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Items: 30

1.

Distinctive Archaeal Composition of an Artisanal Crystallizer Pond and Functional Insights Into Salt-Saturated Hypersaline Environment Adaptation.

Plominsky AM, Henríquez-Castillo C, Delherbe N, Podell S, Ramirez-Flandes S, Ugalde JA, Santibañez JF, van den Engh G, Hanselmann K, Ulloa O, De la Iglesia R, Allen EE, Trefault N.

Front Microbiol. 2018 Aug 14;9:1800. doi: 10.3389/fmicb.2018.01800. eCollection 2018.

2.

Microbial biotransformations in the human distal gut.

Bik EM, Ugalde JA, Cousins J, Goddard AD, Richman J, Apte ZS.

Br J Pharmacol. 2017 Nov 8. doi: 10.1111/bph.14085. [Epub ahead of print] Review.

3.

Microbial Disruption Indices to Detect Colonization With Multidrug-Resistant Organisms.

Araos R, Montgomery V, Ugalde JA, Snyder GM, D'Agata EMC.

Infect Control Hosp Epidemiol. 2017 Nov;38(11):1312-1318. doi: 10.1017/ice.2017.190. Epub 2017 Sep 13.

PMID:
28899445
4.

The Gut Microbiota of Healthy Chilean Subjects Reveals a High Abundance of the Phylum Verrucomicrobia.

Fujio-Vejar S, Vasquez Y, Morales P, Magne F, Vera-Wolf P, Ugalde JA, Navarrete P, Gotteland M.

Front Microbiol. 2017 Jun 30;8:1221. doi: 10.3389/fmicb.2017.01221. eCollection 2017.

5.

Phylogenomic Insight into Salinispora (Bacteria, Actinobacteria) Species Designations.

Millán-Aguiñaga N, Chavarria KL, Ugalde JA, Letzel AC, Rouse GW, Jensen PR.

Sci Rep. 2017 Jun 15;7(1):3564. doi: 10.1038/s41598-017-02845-3.

6.
7.

Genome Sequence of Streptomyces sp. H-KF8, a Marine Actinobacterium Isolated from a Northern Chilean Patagonian Fjord.

Undabarrena A, Ugalde JA, Castro-Nallar E, Seeger M, Cámara B.

Genome Announc. 2017 Feb 9;5(6). pii: e01645-16. doi: 10.1128/genomeA.01645-16.

8.

A novel gene cluster allows preferential utilization of fucosylated milk oligosaccharides in Bifidobacterium longum subsp. longum SC596.

Garrido D, Ruiz-Moyano S, Kirmiz N, Davis JC, Totten SM, Lemay DG, Ugalde JA, German JB, Lebrilla CB, Mills DA.

Sci Rep. 2016 Oct 19;6:35045. doi: 10.1038/srep35045.

9.

Comparative transcriptome assembly and genome-guided profiling for Brettanomyces bruxellensis LAMAP2480 during p-coumaric acid stress.

Godoy L, Vera-Wolf P, Martinez C, Ugalde JA, Ganga MA.

Sci Rep. 2016 Sep 28;6:34304. doi: 10.1038/srep34304.

10.

Genome sequencing and analysis of the first complete genome of Lactobacillus kunkeei strain MP2, an Apis mellifera gut isolate.

Asenjo F, Olmos A, Henríquez-Piskulich P, Polanco V, Aldea P, Ugalde JA, Trombert AN.

PeerJ. 2016 Apr 19;4:e1950. doi: 10.7717/peerj.1950. eCollection 2016.

11.

Impact of Dietary Lipids on Colonic Function and Microbiota: An Experimental Approach Involving Orlistat-Induced Fat Malabsorption in Human Volunteers.

Morales P, Fujio S, Navarrete P, Ugalde JA, Magne F, Carrasco-Pozo C, Tralma K, Quezada M, Hurtado C, Covarrubias N, Brignardello J, Henriquez D, Gotteland M.

Clin Transl Gastroenterol. 2016 Apr 7;7:e161. doi: 10.1038/ctg.2016.20.

12.

Identification of Thiotetronic Acid Antibiotic Biosynthetic Pathways by Target-directed Genome Mining.

Tang X, Li J, Millán-Aguiñaga N, Zhang JJ, O'Neill EC, Ugalde JA, Jensen PR, Mantovani SM, Moore BS.

ACS Chem Biol. 2015 Dec 18;10(12):2841-2849. doi: 10.1021/acschembio.5b00658. Epub 2015 Oct 21.

13.

Genome Sequence of Vibrio VPAP30, Isolated from an Episode of Massive Mortality of Reared Larvae of the Scallop Argopecten purpuratus.

Rojas R, Miranda CD, Romero J, Asenjo F, Valderrama K, Segovia C, Ugalde JA, Santander J.

Genome Announc. 2015 Jul 9;3(4). pii: e00745-15. doi: 10.1128/genomeA.00745-15.

14.

Evolution of the indoor biome.

NESCent Working Group on the Evolutionary Biology of the Built Environment, Martin LJ, Adams RI, Bateman A, Bik HM, Hawks J, Hird SM, Hughes D, Kembel SW, Kinney K, Kolokotronis SO, Levy G, McClain C, Meadow JF, Medina RF, Mhuireach G, Moreau CS, Munshi-South J, Nichols LM, Palmer C, Popova L, Schal C, Täubel M, Trautwein M, Ugalde JA, Dunn RR.

Trends Ecol Evol. 2015 Apr;30(4):223-32. doi: 10.1016/j.tree.2015.02.001. Epub 2015 Mar 11. Review.

PMID:
25770744
15.

Metagenome sequencing of the microbial community of a solar saltern crystallizer pond at cáhuil lagoon, chile.

Plominsky AM, Delherbe N, Ugalde JA, Allen EE, Blanchet M, Ikeda P, Santibañez F, Hanselmann K, Ulloa O, De la Iglesia R, von Dassow P, Astorga M, Gálvez MJ, González ML, Henríquez-Castillo C, Vaulot D, Lopes do Santos A, van den Engh G, Gimpel C, Bertoglio F, Delgado Y, Docmac F, Elizondo-Patrone C, Narváez S, Sorroche F, Rojas-Herrera M, Trefault N.

Genome Announc. 2014 Nov 13;2(6). pii: e01172-14. doi: 10.1128/genomeA.01172-14.

16.

Draft Genome Sequence of Salmonella enterica Serovar Typhi Strain STH2370.

Valenzuela C, Ugalde JA, Mora GC, Alvarez S, Contreras I, Santiviago CA.

Genome Announc. 2014 Feb 20;2(1). pii: e00104-14. doi: 10.1128/genomeA.00104-14.

17.

Draft Genome Sequence of "Candidatus Halobonum tyrrellensis" Strain G22, Isolated from the Hypersaline Waters of Lake Tyrrell, Australia.

Ugalde JA, Narasingarao P, Kuo S, Podell S, Allen EE.

Genome Announc. 2013 Dec 12;1(6). pii: e01001-13. doi: 10.1128/genomeA.01001-13.

18.

Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community.

Podell S, Emerson JB, Jones CM, Ugalde JA, Welch S, Heidelberg KB, Banfield JF, Allen EE.

ISME J. 2014 May;8(5):979-90. doi: 10.1038/ismej.2013.221. Epub 2013 Dec 12.

19.

Microbial mechanisms coupling carbon and phosphorus cycles in phosphorus-limited northern Adriatic Sea.

Malfatti F, Turk V, Tinta T, Mozetič P, Manganelli M, Samo TJ, Ugalde JA, Kovač N, Stefanelli M, Antonioli M, Fonda-Umani S, Del Negro P, Cataletto B, Hozić A, Ivošević Denardis N, Zutić V, Svetličić V, Mišić Radić T, Radić T, Fuks D, Azam F.

Sci Total Environ. 2014 Feb 1;470-471:1173-83. doi: 10.1016/j.scitotenv.2013.10.040. Epub 2013 Nov 16.

PMID:
24246940
20.

Composite bacterial hopanoids and their microbial producers across oxygen gradients in the water column of the California Current.

Kharbush JJ, Ugalde JA, Hogle SL, Allen EE, Aluwihare LI.

Appl Environ Microbiol. 2013 Dec;79(23):7491-501. doi: 10.1128/AEM.02367-13. Epub 2013 Sep 27. Erratum in: Appl Environ Microbiol. 2014 May;80(10):3283.

21.

Microbial life in a fjord: metagenomic analysis of a microbial mat in Chilean patagonia.

Ugalde JA, Gallardo MJ, Belmar C, Muñoz P, Ruiz-Tagle N, Ferrada-Fuentes S, Espinoza C, Allen EE, Gallardo VA.

PLoS One. 2013 Aug 28;8(8):e71952. doi: 10.1371/journal.pone.0071952. eCollection 2013.

22.

Assembly-driven community genomics of a hypersaline microbial ecosystem.

Podell S, Ugalde JA, Narasingarao P, Banfield JF, Heidelberg KB, Allen EE.

PLoS One. 2013 Apr 18;8(4):e61692. doi: 10.1371/journal.pone.0061692. Print 2013.

23.

Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria.

Ugalde JA, Podell S, Narasingarao P, Allen EE.

Biol Direct. 2011 Oct 10;6:52. doi: 10.1186/1745-6150-6-52.

24.

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.

Narasingarao P, Podell S, Ugalde JA, Brochier-Armanet C, Emerson JB, Brocks JJ, Heidelberg KB, Banfield JF, Allen EE.

ISME J. 2012 Jan;6(1):81-93. doi: 10.1038/ismej.2011.78. Epub 2011 Jun 30.

25.

Comparative genomic analysis of carbon and nitrogen assimilation mechanisms in three indigenous bioleaching bacteria: predictions and validations.

Levicán G, Ugalde JA, Ehrenfeld N, Maass A, Parada P.

BMC Genomics. 2008 Dec 3;9:581. doi: 10.1186/1471-2164-9-581.

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28.

Evolution of coral pigments recreated.

Ugalde JA, Chang BS, Matz MV.

Science. 2004 Sep 3;305(5689):1433.

29.

GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity.

Shagin DA, Barsova EV, Yanushevich YG, Fradkov AF, Lukyanov KA, Labas YA, Semenova TN, Ugalde JA, Meyers A, Nunez JM, Widder EA, Lukyanov SA, Matz MV.

Mol Biol Evol. 2004 May;21(5):841-50. Epub 2004 Feb 12.

PMID:
14963095

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