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NMR-based fragment screening and lead discovery accelerated by principal component analysis.

Namanja AT, Xu J, Wu H, Sun Q, Upadhyay AK, Sun C, Van Doren SR, Petros AM.

J Biomol NMR. 2019 Sep 20. doi: 10.1007/s10858-019-00279-9. [Epub ahead of print]


Inactivation of PP2A by a recurrent mutation drives resistance to MEK inhibitors.

O'Connor CM, Leonard D, Wiredja D, Avelar RA, Wang Z, Schlatzer D, Bryson B, Tokala E, Taylor SE, Upadhyay A, Sangodkar J, Gingras AC, Westermarck J, Xu W, DiFeo A, Brautigan DL, Haider S, Jackson M, Narla G.

Oncogene. 2019 Sep 20. doi: 10.1038/s41388-019-1012-2. [Epub ahead of print]


Dialyzer reuse: is it safe and worth it?

Upadhyay A.

J Bras Nefrol. 2019 Sep 2. pii: S0101-28002019005027103. doi: 10.1590/2175-8239-JBN-2019-0134. [Epub ahead of print] English, Portuguese. No abstract available.


Association of endotoxaemia & gut permeability with complications of acute pancreatitis: Secondary analysis of data.

Singh N, Sonika U, Moka P, Sharma B, Sachdev V, Mishra SK, Upadhyay AD, Saraya A.

Indian J Med Res. 2019 Jun;149(6):763-770. doi: 10.4103/ijmr.IJMR_763_17.


New evidence on the impact of the quality of prenatal care on neonatal and infant mortality in India.

Upadhyay AK, Singh A, Srivastava S.

J Biosoc Sci. 2019 Sep 9:1-13. doi: 10.1017/S0021932019000543. [Epub ahead of print]


Trans-Cinnamaldehyde, Eugenol and Carvacrol Reduce Campylobacter jejuni Biofilms and Modulate Expression of Select Genes and Proteins.

Wagle BR, Upadhyay A, Upadhyaya I, Shrestha S, Arsi K, Liyanage R, Venkitanarayanan K, Donoghue DJ, Donoghue AM.

Front Microbiol. 2019 Aug 7;10:1837. doi: 10.3389/fmicb.2019.01837. eCollection 2019.


Microbubble radiation force-induced translation in plane-wave versus focused transmission modes.

Guidi F, Supponen O, Upadhyay A, Vos HJ, Borden MA, Tortoli P.

IEEE Trans Ultrason Ferroelectr Freq Control. 2019 Aug 23. doi: 10.1109/TUFFC.2019.2937158. [Epub ahead of print]


Higher education, professional occupation, and upper socioeconomic status are associated with lower adherence to medications in patients with inflammatory bowel disease.

Tomar SK, Kedia S, Singh N, Upadhyay AD, Kamat N, Bopanna S, Yadav DP, Goyal S, Jain S, Makharia G, Ahuja V.

JGH Open. 2019 Mar 18;3(4):302-309. doi: 10.1002/jgh3.12160. eCollection 2019 Aug.


Hyperacute spontaneous closure of a traumatic macular hole in a colobomatous eye.

Misra DK, Barman M, Deori N, Upadhyay A.

Am J Ophthalmol Case Rep. 2019 Jun 27;15:100504. doi: 10.1016/j.ajoc.2019.100504. eCollection 2019 Sep.


Unhealthy Snack Food and Beverage Consumption Is Associated with Lower Dietary Adequacy and Length-for-Age z-Scores among 12-23-Month-Olds in Kathmandu Valley, Nepal.

Pries AM, Rehman AM, Filteau S, Sharma N, Upadhyay A, Ferguson EL.

J Nutr. 2019 Jul 16. pii: nxz140. doi: 10.1093/jn/nxz140. [Epub ahead of print]


Impact of adjuvant therapy on survival in patients with myoepithelial carcinoma: A systematic review and individual patient data analysis of 691 patients.

Giridhar P, Gupta P, Mallick S, Upadhyay AD, Rath GK.

Radiother Oncol. 2019 Jul 2;140:125-130. doi: 10.1016/j.radonc.2019.06.017. [Epub ahead of print]


An Inactivation Switch Enables Rhythms in a Neurospora Clock Model.

Upadhyay A, Brunner M, Herzel H.

Int J Mol Sci. 2019 Jun 19;20(12). pii: E2985. doi: 10.3390/ijms20122985.


NCALD Antisense Oligonucleotide Therapy in Addition to Nusinersen further Ameliorates Spinal Muscular Atrophy in Mice.

Torres-Benito L, Schneider S, Rombo R, Ling KK, Grysko V, Upadhyay A, Kononenko NL, Rigo F, Bennett CF, Wirth B.

Am J Hum Genet. 2019 Jul 3;105(1):221-230. doi: 10.1016/j.ajhg.2019.05.008. Epub 2019 Jun 20.


Perceptions of commercial snack food and beverages for infant and young child feeding: A mixed-methods study among caregivers in Kathmandu Valley, Nepal.

Sharma N, Ferguson EL, Upadhyay A, Zehner E, Filteau S, Pries AM.

Matern Child Nutr. 2019 Jun;15 Suppl 4:e12711. doi: 10.1111/mcn.12711.


Energy intake from unhealthy snack food/beverage among 12-23-month-old children in urban Nepal.

Pries AM, Sharma N, Upadhyay A, Rehman AM, Filteau S, Ferguson EL.

Matern Child Nutr. 2019 Jun;15 Suppl 4:e12775. doi: 10.1111/mcn.12775.


Rare actinobacteria: a potential source of bioactive polyketides and peptides.

Bundale S, Singh J, Begde D, Nashikkar N, Upadhyay A.

World J Microbiol Biotechnol. 2019 Jun 11;35(6):92. doi: 10.1007/s11274-019-2668-z.


Dynamics of carbohydrate strands in water and interactions with clay minerals: influence of pH, surface chemistry, and electrolytes.

Jamil T, Gissinger JR, Garley A, Saikia N, Upadhyay AK, Heinz H.

Nanoscale. 2019 Jun 21;11(23):11183-11194. doi: 10.1039/c9nr01867k. Epub 2019 May 31.


Plasma Free Homocysteine Levels in Children with Idiopathic Nephrotic Syndrome.

Arumugam V, Saha A, Kaur M, Deepthi B, Basak T, Sengupta S, Bhatt A, Batra VV, Upadhyay AD.

Indian J Nephrol. 2019 May-Jun;29(3):186-190. doi: 10.4103/ijn.IJN_293_17.


Protocol for the cost-consequence and equity impact analyses of a cluster randomised controlled trial comparing three variants of a nutrition-sensitive agricultural extension intervention to improve maternal and child dietary diversity and nutritional status in rural Odisha, India (UPAVAN trial).

Haghparast-Bidgoli H, Skordis J, Harris-Fry H, Krishnan S, O'Hearn M, Kumar A, Pradhan R, Mishra NK, Upadhyay A, Pradhan S, Ojha AK, Cunningham S, Rath S, Palmer T, Koniz-Booher P, Kadiyala S.

Trials. 2019 May 27;20(1):287. doi: 10.1186/s13063-019-3388-2.


Synthesis, Biological Evaluation, Structure-Activity Relationship, and Mechanism of Action Studies of Quinoline-Metronidazole Derivatives Against Experimental Visceral Leishmaniasis.

Upadhyay A, Chandrakar P, Gupta S, Parmar N, Singh SK, Rashid M, Kushwaha P, Wahajuddin M, Sashidhara KV, Kar S.

J Med Chem. 2019 Jun 13;62(11):5655-5671. doi: 10.1021/acs.jmedchem.9b00628. Epub 2019 May 24.


Initial Experience of Retroperitoneoscopic Surgery in Benign Renal Diseases.

Kunwar AK, Upadhyay AM, Shrestha SB, Koirala U, Tiwari K, Dangal G.

J Nepal Health Res Counc. 2019 Apr 28;17(1):94-99. doi: 10.33314/jnhrc.1772.


Correlation of body mass index (BMI), anti-mullerian hormone (AMH), and insulin resistance among different polycystic ovary syndrome (PCOS) phenotypes - a cross-sectional study.

Gupta M, Yadav R, Mahey R, Agrawal A, Upadhyay A, Malhotra N, Bhatla N.

Gynecol Endocrinol. 2019 May 12:1-4. doi: 10.1080/09513590.2019.1613640. [Epub ahead of print]


Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance.

Cirelli KM, Carnathan DG, Nogal B, Martin JT, Rodriguez OL, Upadhyay AA, Enemuo CA, Gebru EH, Choe Y, Viviano F, Nakao C, Pauthner MG, Reiss S, Cottrell CA, Smith ML, Bastidas R, Gibson W, Wolabaugh AN, Melo MB, Cossette B, Kumar V, Patel NB, Tokatlian T, Menis S, Kulp DW, Burton DR, Murrell B, Schief WR, Bosinger SE, Ward AB, Watson CT, Silvestri G, Irvine DJ, Crotty S.

Cell. 2019 May 16;177(5):1153-1171.e28. doi: 10.1016/j.cell.2019.04.012. Epub 2019 May 9.


Prevalence of submicroscopic malaria in low transmission state of Punjab: A potential threat to malaria elimination.

Kaura T, Kaur J, Sharma A, Dhiman A, Pangotra M, Upadhyay AK, Grover GS, Sharma SK.

J Vector Borne Dis. 2019 Jan-Mar;56(1):78-84. doi: 10.4103/0972-9062.257780.


Time-restricted feeding reduces high-fat diet associated placental inflammation and limits adverse effects on fetal organ development.

Upadhyay A, Anjum B, Godbole NM, Rajak S, Shukla P, Tiwari S, Sinha RA, Godbole MM.

Biochem Biophys Res Commun. 2019 Jun 25;514(2):415-421. doi: 10.1016/j.bbrc.2019.04.154. Epub 2019 May 1.


The transcriptome enables the identification of candidate genes behind medicinal value of Drumstick tree (Moringa oleifera).

Pasha SN, Shafi KM, Joshi AG, Meenakshi I, Harini K, Mahita J, Sajeevan RS, Karpe SD, Ghosh P, Nitish S, Gandhimathi A, Mathew OK, Prasanna SH, Malini M, Mutt E, Naika M, Ravooru N, Rao RM, Shingate PN, Sukhwal A, Sunitha MS, Upadhyay AK, Vinekar RS, Sowdhamini R.

Genomics. 2019 Apr 29. pii: S0888-7543(18)30690-6. doi: 10.1016/j.ygeno.2019.04.014. [Epub ahead of print]


Sustainable Graphene Aerogel as an Ecofriendly Cell Growth Promoter and Highly Efficient Adsorbent for Histamine from Red Wine.

Shukla S, Khan I, Bajpai VK, Lee H, Kim T, Upadhyay A, Huh YS, Han YK, Tripathi KM.

ACS Appl Mater Interfaces. 2019 May 22;11(20):18165-18177. doi: 10.1021/acsami.9b02857. Epub 2019 May 7.


Structure of proteins: Evolution with unsolved mysteries.

Upadhyay A.

Prog Biophys Mol Biol. 2019 Apr 20. pii: S0079-6107(19)30050-1. doi: 10.1016/j.pbiomolbio.2019.04.007. [Epub ahead of print] Review.


Polyphenolic flavonoid (Myricetin) upregulated proteasomal degradation mechanisms: Eliminates neurodegenerative proteins aggregation.

Joshi V, Mishra R, Upadhyay A, Amanullah A, Poluri KM, Singh S, Kumar A, Mishra A.

J Cell Physiol. 2019 Nov;234(11):20900-20914. doi: 10.1002/jcp.28695. Epub 2019 Apr 19.


Carvacrol antimicrobial wash treatments reduce Campylobacter jejuni and aerobic bacteria on broiler chicken skin.

Shrestha S, Wagle BR, Upadhyay A, Arsi K, Donoghue DJ, Donoghue AM.

Poult Sci. 2019 Sep 1;98(9):4073-4083. doi: 10.3382/ps/pez198.


Craniotomy with ridges: a time and cost-efficient technique for unwavering fixation of bone flap.

Upadhyay AK, Husain M, Manu R.

Turk Neurosurg. 2018 Nov 2. doi: 10.5137/1019-5149.JTN.22181-17.3. [Epub ahead of print]


Edible Coatings Fortified With Carvacrol Reduce Campylobacter jejuni on Chicken Wingettes and Modulate Expression of Select Virulence Genes.

Shrestha S, Wagle BR, Upadhyay A, Arsi K, Upadhyaya I, Donoghue DJ, Donoghue AM.

Front Microbiol. 2019 Mar 21;10:583. doi: 10.3389/fmicb.2019.00583. eCollection 2019.


Interspersed 5'cis-regulatory elements ascertain the spatio-temporal transcription of cytoskeletal profilin gene family in Arabidopsis.

Upadhyay AK, Arora S, Pandey DK, Chaudhary B.

Comput Biol Chem. 2019 Jun;80:177-186. doi: 10.1016/j.compbiolchem.2019.03.023. Epub 2019 Apr 2.


Optimization of media components for the production of N-acetylchitooligosaccharide from chitin by Streptomyces chilikensis through Taguchi experimental design.

Behera HT, Upadhyay AK, Raina V, Ray L.

J Microbiol Methods. 2019 Apr;159:194-199. doi: 10.1016/j.mimet.2019.03.014. Epub 2019 Mar 16.


Accountability for funds for Nurturing Care: what can we measure?

Arregoces L, Hughes R, Milner KM, Ponce Hardy V, Tann C, Upadhyay A, Lawn JE.

Arch Dis Child. 2019 Apr;104(Suppl 1):S34-S42. doi: 10.1136/archdischild-2018-315429.


Neurocalcin Delta Knockout Impairs Adult Neurogenesis Whereas Half Reduction Is Not Pathological.

Upadhyay A, Hosseinibarkooie S, Schneider S, Kaczmarek A, Torres-Benito L, Mendoza-Ferreira N, Overhoff M, Rombo R, Grysko V, Kye MJ, Kononenko NL, Wirth B.

Front Mol Neurosci. 2019 Feb 12;12:19. doi: 10.3389/fnmol.2019.00019. eCollection 2019.


LRSAM1 E3 ubiquitin ligase: molecular neurobiological perspectives linked with brain diseases.

Mishra R, Upadhyay A, Prajapati VK, Dhiman R, Poluri KM, Jana NR, Mishra A.

Cell Mol Life Sci. 2019 Jun;76(11):2093-2110. doi: 10.1007/s00018-019-03055-y. Epub 2019 Mar 2. Review.


Genome-wide characterization revealed role of NBS-LRR genes during powdery mildew infection in Vitis vinifera.

Goyal N, Bhatia G, Sharma S, Garewal N, Upadhyay A, Upadhyay SK, Singh K.

Genomics. 2019 Feb 22. pii: S0888-7543(18)30732-8. doi: 10.1016/j.ygeno.2019.02.011. [Epub ahead of print]


Antioxidants for Pancreatic Functions in Chronic Pancreatitis: A Double-blind Randomized Placebo-controlled Pilot Study.

Singh N, Ahuja V, Sachdev V, Upadhyay AD, Goswami R, Ramakrishnan L, Dwivedi S, Saraya A.

J Clin Gastroenterol. 2019 Feb 15. doi: 10.1097/MCG.0000000000001178. [Epub ahead of print]


Optogenetic and transcriptomic interrogation of enhanced muscle function in the paralyzed mouse whisker pad.

Vajtay TJ, Bandi A, Upadhyay A, Swerdel MR, Hart RP, Lee CR, Margolis DJ.

J Neurophysiol. 2019 Apr 1;121(4):1491-1500. doi: 10.1152/jn.00837.2018. Epub 2019 Feb 20.


Virulence typing and antibiotic susceptibility profiling of thermophilic Campylobacters isolated from poultry, animal, and human species.

Rawat N, Maansi, Kumar D, Upadhyay AK.

Vet World. 2018 Dec;11(12):1698-1705. doi: 10.14202/vetworld.2018.1698-1705. Epub 2018 Dec 19.


Pediatric Appropriate Evaluation Protocol for India (PAEP-India): Tool for Assessing Appropriateness of Pediatric Hospitalization.

Das MK, Arora NK, Poluru R, Seth A, Aggarwal A, Dubey AP, Goyal PC, Gathwala G, Malik A, Goel AK, Chakravarty A, Arya S, Upadhyay A, Gupta M, Mathew T, Pillai RK, Mathai J, Manivasagan S, Ramesh S, Aggarwal MK, Maure CG, Zuber PL.

Indian Pediatr. 2018 Dec 15;55(12):1041-1045.


A simple and rapid colorimetric method for the estimation of chitosan produced by microbial degradation of chitin waste.

Mojumdar A, Upadhyay AK, Raina V, Ray L.

J Microbiol Methods. 2019 Mar;158:66-70. doi: 10.1016/j.mimet.2019.02.001. Epub 2019 Feb 3.


Genome-Wide Analysis of Domain-Swap Predicted Products in the Genome of Anti-Stress Medicinal Plant: Ocimum tenuiflorum.

Upadhyay AK, Sowdhamini R.

Bioinform Biol Insights. 2019 Jan 9;13:1177932218821362. doi: 10.1177/1177932218821362. eCollection 2019.


Ag(I) and Au(III) Mercaptobenzothiazole complexes induced apoptotic cell death.

Sherine J, Upadhyay A, Mishra A, Kumar D, Pal S, Harinipriya S.

Sci Rep. 2019 Jan 24;9(1):621. doi: 10.1038/s41598-018-36801-6.


Pigmented paravenous retinochoroidal atrophy.

Deshmukh S, Das D, Deka H, Bhattacharjee H, Upadhyay A, Gupta K.

Indian J Ophthalmol. 2019 Feb;67(2):271-273. doi: 10.4103/ijo.IJO_1202_18. No abstract available.


West Nile Virus-Inclusive Single-Cell RNA Sequencing Reveals Heterogeneity in the Type I Interferon Response within Single Cells.

O'Neal JT, Upadhyay AA, Wolabaugh A, Patel NB, Bosinger SE, Suthar MS.

J Virol. 2019 Mar 5;93(6). pii: e01778-18. doi: 10.1128/JVI.01778-18. Print 2019 Mar 15.


Randomized Controlled Trial of A 12-Week Yoga-Based (Including Diet) Lifestyle vs. Dietary Intervention on Cardio-Metabolic Risk Factors and Continuous Risk Score in Indian Adults with Metabolic Syndrome.

Yadav R, Yadav RK, Khadgawat R, Pandey RM, Upadhyay AD, Mehta N.

Behav Med. 2019 Jan 7:1-12. doi: 10.1080/08964289.2018.1538098. [Epub ahead of print]


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