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Items: 34

1.

Pyrimidine motif triple helix in the Kluyveromyces lactis telomerase RNA pseudoknot is essential for function in vivo.

Cash DD, Cohen-Zontag O, Kim NK, Shefer K, Brown Y, Ulyanov NB, Tzfati Y, Feigon J.

Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):10970-5. doi: 10.1073/pnas.1309590110. Epub 2013 Jun 17.

2.
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Binding characteristics of small molecules that mimic nucleocapsid protein-induced maturation of stem-loop 1 of HIV-1 RNA.

Chung J, Ulyanov NB, Guilbert C, Mujeeb A, James TL.

Biochemistry. 2010 Aug 3;49(30):6341-51. doi: 10.1021/bi100660r.

4.
5.

Discovery of ligands for a novel target, the human telomerase RNA, based on flexible-target virtual screening and NMR.

Pinto IG, Guilbert C, Ulyanov NB, Stearns J, James TL.

J Med Chem. 2008 Nov 27;51(22):7205-15. doi: 10.1021/jm800825n.

6.

Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates.

Ulyanov NB, Shefer K, James TL, Tzfati Y.

Nucleic Acids Res. 2007;35(18):6150-60. Epub 2007 Sep 7.

7.

Nucleocapsid protein-mediated maturation of dimer initiation complex of full-length SL1 stemloop of HIV-1: sequence effects and mechanism of RNA refolding.

Mujeeb A, Ulyanov NB, Georgantis S, Smirnov I, Chung J, Parslow TG, James TL.

Nucleic Acids Res. 2007;35(6):2026-34. Epub 2007 Mar 6.

8.

A triple helix within a pseudoknot is a conserved and essential element of telomerase RNA.

Shefer K, Brown Y, Gorkovoy V, Nussbaum T, Ulyanov NB, Tzfati Y.

Mol Cell Biol. 2007 Mar;27(6):2130-43. Epub 2007 Jan 8.

9.

NMR structure of the full-length linear dimer of stem-loop-1 RNA in the HIV-1 dimer initiation site.

Ulyanov NB, Mujeeb A, Du Z, Tonelli M, Parslow TG, James TL.

J Biol Chem. 2006 Jun 9;281(23):16168-77. Epub 2006 Apr 6.

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Dynamic NMR structures of [Rp]- and [Sp]-phosphorothioated DNA-RNA hybrids: is flexibility required for RNase H recognition?

Tonelli M, Ulyanov NB, Billeci TM, Karwowski B, Guga P, Stec WJ, James TL.

Biophys J. 2003 Oct;85(4):2525-38.

13.

NMR structure of the 3' stem-loop from human U4 snRNA.

Comolli LR, Ulyanov NB, Soto AM, Marky LA, James TL, Gmeiner WH.

Nucleic Acids Res. 2002 Oct 15;30(20):4371-9.

14.

High-resolution NMR structure of an AT-rich DNA sequence.

Ulyanov NB, Bauer WR, James TL.

J Biomol NMR. 2002 Mar;22(3):265-80.

PMID:
11991355
15.

Slow motion in the CAA*TTG sequence of a DNA decamer duplex studied by NMR.

Kojima C, Ulyanov NB, Kainosho M, James TL.

Biochemistry. 2001 Jun 19;40(24):7239-46.

PMID:
11401571
16.
18.

Solution structure of Syrian hamster prion protein rPrP(90-231).

Liu H, Farr-Jones S, Ulyanov NB, Llinas M, Marqusee S, Groth D, Cohen FE, Prusiner SB, James TL.

Biochemistry. 1999 Apr 27;38(17):5362-77.

PMID:
10220323
19.

A pseudoknot-compatible universal site is located in the large ribosomal RNA in the peptidyltransferase center.

Ivanov VI, Bondarenko SA, Zdobnov EM, Beniaminov AD, Minyat EE, Ulyanov NB.

FEBS Lett. 1999 Mar 5;446(1):60-4.

20.
21.

A pseudosquare knot structure of DNA in solution.

Ulyanov NB, Ivanov VI, Minyat EE, Khomyakova EB, Petrova MV, Lesiak K, James TL.

Biochemistry. 1998 Sep 15;37(37):12715-26.

PMID:
9737848
22.

Solution structure of a 142-residue recombinant prion protein corresponding to the infectious fragment of the scrapie isoform.

James TL, Liu H, Ulyanov NB, Farr-Jones S, Zhang H, Donne DG, Kaneko K, Groth D, Mehlhorn I, Prusiner SB, Cohen FE.

Proc Natl Acad Sci U S A. 1997 Sep 16;94(19):10086-91.

23.

Interproton distance bounds from 2D NOE intensities: effect of experimental noise and peak integration errors.

Liu H, Spielmann HP, Ulyanov NB, Wemmer DE, James TL.

J Biomol NMR. 1995 Dec;6(4):390-402.

PMID:
8563467
24.

Statistical analysis of DNA duplex structural features.

Ulyanov NB, James TL.

Methods Enzymol. 1995;261:90-120. No abstract available.

PMID:
8569515
25.

Probability assessment of conformational ensembles: sugar repuckering in a DNA duplex in solution.

Ulyanov NB, Schmitz U, Kumar A, James TL.

Biophys J. 1995 Jan;68(1):13-24.

26.

Tertiary base pair interactions in slipped loop-DNA: an NMR and model building study.

Ulyanov NB, Bishop KD, Ivanov VI, James TL.

Nucleic Acids Res. 1994 Oct 11;22(20):4242-9.

27.

A parallel DNA triplex as a model for the intermediate in homologous recombination.

Zhurkin VB, Raghunathan G, Ulyanov NB, Camerini-Otero RD, Jernigan RL.

J Mol Biol. 1994 Jun 3;239(2):181-200.

PMID:
8196053
28.
32.

Static and statistical bending of DNA evaluated by Monte Carlo simulations.

Zhurkin VB, Ulyanov NB, Gorin AA, Jernigan RL.

Proc Natl Acad Sci U S A. 1991 Aug 15;88(16):7046-50.

33.

Human c-myc gene contains a regulatory site similar to consensus of interferon response sequence (IRS).

Alexandrova NM, Itkes AV, Imamova LR, Chernov BK, Tulchinsky EM, Ulyanov NB, Kisselev LL.

FEBS Lett. 1990 Jun 4;265(1-2):67-70.

34.

Sequence-dependent anisotropic flexibility of B-DNA. A conformational study.

Ulyanov NB, Zhurkin VB.

J Biomol Struct Dyn. 1984 Oct;2(2):361-85.

PMID:
6400941

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