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Items: 1 to 50 of 193

1.

Publisher Correction: Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.

Sage D, Pham TA, Babcock H, Lukes T, Pengo T, Chao J, Velmurugan R, Herbert A, Agrawal A, Colabrese S, Wheeler A, Archetti A, Rieger B, Ober R, Hagen GM, Sibarita JB, Ries J, Henriques R, Unser M, Holden S.

Nat Methods. 2019 Jun;16(6):561. doi: 10.1038/s41592-019-0453-4.

PMID:
31097821
2.

Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.

Sage D, Pham TA, Babcock H, Lukes T, Pengo T, Chao J, Velmurugan R, Herbert A, Agrawal A, Colabrese S, Wheeler A, Archetti A, Rieger B, Ober R, Hagen GM, Sibarita JB, Ries J, Henriques R, Unser M, Holden S.

Nat Methods. 2019 May;16(5):387-395. doi: 10.1038/s41592-019-0364-4. Epub 2019 Apr 8. Erratum in: Nat Methods. 2019 Jun;16(6):561.

3.

Imaging cellular ultrastructures using expansion microscopy (U-ExM).

Gambarotto D, Zwettler FU, Le Guennec M, Schmidt-Cernohorska M, Fortun D, Borgers S, Heine J, Schloetel JG, Reuss M, Unser M, Boyden ES, Sauer M, Hamel V, Guichard P.

Nat Methods. 2019 Jan;16(1):71-74. doi: 10.1038/s41592-018-0238-1. Epub 2018 Dec 17.

4.

Multimodal imaging and high-throughput image-processing for drug screening on living organisms on-chip.

Migliozzi D, Cornaglia M, Mouchiroud L, Uhlmann V, Unser MA, Auwerx J, Gijs MAM.

J Biomed Opt. 2018 Nov;24(2):1-9. doi: 10.1117/1.JBO.24.2.021205.

5.

Imaging neural activity in the ventral nerve cord of behaving adult Drosophila.

Chen CL, Hermans L, Viswanathan MC, Fortun D, Aymanns F, Unser M, Cammarato A, Dickinson MH, Ramdya P.

Nat Commun. 2018 Oct 22;9(1):4390. doi: 10.1038/s41467-018-06857-z.

6.

Fast multiscale reconstruction for Cryo-EM.

Donati L, Nilchian M, Sorzano COS, Unser M.

J Struct Biol. 2018 Dec;204(3):543-554. doi: 10.1016/j.jsb.2018.09.008. Epub 2018 Sep 24.

7.

Fast Piecewise-Affine Motion Estimation Without Segmentation.

Fortun D, Storath M, Rickert D, Weinmann A, Unser M.

IEEE Trans Image Process. 2018 Jul 23. doi: 10.1109/TIP.2018.2856399. [Epub ahead of print]

PMID:
30040638
8.

Grid-Free Localization Algorithm Using Low-rank Hankel Matrix for Super-Resolution Microscopy.

Min J, Jin KH, Unser M, Ye JC.

IEEE Trans Image Process. 2018 Jun 6. doi: 10.1109/TIP.2018.2843718. [Epub ahead of print]

PMID:
29994207
9.

CNN-Based Projected Gradient Descent for Consistent CT Image Reconstruction.

Gupta H, Jin KH, Nguyen HQ, McCann MT, Unser M.

IEEE Trans Med Imaging. 2018 Jun;37(6):1440-1453. doi: 10.1109/TMI.2018.2832656.

PMID:
29870372
10.

Reconstruction From Multiple Particles for 3D Isotropic Resolution in Fluorescence Microscopy.

Fortun D, Guichard P, Hamel V, Sorzano COS, Banterle N, Gonczy P, Unser M.

IEEE Trans Med Imaging. 2018 May;37(5):1235-1246. doi: 10.1109/TMI.2018.2795464.

PMID:
29727286
11.

Versatile reconstruction framework for diffraction tomography with intensity measurements and multiple scattering.

Pham TA, Soubies E, Goy A, Lim J, Soulez F, Psaltis D, Unser M.

Opt Express. 2018 Feb 5;26(3):2749-2763. doi: 10.1364/OE.26.002749.

PMID:
29401811
12.

Compact in-line lensfree digital holographic microscope.

Rostykus M, Soulez F, Unser M, Moser C.

Methods. 2018 Mar 1;136:17-23. doi: 10.1016/j.ymeth.2017.11.008. Epub 2017 Nov 21.

13.

Efficient inversion of multiple-scattering model for optical diffraction tomography.

Soubies E, Pham TA, Unser M.

Opt Express. 2017 Sep 4;25(18):21786-21800. doi: 10.1364/OE.25.021786.

PMID:
29041472
14.

DiversePathsJ: diverse shortest paths for bioimage analysis.

Uhlmann V, Haubold C, Hamprecht FA, Unser M.

Bioinformatics. 2018 Feb 1;34(3):538-540. doi: 10.1093/bioinformatics/btx621.

15.

Landmark-Based Shape Encoding and Sparse-Dictionary Learning in the Continuous Domain.

Schmitter D, Unser M.

IEEE Trans Image Process. 2018 Jan;27(1):365-378. doi: 10.1109/TIP.2017.2762582. Epub 2017 Oct 12.

PMID:
29028193
16.

Fast Segmentation From Blurred Data in 3D Fluorescence Microscopy.

Storath M, Rickert D, Unser M, Weinmann A.

IEEE Trans Image Process. 2017 Oct;26(10):4856-4870. doi: 10.1109/TIP.2017.2716843. Epub 2017 Jun 16.

PMID:
28641257
17.

Deep Convolutional Neural Network for Inverse Problems in Imaging.

Kyong Hwan Jin, McCann MT, Froustey E, Unser M.

IEEE Trans Image Process. 2017 Sep;26(9):4509-4522. doi: 10.1109/TIP.2017.2713099. Epub 2017 Jun 15.

PMID:
28641250
18.

High-Quality Parallel-Ray X-Ray CT Back Projection Using Optimized Interpolation.

McCann MT, Unser M.

IEEE Trans Image Process. 2017 Oct;26(10):4639-4647. doi: 10.1109/TIP.2017.2706521. Epub 2017 May 23.

PMID:
28541206
19.

FlyLimbTracker: An active contour based approach for leg segment tracking in unmarked, freely behaving Drosophila.

Uhlmann V, Ramdya P, Delgado-Gonzalo R, Benton R, Unser M.

PLoS One. 2017 Apr 28;12(4):e0173433. doi: 10.1371/journal.pone.0173433. eCollection 2017.

20.

Compressed sensing for STEM tomography.

Donati L, Nilchian M, Trépout S, Messaoudi C, Marco S, Unser M.

Ultramicroscopy. 2017 Aug;179:47-56. doi: 10.1016/j.ultramic.2017.04.003. Epub 2017 Apr 6.

21.

Pancreatic α- and β-cellular clocks have distinct molecular properties and impact on islet hormone secretion and gene expression.

Petrenko V, Saini C, Giovannoni L, Gobet C, Sage D, Unser M, Heddad Masson M, Gu G, Bosco D, Gachon F, Philippe J, Dibner C.

Genes Dev. 2017 Feb 15;31(4):383-398. doi: 10.1101/gad.290379.116. Epub 2017 Mar 8.

22.

Compact lensless phase imager.

Rostykus M, Soulez F, Unser M, Moser C.

Opt Express. 2017 Feb 20;25(4):4438-4445. doi: 10.1364/OE.25.004438.

PMID:
28241646
23.

Steerable Wavelet Machines (SWM): Learning Moving Frames for Texture Classification.

Depeursinge A, Puspoki Z, Ward JP, Unser M.

IEEE Trans Image Process. 2017 Apr;26(4):1626-1636. doi: 10.1109/TIP.2017.2655438. Epub 2017 Jan 18.

PMID:
28103556
24.

DeconvolutionLab2: An open-source software for deconvolution microscopy.

Sage D, Donati L, Soulez F, Fortun D, Schmit G, Seitz A, Guiet R, Vonesch C, Unser M.

Methods. 2017 Feb 15;115:28-41. doi: 10.1016/j.ymeth.2016.12.015. Epub 2017 Jan 3. Review.

25.

Multiresolution Subdivision Snakes.

Badoual A, Schmitter D, Uhlmann V, Unser M.

IEEE Trans Image Process. 2017 Mar;26(3):1188-1201. doi: 10.1109/TIP.2016.2644263. Epub 2016 Dec 22.

PMID:
28026768
26.

Proximity operators for phase retrieval.

Soulez F, Thiébaut É, Schutz A, Ferrari A, Courbin F, Unser M.

Appl Opt. 2016 Sep 10;55(26):7412-21. doi: 10.1364/AO.55.007412.

PMID:
27661383
27.

Fast 3D reconstruction method for differential phase contrast X-ray CT.

McCann MT, Nilchian M, Stampanoni M, Unser M.

Opt Express. 2016 Jun 27;24(13):14564-81. doi: 10.1364/OE.24.014564.

PMID:
27410609
28.

Transforms and Operators for Directional Bioimage Analysis: A Survey.

Püspöki Z, Storath M, Sage D, Unser M.

Adv Anat Embryol Cell Biol. 2016;219:69-93. doi: 10.1007/978-3-319-28549-8_3. Review.

PMID:
27207363
29.

Joint absorption and phase retrieval in grating-based x-ray radiography.

Nilchian M, Bostan E, Wang Z, Nilchiyan MR, Stampanoni M, Unser M.

Opt Express. 2016 Apr 4;24(7):7253-65. doi: 10.1364/OE.24.007253.

PMID:
27137017
30.

Hermite Snakes With Control of Tangents.

Uhlmann V, Fageot J, Unser M.

IEEE Trans Image Process. 2016 Jun;25(6):2803-2816. doi: 10.1109/TIP.2016.2551363. Epub 2016 Apr 6.

PMID:
27071167
31.

Maximally Localized Radial Profiles for Tight Steerable Wavelet Frames.

Pad P, Uhlmann V, Unser M.

IEEE Trans Image Process. 2016 May;25(5):2275-87. doi: 10.1109/TIP.2016.2545301.

PMID:
27019493
32.

Variational Phase Imaging Using the Transport-of-Intensity Equation.

Bostan E, Froustey E, Nilchian M, Sage D, Unser M.

IEEE Trans Image Process. 2016 Feb;25(2):807-17. doi: 10.1109/TIP.2015.2509249. Epub 2015 Dec 17.

PMID:
26685242
33.

Design of Steerable Wavelets to Detect Multifold Junctions.

Püspöki Z, Uhlmann V, Vonesch C, Unser M.

IEEE Trans Image Process. 2016 Feb;25(2):643-57. doi: 10.1109/TIP.2015.2507981. Epub 2015 Dec 11.

PMID:
26685237
34.

SpotCaliper: fast wavelet-based spot detection with accurate size estimation.

Püspöki Z, Sage D, Ward JP, Unser M.

Bioinformatics. 2016 Apr 15;32(8):1278-80. doi: 10.1093/bioinformatics/btv728. Epub 2015 Dec 10.

PMID:
26656569
35.

3D high-density localization microscopy using hybrid astigmatic/ biplane imaging and sparse image reconstruction.

Min J, Holden SJ, Carlini L, Unser M, Manley S, Ye JC.

Biomed Opt Express. 2014 Oct 14;5(11):3935-48. doi: 10.1364/BOE.5.003935. eCollection 2014 Nov 1.

36.

Isotropic inverse-problem approach for two-dimensional phase unwrapping.

Kamilov US, Papadopoulos IN, Shoreh MH, Psaltis D, Unser M.

J Opt Soc Am A Opt Image Sci Vis. 2015 Jun 1;32(6):1092-100. doi: 10.1364/JOSAA.32.001092.

PMID:
26367043
37.

Efficient Shape Priors for Spline-Based Snakes.

Delgado-Gonzalo R, Schmitter D, Uhlmann V, Unser M.

IEEE Trans Image Process. 2015 Nov;24(11):3915-26. doi: 10.1109/TIP.2015.2457335.

PMID:
26353353
38.

Optimized Kaiser-Bessel Window Functions for Computed Tomography.

Nilchian M, Ward JP, Vonesch C, Unser M.

IEEE Trans Image Process. 2015 Nov;24(11):3826-33. doi: 10.1109/TIP.2015.2451955. Epub 2015 Jul 1.

PMID:
26151939
39.

Quantitative evaluation of software packages for single-molecule localization microscopy.

Sage D, Kirshner H, Pengo T, Stuurman N, Min J, Manley S, Unser M.

Nat Methods. 2015 Aug;12(8):717-24. doi: 10.1038/nmeth.3442. Epub 2015 Jun 15.

PMID:
26076424
40.

Template-free wavelet-based detection of local symmetries.

Puspoki Z, Unser M.

IEEE Trans Image Process. 2015 Oct;24(10):3009-18. doi: 10.1109/TIP.2015.2436343. Epub 2015 May 21.

PMID:
26011883
41.

Spline based iterative phase retrieval algorithm for X-ray differential phase contrast radiography.

Nilchian M, Wang Z, Thuering T, Unser M, Stampanoni M.

Opt Express. 2015 Apr 20;23(8):10631-42. doi: 10.1364/OE.23.010631.

42.

Stressed mycobacteria use the chaperone ClpB to sequester irreversibly oxidized proteins asymmetrically within and between cells.

Vaubourgeix J, Lin G, Dhar N, Chenouard N, Jiang X, Botella H, Lupoli T, Mariani O, Yang G, Ouerfelli O, Unser M, Schnappinger D, McKinney J, Nathan C.

Cell Host Microbe. 2015 Feb 11;17(2):178-90. doi: 10.1016/j.chom.2014.12.008. Epub 2015 Jan 22.

43.

Analysis of S. pombe SIN protein association to the SPB reveals two genetically separable states of the SIN.

Wachowicz P, Chasapi A, Krapp A, Cano Del Rosario E, Schmitter D, Sage D, Unser M, Xenarios I, Rougemont J, Simanis V.

J Cell Sci. 2015 Feb 15;128(4):741-54. doi: 10.1242/jcs.160150. Epub 2014 Dec 12.

44.

Wavelets: on the virtues and applications of the mathematical microscope.

Unser M.

J Microsc. 2014 Sep;255(3):123-7. doi: 10.1111/jmi.12151. Epub 2014 Jul 12. Review.

45.

FALCON: fast and unbiased reconstruction of high-density super-resolution microscopy data.

Min J, Vonesch C, Kirshner H, Carlini L, Olivier N, Holden S, Manley S, Ye JC, Unser M.

Sci Rep. 2014 Apr 3;4:4577. doi: 10.1038/srep04577.

46.

Constrained regularized reconstruction of X-ray-DPCI tomograms with weighted-norm.

Nilchian M, Vonesch C, Lefkimmiatis S, Modregger P, Stampanoni M, Unser M.

Opt Express. 2013 Dec 30;21(26):32340-8. doi: 10.1364/OE.21.032340.

PMID:
24514826
47.

Adaptive image resizing based on continuous-domain stochastic modeling.

Kirshner H, Bourquard A, Ward JP, Porat M, Unser M.

IEEE Trans Image Process. 2014 Jan;23(1):413-23.

PMID:
24235249
48.

A chemostat array enables the spatio-temporal analysis of the yeast proteome.

Dénervaud N, Becker J, Delgado-Gonzalo R, Damay P, Rajkumar AS, Unser M, Shore D, Naef F, Maerkl SJ.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15842-7. doi: 10.1073/pnas.1308265110. Epub 2013 Sep 9.

49.

Multiple contrast metrics from the measurements of a digital confocal microscope.

Goy AS, Unser M, Psaltis D.

Biomed Opt Express. 2013 Jun 12;4(7):1091-103. doi: 10.1364/BOE.4.001091. Print 2013 Jul 1.

50.

Poisson image reconstruction with Hessian Schatten-norm regularization.

Lefkimmiatis S, Unser M.

IEEE Trans Image Process. 2013 Nov;22(11):4314-27. doi: 10.1109/TIP.2013.2271852. Epub 2013 Jul 3.

PMID:
23846472

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