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Draft Genome Sequences of Campylobacter jejuni Strains Isolated from Poultry.

Wagle BR, Marasini D, Upadhyaya I, Shrestha S, Arsi K, Donoghue AM, Carbonero F, Donoghue DJ, Maas K, Upadhyay A.

Microbiol Resour Announc. 2020 Feb 13;9(7). pii: e01272-19. doi: 10.1128/MRA.01272-19.


How autophagy can restore proteostasis defects in multiple diseases?

Joshi V, Upadhyay A, Prajapati VK, Mishra A.

Med Res Rev. 2020 Feb 11. doi: 10.1002/med.21662. [Epub ahead of print] Review.


Workshop on Adverse Drug Reaction Reporting, Pharmacovigilance and Its Implementation in Cancer Hospital in Nepal: An Event Report.

Shrestha S, Shrestha R, Abidi A, Upadhyay A, Khanal T, Adhikari B, Ghimire BR.

Adv Med Educ Pract. 2020 Jan 8;11:9-14. doi: 10.2147/AMEP.S225208. eCollection 2020.


Fluorescent immunoliposomal nanovesicles for rapid multi-well immuno-biosensing of histamine in fish samples.

Bajpai VK, Oh C, Khan I, Haldorai Y, Gandhi S, Lee H, Song X, Kim M, Upadhyay A, Chen L, Huh YS, Han YK, Shukla S.

Chemosphere. 2020 Mar;243:125404. doi: 10.1016/j.chemosphere.2019.125404. Epub 2019 Nov 21.


Ubiquitin ligase LRSAM1 suppresses neurodegenerative diseases linked aberrant proteins induced cell death.

Mishra R, Amanullah A, Upadhyay A, Dhiman R, Dubey AR, Singh S, Prasad A, Mishra A.

Int J Biochem Cell Biol. 2020 Mar;120:105697. doi: 10.1016/j.biocel.2020.105697. Epub 2020 Jan 23.


Cardiac Changes in Hypothyroidism by Echocardiography.

Bhattacharya A, Upadhyay A, Panchal V.

J Assoc Physicians India. 2020 Jan;68(1):44. No abstract available.


Systemic HIV and SIV latency reversal via non-canonical NF-κB signalling in vivo.

Nixon CC, Mavigner M, Sampey GC, Brooks AD, Spagnuolo RA, Irlbeck DM, Mattingly C, Ho PT, Schoof N, Cammon CG, Tharp GK, Kanke M, Wang Z, Cleary RA, Upadhyay AA, De C, Wills SR, Falcinelli SD, Galardi C, Walum H, Schramm NJ, Deutsch J, Lifson JD, Fennessey CM, Keele BF, Jean S, Maguire S, Liao B, Browne EP, Ferris RG, Brehm JH, Favre D, Vanderford TH, Bosinger SE, Jones CD, Routy JP, Archin NM, Margolis DM, Wahl A, Dunham RM, Silvestri G, Chahroudi A, Garcia JV.

Nature. 2020 Feb;578(7793):160-165. doi: 10.1038/s41586-020-1951-3. Epub 2020 Jan 22.


How Bacterial Chemoreceptors Evolve Novel Ligand Specificities.

Gavira JA, Gumerov VM, Rico-Jiménez M, Petukh M, Upadhyay AA, Ortega A, Matilla MA, Zhulin IB, Krell T.

mBio. 2020 Jan 21;11(1). pii: e03066-19. doi: 10.1128/mBio.03066-19.


Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance.

Cirelli KM, Carnathan DG, Nogal B, Martin JT, Rodriguez OL, Upadhyay AA, Enemuo CA, Gebru EH, Choe Y, Viviano F, Nakao C, Pauthner MG, Reiss S, Cottrell CA, Smith ML, Bastidas R, Gibson W, Wolabaugh AN, Melo MB, Cossette B, Kumar V, Patel NB, Tokatlian T, Menis S, Kulp DW, Burton DR, Murrell B, Schief WR, Bosinger SE, Ward AB, Watson CT, Silvestri G, Irvine DJ, Crotty S.

Cell. 2020 Jan 9;180(1):206. doi: 10.1016/j.cell.2019.12.027. No abstract available.


Biological Mechanisms of Atropine Control of Myopia.

Upadhyay A, Beuerman RW.

Eye Contact Lens. 2020 Jan 2. doi: 10.1097/ICL.0000000000000677. [Epub ahead of print]


Socio-economic inequality in malnutrition among children in India: an analysis of 640 districts from National Family Health Survey (2015-16).

Singh S, Srivastava S, Upadhyay AK.

Int J Equity Health. 2019 Dec 27;18(1):203. doi: 10.1186/s12939-019-1093-0.


Transcriptome analysis reveals plasticity in gene regulation due to environmental cues in Primula sikkimensis, a high altitude plant species.

Gurung PD, Upadhyay AK, Bhardwaj PK, Sowdhamini R, Ramakrishnan U.

BMC Genomics. 2019 Dec 17;20(1):989. doi: 10.1186/s12864-019-6354-1.


Exploratory Analysis of Nutritional Quality and Metrics of Snack Consumption among Nepali Children during the Complementary Feeding Period.

Pries AM, Ferguson EL, Sharma N, Upadhyay A, Filteau S.

Nutrients. 2019 Dec 4;11(12). pii: E2962. doi: 10.3390/nu11122962.


CytoMegaloVirus Infection Database: A Public Omics Database for Systematic and Comparable Information of CMV.

Kaushik AC, Mehmood A, Upadhyay AK, Paul S, Srivastava S, Mali P, Xiong Y, Dai X, Wei DQ, Sahi S.

Interdiscip Sci. 2019 Dec 7. doi: 10.1007/s12539-019-00350-x. [Epub ahead of print]


Comparative Proteomics Unravels the Differences in Salt Stress Response of Own-Rooted and 110R-Grafted Thompson Seedless Grapevines.

Patil S, Shinde M, Prashant R, Kadoo N, Upadhyay A, Gupta V.

J Proteome Res. 2020 Feb 7;19(2):583-599. doi: 10.1021/acs.jproteome.9b00420. Epub 2019 Dec 20.


Pustular Vasculitis: Different Names for Same Entity?

Kaushik SB, Upadhyay AA, Routt E, Phelps R.

Indian Dermatol Online J. 2019 Nov 1;10(6):721-723. doi: 10.4103/idoj.IDOJ_415_18. eCollection 2019 Nov-Dec. No abstract available.


Review of Antibiotic Resistance, Ecology, Dissemination, and Mitigation in U.S. Broiler Poultry Systems.

Yang Y, Ashworth AJ, Willett C, Cook K, Upadhyay A, Owens PR, Ricke SC, DeBruyn JM, Moore PA Jr.

Front Microbiol. 2019 Nov 15;10:2639. doi: 10.3389/fmicb.2019.02639. eCollection 2019. Review.


Clinical and ASOCT evaluations of 'bleb-sparing epithelial exchange' in paediatric and adult dysfunctional blebs over 5 years.

Sihota R, Selvan H, Sidhu T, Kamble N, Angmo D, Yadav S, Dada T, Upadhyay A.

Graefes Arch Clin Exp Ophthalmol. 2020 Feb;258(2):367-377. doi: 10.1007/s00417-019-04527-4. Epub 2019 Nov 25.


Photocytotoxic cancer cell-targeting platinum(ii) complexes of glucose-appended curcumin and biotinylated 1,10-phenanthroline.

Upadhyay A, Gautam S, Ramu V, Kondaiah P, Chakravarty AR.

Dalton Trans. 2019 Dec 3;48(47):17556-17565. doi: 10.1039/c9dt03490k.


Predictors of Health-Related Quality of Life in Indians with Metabolic Syndrome Undergoing Randomized Controlled Trial of Yoga-Based Lifestyle Intervention vs Dietary Intervention.

Yadav R, Yadav RK, Pandey RM, Upadhyay AD.

Behav Med. 2019 Nov 19:1-10. doi: 10.1080/08964289.2019.1683711. [Epub ahead of print]


Narrow Band Imaging: An Effective and Early Diagnostic Tool in Diagnosis of Oral Malignant Lesions.

Upadhyay A, Saraswathi N, Mundra RK.

Indian J Otolaryngol Head Neck Surg. 2019 Oct;71(Suppl 1):967-971. doi: 10.1007/s12070-019-01650-w. Epub 2019 Apr 16.


A Comprehensive Voice Analysis in Benign Vocal Fold Lesions Treated by Cold Knife Endolaryngeal Surgery Using Subjective, Objective and Video-Stroboscopic Parameters.

Singh A, Upadhyay A, Shrivastava A, Mundra RK.

Indian J Otolaryngol Head Neck Surg. 2019 Oct;71(Suppl 1):905-911. doi: 10.1007/s12070-019-01638-6. Epub 2019 Mar 30.


A Comprehensive Analysis of Benign Vocal Fold Lesions Causing Hoarseness of Voice and Our Experience with Cold Knife Endolaryngeal Surgery in a Tertiary Healthcare Centre.

Upadhyay A, Zaidi AK, Mundra RK.

Indian J Otolaryngol Head Neck Surg. 2019 Oct;71(Suppl 1):515-521. doi: 10.1007/s12070-018-1377-5. Epub 2018 Apr 30.


Rapid Germinal Center and Antibody Responses in Non-human Primates after a Single Nanoparticle Vaccine Immunization.

Havenar-Daughton C, Carnathan DG, Boopathy AV, Upadhyay AA, Murrell B, Reiss SM, Enemuo CA, Gebru EH, Choe Y, Dhadvai P, Viviano F, Kaushik K, Bhiman JN, Briney B, Burton DR, Bosinger SE, Schief WR, Irvine DJ, Silvestri G, Crotty S.

Cell Rep. 2019 Nov 12;29(7):1756-1766.e8. doi: 10.1016/j.celrep.2019.10.008.


Association between unintended births and risk of postpartum depression: Evidence from Ethiopia, India, Peru and Vietnam.

Upadhyay AK, Singh A, Singh A.

SSM Popul Health. 2019 Oct 4;9:100495. doi: 10.1016/j.ssmph.2019.100495. eCollection 2019 Dec.


Smart Hydrogels in Tissue Engineering and Regenerative Medicine.

Mantha S, Pillai S, Khayambashi P, Upadhyay A, Zhang Y, Tao O, Pham HM, Tran SD.

Materials (Basel). 2019 Oct 12;12(20). pii: E3323. doi: 10.3390/ma12203323. Review.


Sestrin2 as serum protein marker and potential therapeutic target for Parkinson's Disease.

Rai N, Upadhyay AD, Goyal V, Dwivedi S, Dey AB, Dey S.

J Gerontol A Biol Sci Med Sci. 2019 Oct 9. pii: glz234. doi: 10.1093/gerona/glz234. [Epub ahead of print]


Body Size and Tissue-Scaling Is Regulated by Motoneuron-Derived Activinß in Drosophila melanogaster.

Moss-Taylor L, Upadhyay A, Pan X, Kim MJ, O'Connor MB.

Genetics. 2019 Dec;213(4):1447-1464. doi: 10.1534/genetics.119.302394. Epub 2019 Oct 4.


A Prospective Outcome Assessment After Bronchoscopic Interventions for Malignant Central Airway Obstruction.

Mohan A, Shrestha P, Madan K, Hadda V, Pandey RM, Upadhyay A, Khilnani GC, Guleria R.

J Bronchology Interv Pulmonol. 2019 Sep 26. doi: 10.1097/LBR.0000000000000624. [Epub ahead of print]


NMR-based fragment screening and lead discovery accelerated by principal component analysis.

Namanja AT, Xu J, Wu H, Sun Q, Upadhyay AK, Sun C, Van Doren SR, Petros AM.

J Biomol NMR. 2019 Dec;73(12):675-685. doi: 10.1007/s10858-019-00279-9. Epub 2019 Sep 20.


Inactivation of PP2A by a recurrent mutation drives resistance to MEK inhibitors.

O'Connor CM, Leonard D, Wiredja D, Avelar RA, Wang Z, Schlatzer D, Bryson B, Tokala E, Taylor SE, Upadhyay A, Sangodkar J, Gingras AC, Westermarck J, Xu W, DiFeo A, Brautigan DL, Haider S, Jackson M, Narla G.

Oncogene. 2020 Jan;39(3):703-717. doi: 10.1038/s41388-019-1012-2. Epub 2019 Sep 20.


Dialyzer reuse: is it safe and worth it?

Upadhyay A.

J Bras Nefrol. 2019 Sep 2;41(3):312-314. doi: 10.1590/2175-8239-JBN-2019-0134. English, Portuguese. No abstract available.


Association of endotoxaemia & gut permeability with complications of acute pancreatitis: Secondary analysis of data.

Singh N, Sonika U, Moka P, Sharma B, Sachdev V, Mishra SK, Upadhyay AD, Saraya A.

Indian J Med Res. 2019 Jun;149(6):763-770. doi: 10.4103/ijmr.IJMR_763_17.


New evidence on the impact of the quality of prenatal care on neonatal and infant mortality in India.

Upadhyay AK, Singh A, Srivastava S.

J Biosoc Sci. 2019 Sep 9:1-13. doi: 10.1017/S0021932019000543. [Epub ahead of print]


Trans-Cinnamaldehyde, Eugenol and Carvacrol Reduce Campylobacter jejuni Biofilms and Modulate Expression of Select Genes and Proteins.

Wagle BR, Upadhyay A, Upadhyaya I, Shrestha S, Arsi K, Liyanage R, Venkitanarayanan K, Donoghue DJ, Donoghue AM.

Front Microbiol. 2019 Aug 7;10:1837. doi: 10.3389/fmicb.2019.01837. eCollection 2019.


Microbubble Radiation Force-Induced Translation in Plane-Wave Versus Focused Transmission Modes.

Guidi F, Supponen O, Upadhyay A, Vos HJ, Borden MA, Tortoli P.

IEEE Trans Ultrason Ferroelectr Freq Control. 2019 Dec;66(12):1856-1865. doi: 10.1109/TUFFC.2019.2937158. Epub 2019 Aug 23.


Higher education, professional occupation, and upper socioeconomic status are associated with lower adherence to medications in patients with inflammatory bowel disease.

Tomar SK, Kedia S, Singh N, Upadhyay AD, Kamat N, Bopanna S, Yadav DP, Goyal S, Jain S, Makharia G, Ahuja V.

JGH Open. 2019 Mar 18;3(4):302-309. doi: 10.1002/jgh3.12160. eCollection 2019 Aug.


Hyperacute spontaneous closure of a traumatic macular hole in a colobomatous eye.

Misra DK, Barman M, Deori N, Upadhyay A.

Am J Ophthalmol Case Rep. 2019 Jun 27;15:100504. doi: 10.1016/j.ajoc.2019.100504. eCollection 2019 Sep.


Unhealthy Snack Food and Beverage Consumption Is Associated with Lower Dietary Adequacy and Length-for-Age z-Scores among 12-23-Month-Olds in Kathmandu Valley, Nepal.

Pries AM, Rehman AM, Filteau S, Sharma N, Upadhyay A, Ferguson EL.

J Nutr. 2019 Oct 1;149(10):1843-1851. doi: 10.1093/jn/nxz140.


Impact of adjuvant therapy on survival in patients with myoepithelial carcinoma: A systematic review and individual patient data analysis of 691 patients.

Giridhar P, Gupta P, Mallick S, Upadhyay AD, Rath GK.

Radiother Oncol. 2019 Nov;140:125-130. doi: 10.1016/j.radonc.2019.06.017. Epub 2019 Jul 2. Review.


An Inactivation Switch Enables Rhythms in a Neurospora Clock Model.

Upadhyay A, Brunner M, Herzel H.

Int J Mol Sci. 2019 Jun 19;20(12). pii: E2985. doi: 10.3390/ijms20122985.


NCALD Antisense Oligonucleotide Therapy in Addition to Nusinersen further Ameliorates Spinal Muscular Atrophy in Mice.

Torres-Benito L, Schneider S, Rombo R, Ling KK, Grysko V, Upadhyay A, Kononenko NL, Rigo F, Bennett CF, Wirth B.

Am J Hum Genet. 2019 Jul 3;105(1):221-230. doi: 10.1016/j.ajhg.2019.05.008. Epub 2019 Jun 20.


Perceptions of commercial snack food and beverages for infant and young child feeding: A mixed-methods study among caregivers in Kathmandu Valley, Nepal.

Sharma N, Ferguson EL, Upadhyay A, Zehner E, Filteau S, Pries AM.

Matern Child Nutr. 2019 Jun;15 Suppl 4:e12711. doi: 10.1111/mcn.12711.


Energy intake from unhealthy snack food/beverage among 12-23-month-old children in urban Nepal.

Pries AM, Sharma N, Upadhyay A, Rehman AM, Filteau S, Ferguson EL.

Matern Child Nutr. 2019 Jun;15 Suppl 4:e12775. doi: 10.1111/mcn.12775.


Rare actinobacteria: a potential source of bioactive polyketides and peptides.

Bundale S, Singh J, Begde D, Nashikkar N, Upadhyay A.

World J Microbiol Biotechnol. 2019 Jun 11;35(6):92. doi: 10.1007/s11274-019-2668-z.


Dynamics of carbohydrate strands in water and interactions with clay minerals: influence of pH, surface chemistry, and electrolytes.

Jamil T, Gissinger JR, Garley A, Saikia N, Upadhyay AK, Heinz H.

Nanoscale. 2019 Jun 21;11(23):11183-11194. doi: 10.1039/c9nr01867k. Epub 2019 May 31.


Plasma Free Homocysteine Levels in Children with Idiopathic Nephrotic Syndrome.

Arumugam V, Saha A, Kaur M, Deepthi B, Basak T, Sengupta S, Bhatt A, Batra VV, Upadhyay AD.

Indian J Nephrol. 2019 May-Jun;29(3):186-190. doi: 10.4103/ijn.IJN_293_17.

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