD, Wang YH, Sastry DV, Dwivedi SL, Prasad PV, Burrell AM, Klein RR, Morris GP, Klein PE.

Genome. 2016 Feb;59(2):137-45. doi: 10.1139/gen-2015-0122. Epub 2015 Nov 24.

PMID:
26758024
31.

A Genome-wide Combinatorial Strategy Dissects Complex Genetic Architecture of Seed Coat Color in Chickpea.

Bajaj D, Das S, Upadhyaya HD, Ranjan R, Badoni S, Kumar V, Tripathi S, Gowda CL, Sharma S, Singh S, Tyagi AK, Parida SK.

Front Plant Sci. 2015 Nov 17;6:979. doi: 10.3389/fpls.2015.00979. eCollection 2015.

32.

Selection of Host Differentials for Elucidating Pathogenic Variation in Magnaporthe grisea Populations Adapted to Finger Millet (Eleusine coracana).

Babu TK, Sharma R, Thakur RP, Upadhyaya HD, Reddy PN, Girish AG.

Plant Dis. 2015 Dec;99(12):1784-1789. doi: 10.1094/PDIS-10-14-1089-RE. Epub 2015 Oct 4.

PMID:
30699509
33.

Genome-environment associations in sorghum landraces predict adaptive traits.

Lasky JR, Upadhyaya HD, Ramu P, Deshpande S, Hash CT, Bonnette J, Juenger TE, Hyma K, Acharya C, Mitchell SE, Buckler ES, Brenton Z, Kresovich S, Morris GP.

Sci Adv. 2015 Jul 3;1(6):e1400218. doi: 10.1126/sciadv.1400218. eCollection 2015 Jul.

34.

Landrace Germplasm for Improving Yield and Abiotic Stress Adaptation.

Dwivedi SL, Ceccarelli S, Blair MW, Upadhyaya HD, Are AK, Ortiz R.

Trends Plant Sci. 2016 Jan;21(1):31-42. doi: 10.1016/j.tplants.2015.10.012. Epub 2015 Nov 7. Review.

PMID:
26559599
35.

A genome-scale integrated approach aids in genetic dissection of complex flowering time trait in chickpea.

Upadhyaya HD, Bajaj D, Das S, Saxena MS, Badoni S, Kumar V, Tripathi S, Gowda CL, Sharma S, Tyagi AK, Parida SK.

Plant Mol Biol. 2015 Nov;89(4-5):403-20. doi: 10.1007/s11103-015-0377-z. Epub 2015 Sep 22.

PMID:
26394865
36.

Genome-wide insertion-deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea.

Das S, Upadhyaya HD, Srivastava R, Bajaj D, Gowda CL, Sharma S, Singh S, Tyagi AK, Parida SK.

DNA Res. 2015 Oct;22(5):377-86. doi: 10.1093/dnares/dsv020. Epub 2015 Sep 17.

37.

Haploids: Constraints and opportunities in plant breeding.

Dwivedi SL, Britt AB, Tripathi L, Sharma S, Upadhyaya HD, Ortiz R.

Biotechnol Adv. 2015 Nov 1;33(6 Pt 1):812-29. doi: 10.1016/j.biotechadv.2015.07.001. Epub 2015 Jul 9. Review.

PMID:
26165969
38.

A genome-wide SNP scan accelerates trait-regulatory genomic loci identification in chickpea.

Kujur A, Bajaj D, Upadhyaya HD, Das S, Ranjan R, Shree T, Saxena MS, Badoni S, Kumar V, Tripathi S, Gowda CLL, Sharma S, Singh S, Tyagi AK, Parida SK.

Sci Rep. 2015 Jun 10;5:11166. doi: 10.1038/srep11166.

39.

Ultra-high density intra-specific genetic linkage maps accelerate identification of functionally relevant molecular tags governing important agronomic traits in chickpea.

Kujur A, Upadhyaya HD, Shree T, Bajaj D, Das S, Saxena MS, Badoni S, Kumar V, Tripathi S, Gowda CL, Sharma S, Singh S, Tyagi AK, Parida SK.

Sci Rep. 2015 May 5;5:9468. doi: 10.1038/srep09468.

40.

Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea.

Das S, Upadhyaya HD, Bajaj D, Kujur A, Badoni S, Laxmi, Kumar V, Tripathi S, Gowda CL, Sharma S, Singh S, Tyagi AK, Parida SK.

DNA Res. 2015 Jun;22(3):193-203. doi: 10.1093/dnares/dsv004. Epub 2015 Apr 27.

41.

Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea.

Kujur A, Bajaj D, Upadhyaya HD, Das S, Ranjan R, Shree T, Saxena MS, Badoni S, Kumar V, Tripathi S, Gowda CL, Sharma S, Singh S, Tyagi AK, Parida SK.

Front Plant Sci. 2015 Mar 31;6:162. doi: 10.3389/fpls.2015.00162. eCollection 2015.

42.

A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea.

Bajaj D, Upadhyaya HD, Khan Y, Das S, Badoni S, Shree T, Kumar V, Tripathi S, Gowda CL, Singh S, Sharma S, Tyagi AK, Chattopdhyay D, Parida SK.

Sci Rep. 2015 Mar 19;5:9264. doi: 10.1038/srep09264.

43.

Genome-wide conserved non-coding microsatellite (CNMS) marker-based integrative genetical genomics for quantitative dissection of seed weight in chickpea.

Bajaj D, Saxena MS, Kujur A, Das S, Badoni S, Tripathi S, Upadhyaya HD, Gowda CL, Sharma S, Singh S, Tyagi AK, Parida SK.

J Exp Bot. 2015 Mar;66(5):1271-90. doi: 10.1093/jxb/eru478. Epub 2014 Dec 10.

44.

The extent of variation in salinity tolerance of the minicore collection of finger millet (Eleusine coracana L. Gaertn.) germplasm.

Krishnamurthy L, Upadhyaya HD, Purushothaman R, Gowda CL, Kashiwagi J, Dwivedi SL, Singh S, Vadez V.

Plant Sci. 2014 Oct;227:51-9. doi: 10.1016/j.plantsci.2014.07.001. Epub 2014 Jul 8.

PMID:
25219306
45.

Genomewide association studies for 50 agronomic traits in peanut using the 'reference set' comprising 300 genotypes from 48 countries of the semi-arid tropics of the world.

Pandey MK, Upadhyaya HD, Rathore A, Vadez V, Sheshshayee MS, Sriswathi M, Govil M, Kumar A, Gowda MV, Sharma S, Hamidou F, Kumar VA, Khera P, Bhat RS, Khan AW, Singh S, Li H, Monyo E, Nadaf HL, Mukri G, Jackson SA, Guo B, Liang X, Varshney RK.

PLoS One. 2014 Aug 20;9(8):e105228. doi: 10.1371/journal.pone.0105228. eCollection 2014. Erratum in: PLoS One. 2014;9(11):e113326.

46.

Exploring germplasm diversity to understand the domestication process in Cicer spp. using SNP and DArT markers.

Roorkiwal M, von Wettberg EJ, Upadhyaya HD, Warschefsky E, Rathore A, Varshney RK.

PLoS One. 2014 Jul 10;9(7):e102016. doi: 10.1371/journal.pone.0102016. eCollection 2014.

47.

Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers.

Roorkiwal M, Nayak SN, Thudi M, Upadhyaya HD, Brunel D, Mournet P, This D, Sharma PC, Varshney RK.

Front Plant Sci. 2014 Jun 5;5:248. doi: 10.3389/fpls.2014.00248. eCollection 2014.

48.

Phylogenetic diversity of Mesorhizobium in chickpea.

Kim DH, Kaashyap M, Rathore A, Das RR, Parupalli S, Upadhyaya HD, Gopalakrishnan S, Gaur PM, Singh S, Kaur J, Yasin M, Varshney RK.

J Biosci. 2014 Jun;39(3):513-7.

49.

Genetic dissection of drought and heat tolerance in chickpea through genome-wide and candidate gene-based association mapping approaches.

Thudi M, Upadhyaya HD, Rathore A, Gaur PM, Krishnamurthy L, Roorkiwal M, Nayak SN, Chaturvedi SK, Basu PS, Gangarao NV, Fikre A, Kimurto P, Sharma PC, Sheshashayee MS, Tobita S, Kashiwagi J, Ito O, Killian A, Varshney RK.

PLoS One. 2014 May 6;9(5):e96758. doi: 10.1371/journal.pone.0096758. eCollection 2014. Erratum in: PLoS One. 2017 Apr 6;12 (4):e0175609.

50.

Identification of Blast Resistance in a Core Collection of Foxtail Millet Germplasm.

Sharma R, Girish AG, Upadhyaya HD, Humayun P, Babu TK, Rao VP, Thakur RP.

Plant Dis. 2014 Apr;98(4):519-524. doi: 10.1094/PDIS-06-13-0593-RE.

PMID:
30708721

Supplemental Content

Loading ...
Support Center