Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 48

1.

Coulomb explosion imaging of CH3I and CH2ClI photodissociation dynamics.

Allum F, Burt M, Amini K, Boll R, Köckert H, Olshin PK, Bari S, Bomme C, Brauße F, Cunha de Miranda B, Düsterer S, Erk B, Géléoc M, Geneaux R, Gentleman AS, Goldsztejn G, Guillemin R, Holland DMP, Ismail I, Johnsson P, Journel L, Küpper J, Lahl J, Lee JWL, Maclot S, Mackenzie SR, Manschwetus B, Mereshchenko AS, Mason R, Palaudoux J, Piancastelli MN, Penent F, Rompotis D, Rouzée A, Ruchon T, Rudenko A, Savelyev E, Simon M, Schirmel N, Stapelfeldt H, Techert S, Travnikova O, Trippel S, Underwood JG, Vallance C, Wiese J, Ziaee F, Brouard M, Marchenko T, Rolles D.

J Chem Phys. 2018 Nov 28;149(20):204313. doi: 10.1063/1.5041381.

PMID:
30501230
2.

In This Issue, Volume 13, Issue 11.

Underwood JG.

ACS Chem Biol. 2018 Nov 16;13(11):3042. doi: 10.1021/acschembio.8b00980. No abstract available.

PMID:
30441910
3.

In This Issue, Volume 13, Issue 10.

Underwood JG.

ACS Chem Biol. 2018 Oct 19;13(10):2824. doi: 10.1021/acschembio.8b00897. No abstract available.

PMID:
30336671
4.

Photoionization of the iodine 3d, 4s, and 4p orbitals in methyl iodide.

Forbes R, De Fanis A, Bomme C, Rolles D, Pratt ST, Powis I, Besley NA, Simon M, Nandi S, Milosavljević AR, Nicolas C, Bozek JD, Underwood JG, Holland DMP.

J Chem Phys. 2018 Oct 14;149(14):144302. doi: 10.1063/1.5035496.

PMID:
30316287
5.

Landscape genetics identifies streams and drainage infrastructure as dispersal corridors for an endangered wetland bird.

van Rees CB, Reed JM, Wilson RE, Underwood JG, Sonsthagen SA.

Ecol Evol. 2018 Jul 24;8(16):8328-8343. doi: 10.1002/ece3.4296. eCollection 2018 Aug.

6.

In This Issue, Volume 13, Issue 9.

Underwood JG.

ACS Chem Biol. 2018 Sep 21;13(9):2359. doi: 10.1021/acschembio.8b00836. No abstract available.

PMID:
30235931
7.

Transcriptional fates of human-specific segmental duplications in brain.

Dougherty ML, Underwood JG, Nelson BJ, Tseng E, Munson KM, Penn O, Nowakowski TJ, Pollen AA, Eichler EE.

Genome Res. 2018 Oct;28(10):1566-1576. doi: 10.1101/gr.237610.118. Epub 2018 Sep 18.

PMID:
30228200
8.

Auger electron angular distributions following excitation or ionization of the I 3d level in methyl iodide.

Forbes R, De Fanis A, Bomme C, Rolles D, Pratt ST, Powis I, Besley NA, Nandi S, Milosavljević AR, Nicolas C, Bozek JD, Underwood JG, Holland DMP.

J Chem Phys. 2018 Sep 7;149(9):094304. doi: 10.1063/1.5045640.

PMID:
30195315
9.

In This Issue, Volume 13, Issue 7.

Underwood JG.

ACS Chem Biol. 2018 Jul 20;13(7):1699. doi: 10.1021/acschembio.8b00612. No abstract available.

PMID:
30025461
10.

Genomic characterization of the RH locus detects complex and novel structural variation in multi-ethnic cohorts.

Wheeler MM, Lannert KW, Huston H, Fletcher SN, Harris S, Teramura G, Maki HJ, Frazar C, Underwood JG, Shaffer T, Correa A, Delaney M, Reiner AP, Wilson JG, Nickerson DA, Johnsen JM; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium.

Genet Med. 2018 Jun 29. doi: 10.1038/s41436-018-0074-9. [Epub ahead of print]

11.

Comparative Annotation Toolkit (CAT)-simultaneous clade and personal genome annotation.

Fiddes IT, Armstrong J, Diekhans M, Nachtweide S, Kronenberg ZN, Underwood JG, Gordon D, Earl D, Keane T, Eichler EE, Haussler D, Stanke M, Paten B.

Genome Res. 2018 Jul;28(7):1029-1038. doi: 10.1101/gr.233460.117. Epub 2018 Jun 8.

12.

High-resolution comparative analysis of great ape genomes.

Kronenberg ZN, Fiddes IT, Gordon D, Murali S, Cantsilieris S, Meyerson OS, Underwood JG, Nelson BJ, Chaisson MJP, Dougherty ML, Munson KM, Hastie AR, Diekhans M, Hormozdiari F, Lorusso N, Hoekzema K, Qiu R, Clark K, Raja A, Welch AE, Sorensen M, Baker C, Fulton RS, Armstrong J, Graves-Lindsay TA, Denli AM, Hoppe ER, Hsieh P, Hill CM, Pang AWC, Lee J, Lam ET, Dutcher SK, Gage FH, Warren WC, Shendure J, Haussler D, Schneider VA, Cao H, Ventura M, Wilson RK, Paten B, Pollen A, Eichler EE.

Science. 2018 Jun 8;360(6393). pii: eaar6343. doi: 10.1126/science.aar6343.

13.

In This Issue, Volume 13, Issue 4.

Underwood JG.

ACS Chem Biol. 2018 Apr 20;13(4):841. doi: 10.1021/acschembio.8b00310. No abstract available.

PMID:
29673251
14.

In This Issue, Volume 13, Issue 3.

Underwood JG.

ACS Chem Biol. 2018 Mar 16;13(3):495. doi: 10.1021/acschembio.8b00207. No abstract available.

PMID:
29544256
15.

Genetic implications of bottleneck effects of differing severities on genetic diversity in naturally recovering populations: An example from Hawaiian coot and Hawaiian gallinule.

Sonsthagen SA, Wilson RE, Underwood JG.

Ecol Evol. 2017 Oct 20;7(23):9925-9934. doi: 10.1002/ece3.3530. eCollection 2017 Dec.

16.

Excited state wavepacket dynamics in NO2 probed by strong-field ionization.

Forbes R, Boguslavskiy AE, Wilkinson I, Underwood JG, Stolow A.

J Chem Phys. 2017 Aug 7;147(5):054305. doi: 10.1063/1.4996461.

PMID:
28789534
17.

Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains.

Draper JL, Hansen LM, Bernick DL, Abedrabbo S, Underwood JG, Kong N, Huang BC, Weis AM, Weimer BC, van Vliet AH, Pourmand N, Solnick JV, Karplus K, Ottemann KM.

MBio. 2017 Feb 21;8(1). pii: e02321-16. doi: 10.1128/mBio.02321-16.

18.

Massively parallel digital transcriptional profiling of single cells.

Zheng GX, Terry JM, Belgrader P, Ryvkin P, Bent ZW, Wilson R, Ziraldo SB, Wheeler TD, McDermott GP, Zhu J, Gregory MT, Shuga J, Montesclaros L, Underwood JG, Masquelier DA, Nishimura SY, Schnall-Levin M, Wyatt PW, Hindson CM, Bharadwaj R, Wong A, Ness KD, Beppu LW, Deeg HJ, McFarland C, Loeb KR, Valente WJ, Ericson NG, Stevens EA, Radich JP, Mikkelsen TS, Hindson BJ, Bielas JH.

Nat Commun. 2017 Jan 16;8:14049. doi: 10.1038/ncomms14049.

19.

High-Throughput Nuclease Probing of RNA Structures Using FragSeq.

Uzilov AV, Underwood JG.

Methods Mol Biol. 2016;1490:105-34. doi: 10.1007/978-1-4939-6433-8_8.

PMID:
27665596
20.

Velocity map imaging with non-uniform detection: Quantitative molecular axis alignment measurements via Coulomb explosion imaging.

Underwood JG, Procino I, Christiansen L, Maurer J, Stapelfeldt H.

Rev Sci Instrum. 2015 Jul;86(7):073101. doi: 10.1063/1.4922137.

PMID:
26233350
21.

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.

Weirather JL, Afshar PT, Clark TA, Tseng E, Powers LS, Underwood JG, Zabner J, Korlach J, Wong WH, Au KF.

Nucleic Acids Res. 2015 Oct 15;43(18):e116. doi: 10.1093/nar/gkv562. Epub 2015 Jun 3.

22.

Formation of coherent rotational wavepackets in small molecule-helium clusters using impulsive alignment.

Galinis G, Mendoza Luna LG, Watkins MJ, Ellis AM, Minns RS, Mladenović M, Lewerenz M, Chapman RT, Turcu IC, Cacho C, Springate E, Kazak L, Göde S, Irsig R, Skruszewicz S, Tiggesbäumker J, Meiwes-Broer KH, Rouzée A, Underwood JG, Siano M, von Haeften K.

Faraday Discuss. 2014;171:195-218. doi: 10.1039/c4fd00099d. Epub 2014 Aug 4.

PMID:
25415646
23.

Genetic variation in the HLA region is associated with susceptibility to herpes zoster.

Crosslin DR, Carrell DS, Burt A, Kim DS, Underwood JG, Hanna DS, Comstock BA, Baldwin E, de Andrade M, Kullo IJ, Tromp G, Kuivaniemi H, Borthwick KM, McCarty CA, Peissig PL, Doheny KF, Pugh E, Kho A, Pacheco J, Hayes MG, Ritchie MD, Verma SS, Armstrong G, Stallings S, Denny JC, Carroll RJ, Crawford DC, Crane PK, Mukherjee S, Bottinger E, Li R, Keating B, Mirel DB, Carlson CS, Harley JB, Larson EB, Jarvik GP.

Genes Immun. 2015 Jan-Feb;16(1):1-7. doi: 10.1038/gene.2014.51. Epub 2014 Oct 9.

24.

Multi-platform assessment of transcriptome profiling using RNA-seq in the ABRF next-generation sequencing study.

Li S, Tighe SW, Nicolet CM, Grove D, Levy S, Farmerie W, Viale A, Wright C, Schweitzer PA, Gao Y, Kim D, Boland J, Hicks B, Kim R, Chhangawala S, Jafari N, Raghavachari N, Gandara J, Garcia-Reyero N, Hendrickson C, Roberson D, Rosenfeld J, Smith T, Underwood JG, Wang M, Zumbo P, Baldwin DA, Grills GS, Mason CE.

Nat Biotechnol. 2014 Sep;32(9):915-925. doi: 10.1038/nbt.2972. Epub 2014 Aug 24. Erratum in: Nat Biotechnol. 2014 Nov;32(11):1166. Rosenfeld, Jeffrey [corrected to Rosenfeld, Jeffrey A].

25.

Long-read sequencing of chicken transcripts and identification of new transcript isoforms.

Thomas S, Underwood JG, Tseng E, Holloway AK; Bench To Basinet CvDC Informatics Subcommittee.

PLoS One. 2014 Apr 15;9(4):e94650. doi: 10.1371/journal.pone.0094650. eCollection 2014.

26.

Characterization of the human ESC transcriptome by hybrid sequencing.

Au KF, Sebastiano V, Afshar PT, Durruthy JD, Lee L, Williams BA, van Bakel H, Schadt EE, Reijo-Pera RA, Underwood JG, Wong WH.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):E4821-30. doi: 10.1073/pnas.1320101110. Epub 2013 Nov 26.

27.

Managing conservation reliant species: Hawai'i's endangered endemic waterbirds.

Underwood JG, Silbernagle M, Nishimoto M, Uyehara K.

PLoS One. 2013 Jun 25;8(6):e67872. doi: 10.1371/journal.pone.0067872. Print 2013.

28.

Improving PacBio long read accuracy by short read alignment.

Au KF, Underwood JG, Lee L, Wong WH.

PLoS One. 2012;7(10):e46679. doi: 10.1371/journal.pone.0046679. Epub 2012 Oct 4.

29.

Transient X-ray fragmentation: probing a prototypical photoinduced ring opening.

Petrović VS, Siano M, White JL, Berrah N, Bostedt C, Bozek JD, Broege D, Chalfin M, Coffee RN, Cryan J, Fang L, Farrell JP, Frasinski LJ, Glownia JM, Gühr M, Hoener M, Holland DM, Kim J, Marangos JP, Martinez T, McFarland BK, Minns RS, Miyabe S, Schorb S, Sension RJ, Spector LS, Squibb R, Tao H, Underwood JG, Bucksbaum PH.

Phys Rev Lett. 2012 Jun 22;108(25):253006. Epub 2012 Jun 21.

30.

Gene isoform specificity through enhancer-associated antisense transcription.

Onodera CS, Underwood JG, Katzman S, Jacobs F, Greenberg D, Salama SR, Haussler D.

PLoS One. 2012;7(8):e43511. doi: 10.1371/journal.pone.0043511. Epub 2012 Aug 24.

31.

Enhancement of high harmonics generated by field steering of electrons in a two-color orthogonally polarized laser field.

Brugnera L, Frank F, Hoffmann DJ, Torres R, Siegel T, Underwood JG, Springate E, Froud C, Turcu EI, Tisch JW, Marangos JP.

Opt Lett. 2010 Dec 1;35(23):3994-6. doi: 10.1364/OL.35.003994.

PMID:
21124590
32.

Combining landscape-level conservation planning and biodiversity offset programs: a case study.

Underwood JG.

Environ Manage. 2011 Jan;47(1):121-9. doi: 10.1007/s00267-010-9589-9. Epub 2010 Nov 28.

PMID:
21113781
33.

FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing.

Underwood JG, Uzilov AV, Katzman S, Onodera CS, Mainzer JE, Mathews DH, Lowe TM, Salama SR, Haussler D.

Nat Methods. 2010 Dec;7(12):995-1001. doi: 10.1038/nmeth.1529. Epub 2010 Nov 7.

34.

High harmonic emission from a superposition of multiple unrelated frequency fields.

Siegel T, Torres R, Hoffmann DJ, Brugnera L, Procino I, Zaïr A, Underwood JG, Springate E, Turcu IC, Chipperfield LE, Marangos JP.

Opt Express. 2010 Mar 29;18(7):6853-62. doi: 10.1364/OE.18.006853.

PMID:
20389704
35.

Extension of high harmonic spectroscopy in molecules by a 1300 nm laser field.

Torres R, Siegel T, Brugnera L, Procino I, Underwood JG, Altucci C, Velotta R, Springate E, Froud C, Turcu IC, Ivanov MY, Smirnova O, Marangos JP.

Opt Express. 2010 Feb 1;18(3):3174-80. doi: 10.1364/OE.18.003174.

PMID:
20174156
36.

Identifying conservation areas on the basis of alternative distribution data sets.

Underwood JG, D'Agrosa C, Gerber LR.

Conserv Biol. 2010 Feb;24(1):162-70. doi: 10.1111/j.1523-1739.2009.01303.x. Epub 2009 Jul 29.

PMID:
19659686
37.

Estimating sustainable bycatch rates for California sea lion populations in the Gulf of California.

Underwood JG, Hernandez Camacho CJ, Aurioles-Gamboa D, Gerber LR.

Conserv Biol. 2008 Jun;22(3):701-10. doi: 10.1111/j.1523-1739.2008.00919.x. Epub 2008 Apr 10.

PMID:
18410402
38.

Probing orbital structure of polyatomic molecules by high-order harmonic generation.

Torres R, Kajumba N, Underwood JG, Robinson JS, Baker S, Tisch JW, de Nalda R, Bryan WA, Velotta R, Altucci C, Turcu IC, Marangos JP.

Phys Rev Lett. 2007 May 18;98(20):203007. Epub 2007 May 17. Erratum in: Phys Rev Lett. 2007 Jun 8;98(23):239903.

PMID:
17677693
39.

Field-free three-dimensional alignment of polyatomic molecules.

Lee KF, Villeneuve DM, Corkum PB, Stolow A, Underwood JG.

Phys Rev Lett. 2006 Oct 27;97(17):173001. Epub 2006 Oct 26.

PMID:
17155469
40.

Molecular basis of RNA recognition by the human alternative splicing factor Fox-1.

Auweter SD, Fasan R, Reymond L, Underwood JG, Black DL, Pitsch S, Allain FH.

EMBO J. 2006 Jan 11;25(1):163-73. Epub 2005 Dec 15.

41.

Femtosecond multidimensional imaging of a molecular dissociation.

Gessner O, Lee AM, Shaffer JP, Reisler H, Levchenko SV, Krylov AI, Underwood JG, Shi H, East AL, Wardlaw DM, Chrysostom ET, Hayden CC, Stolow A.

Science. 2006 Jan 13;311(5758):219-22. Epub 2005 Dec 15.

42.

Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals.

Underwood JG, Boutz PL, Dougherty JD, Stoilov P, Black DL.

Mol Cell Biol. 2005 Nov;25(22):10005-16.

43.

Field-free three dimensional molecular axis alignment.

Underwood JG, Sussman BJ, Stolow A.

Phys Rev Lett. 2005 Apr 15;94(14):143002. Epub 2005 Apr 13.

PMID:
15904061
45.

Switched wave packets: a route to nonperturbative quantum control.

Underwood JG, Spanner M, Ivanov MY, Mottershead J, Sussman BJ, Stolow A.

Phys Rev Lett. 2003 Jun 6;90(22):223001. Epub 2003 Jun 4.

PMID:
12857311
46.
47.

Nitrosamines in cigarette smoke condensate.

McCormick A, Nicholson MJ, Baylis MA, Underwood JG.

Nature. 1973 Jul 27;244(5413):237-8. No abstract available.

PMID:
4583100
48.

Constitution of the dibenzofuran, psi-rhodomyrtoxin, isolated from Rhodomyrtus macrocarpa Benth.

Anderson NH, Ollis WD, Underwood JG, Scrowston RM.

J Chem Soc Perkin 1. 1969;18:2403-8. No abstract available.

PMID:
5391289

Supplemental Content

Loading ...
Support Center