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Items: 9

1.

TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration.

Lagström S, Umu SU, Lepistö M, Ellonen P, Meisal R, Christiansen IK, Ambur OH, Rounge TB.

Sci Rep. 2019 Jan 24;9(1):524. doi: 10.1038/s41598-018-36669-6.

2.

Circulating small non-coding RNAs associated with age, sex, smoking, body mass and physical activity.

Rounge TB, Umu SU, Keller A, Meese E, Ursin G, Tretli S, Lyle R, Langseth H.

Sci Rep. 2018 Dec 5;8(1):17650. doi: 10.1038/s41598-018-35974-4.

3.

A high-resolution map of the human small non-coding transcriptome.

Fehlmann T, Backes C, Alles J, Fischer U, Hart M, Kern F, Langseth H, Rounge T, Umu SU, Kahraman M, Laufer T, Haas J, Staehler C, Ludwig N, Hübenthal M, Meder B, Franke A, Lenhof HP, Meese E, Keller A.

Bioinformatics. 2018 May 15;34(10):1621-1628. doi: 10.1093/bioinformatics/btx814.

PMID:
29281000
4.

A comprehensive profile of circulating RNAs in human serum.

Umu SU, Langseth H, Bucher-Johannessen C, Fromm B, Keller A, Meese E, Lauritzen M, Leithaug M, Lyle R, Rounge TB.

RNA Biol. 2018 Feb 1;15(2):242-250. doi: 10.1080/15476286.2017.1403003. Epub 2017 Dec 8.

5.

A comprehensive benchmark of RNA-RNA interaction prediction tools for all domains of life.

Umu SU, Gardner PP.

Bioinformatics. 2017 Apr 1;33(7):988-996. doi: 10.1093/bioinformatics/btw728.

6.

Avoidance of stochastic RNA interactions can be harnessed to control protein expression levels in bacteria and archaea.

Umu SU, Poole AM, Dobson RC, Gardner PP.

Elife. 2016 Sep 20;5. pii: e13479. doi: 10.7554/eLife.13479.

7.

Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling.

Lindgreen S, Umu SU, Lai AS, Eldai H, Liu W, McGimpsey S, Wheeler NE, Biggs PJ, Thomson NR, Barquist L, Poole AM, Gardner PP.

PLoS Comput Biol. 2014 Oct 30;10(10):e1003907. doi: 10.1371/journal.pcbi.1003907. eCollection 2014 Oct.

8.

TRAINER: a general-purpose trainable short biosequence classifer.

Ogul H, Kalkan AT, Umu SU, Akkaya MS.

Protein Pept Lett. 2013 Oct;20(10):1108-14.

PMID:
23544665
9.

A probabilistic approach to microRNA-target binding.

Oğul H, Umu SU, Tuncel YY, Akkaya MS.

Biochem Biophys Res Commun. 2011 Sep 16;413(1):111-5. doi: 10.1016/j.bbrc.2011.08.065. Epub 2011 Aug 22.

PMID:
21875575

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