PubMed

Rodionova IA, Goodacre N, Do J, Hosseinnia A, Babu M, Uetz P, Saier MH Jr.

J Biol Chem. 2018 Oct 5;293(40):15725-15732. doi: 10.1074/jbc.RA118.004425. Epub 2018 Aug 8.

Goodacre N, Devkota P, Bae E, Wuchty S, Uetz P.

Semin Cell Dev Biol. 2018 Jul 26. pii: S1084-9521(17)30499-8. doi: 10.1016/j.semcdb.2018.07.018. [Epub ahead of print] Review.

Mehla J, Caufield JH, Uetz P.

Methods Mol Biol. 2018;1794:17-28. doi: 10.1007/978-1-4939-7871-7_2.

Uetz P, Stylianou A.

Zootaxa. 2018 Jan 24;4375(2):257-264. doi: 10.11646/zootaxa.4375.2.5.

Wuchty S, Müller SA, Caufield JH, Häuser R, Aloy P, Kalkhof S, Uetz P.

Mol Cell Proteomics. 2018 May;17(5):961-973. doi: 10.1074/mcp.RA117.000474. Epub 2018 Feb 1.

Rodionova IA, Goodacre N, Babu M, Emili A, Uetz P, Saier MH Jr.

J Bacteriol. 2018 Feb 7;200(5). pii: e00691-17. doi: 10.1128/JB.00691-17. Print 2018 Mar 1.

Roll U, Feldman A, Novosolov M, Allison A, Bauer AM, Bernard R, Böhm M, Castro-Herrera F, Chirio L, Collen B, Colli GR, Dabool L, Das I, Doan TM, Grismer LL, Hoogmoed M, Itescu Y, Kraus F, LeBreton M, Lewin A, Martins M, Maza E, Meirte D, Nagy ZT, Nogueira CC, Pauwels OSG, Pincheira-Donoso D, Powney GD, Sindaco R, Tallowin O, Torres-Carvajal O, Trape JF, Vidan E, Uetz P, Wagner P, Wang Y, Orme CDL, Grenyer R, Meiri S.

Nat Ecol Evol. 2018 Jan;2(1):193. doi: 10.1038/s41559-017-0399-9. No abstract available.

Mehla J, Dedrick RM, Caufield JH, Wagemans J, Sakhawalkar N, Johnson A, Hatfull GF, Uetz P.

Sci Rep. 2017 Nov 28;7(1):16514. doi: 10.1038/s41598-017-16303-7.

Babu M, Bundalovic-Torma C, Calmettes C, Phanse S, Zhang Q, Jiang Y, Minic Z, Kim S, Mehla J, Gagarinova A, Rodionova I, Kumar A, Guo H, Kagan O, Pogoutse O, Aoki H, Deineko V, Caufield JH, Holtzapple E, Zhang Z, Vastermark A, Pandya Y, Lai CC, El Bakkouri M, Hooda Y, Shah M, Burnside D, Hooshyar M, Vlasblom J, Rajagopala SV, Golshani A, Wuchty S, F Greenblatt J, Saier M, Uetz P, F Moraes T, Parkinson J, Emili A.

Nat Biotechnol. 2018 Jan;36(1):103-112. doi: 10.1038/nbt.4024. Epub 2017 Nov 27.

Roll U, Feldman A, Novosolov M, Allison A, Bauer AM, Bernard R, Böhm M, Castro-Herrera F, Chirio L, Collen B, Colli GR, Dabool L, Das I, Doan TM, Grismer LL, Hoogmoed M, Itescu Y, Kraus F, LeBreton M, Lewin A, Martins M, Maza E, Meirte D, Nagy ZT, de C Nogueira C, Pauwels OSG, Pincheira-Donoso D, Powney GD, Sindaco R, Tallowin OJS, Torres-Carvajal O, Trape JF, Vidan E, Uetz P, Wagner P, Wang Y, Orme CDL, Grenyer R, Meiri S.

Nat Ecol Evol. 2017 Nov;1(11):1785. doi: 10.1038/s41559-017-0380-7.

Roll U, Feldman A, Novosolov M, Allison A, Bauer AM, Bernard R, Böhm M, Castro-Herrera F, Chirio L, Collen B, Colli GR, Dabool L, Das I, Doan TM, Grismer LL, Hoogmoed M, Itescu Y, Kraus F, LeBreton M, Lewin A, Martins M, Maza E, Meirte D, Nagy ZT, de C Nogueira C, Pauwels OSG, Pincheira-Donoso D, Powney GD, Sindaco R, Tallowin OJS, Torres-Carvajal O, Trape JF, Vidan E, Uetz P, Wagner P, Wang Y, Orme CDL, Grenyer R, Meiri S.

Nat Ecol Evol. 2017 Nov;1(11):1677-1682. doi: 10.1038/s41559-017-0332-2. Epub 2017 Oct 9. Erratum in: Nat Ecol Evol. 2017 Nov;1(11):1785. Nat Ecol Evol. 2017 Dec 5;:.

Berjón-Otero M, Lechuga A, Mehla J, Uetz P, Salas M, Redrejo-Rodríguez M.

J Virol. 2017 Sep 12;91(19). pii: e00870-17. doi: 10.1128/JVI.00870-17. Print 2017 Oct 1.

Wuchty S, Rajagopala SV, Blazie SM, Parrish JR, Khuri S, Finley RL Jr, Uetz P.

mSystems. 2017 Jun 6;2(3). pii: e00019-17. doi: 10.1128/mSystems.00019-17. eCollection 2017 May-Jun.

Rodionova IA, Zhang Z, Mehla J, Goodacre N, Babu M, Emili A, Uetz P, Saier MH Jr.

J Biol Chem. 2017 Aug 25;292(34):14250-14257. doi: 10.1074/jbc.M117.795294. Epub 2017 Jun 20.

Uetz P, Garg A.

Nature. 2017 May 24;545(7655):412. doi: 10.1038/545412c. No abstract available.

Caufield JH, Wimble C, Shary S, Wuchty S, Uetz P.

BMC Bioinformatics. 2017 Mar 16;18(1):171. doi: 10.1186/s12859-017-1585-0.

Mehla J, Caufield JH, Sakhawalkar N, Uetz P.

Methods Enzymol. 2017;586:333-358. doi: 10.1016/bs.mie.2016.10.020. Epub 2017 Jan 5.

Mariano R, Khuri S, Uetz P, Wuchty S.

mSystems. 2016 Mar 8;1(2). pii: e00030-15. eCollection 2016 Mar-Apr.

Mariano R, Wuchty S, Vizoso-Pinto MG, Häuser R, Uetz P.

Sci Rep. 2016 Apr 22;6:24597. doi: 10.1038/srep24597.

Goodacre N, Edwards N, Danielsen M, Uetz P, Wu C.

IEEE/ACM Trans Comput Biol Bioinform. 2017 Sep-Oct;14(5):1082-1093. doi: 10.1109/TCBB.2016.2520931. Epub 2016 Jan 22.

Osterman A, Stellberger T, Gebhardt A, Kurz M, Friedel CC, Uetz P, Nitschko H, Baiker A, Vizoso-Pinto MG.

Sci Rep. 2015 Oct 14;5:13872. doi: 10.1038/srep13872.

Mehla J, Dedrick RM, Caufield JH, Siefring R, Mair M, Johnson A, Hatfull GF, Uetz P.

J Bacteriol. 2015 Aug 1;197(15):2508-16. doi: 10.1128/JB.00164-15. Epub 2015 May 18.

Müller SA, Pernitzsch SR, Haange SB, Uetz P, von Bergen M, Sharma CM, Kalkhof S.

J Proteomics. 2015 Aug 3;126:34-45. doi: 10.1016/j.jprot.2015.05.011. Epub 2015 May 12.

Mehla J, Caufield JH, Uetz P.

Cold Spring Harb Protoc. 2015 May 1;2015(5):425-30. doi: 10.1101/pdb.top083345.

Mehla J, Caufield JH, Uetz P.

Cold Spring Harb Protoc. 2015 May 1;2015(5):442-52. doi: 10.1101/pdb.prot086157.

Caufield JH, Abreu M, Wimble C, Uetz P.

PLoS Comput Biol. 2015 Feb 27;11(2):e1004107. doi: 10.1371/journal.pcbi.1004107. eCollection 2015 Feb.

Blasche S, Arens S, Ceol A, Siszler G, Schmidt MA, Häuser R, Schwarz F, Wuchty S, Aloy P, Uetz P, Stradal T, Koegl M.

Sci Rep. 2014 Dec 18;4:7531. doi: 10.1038/srep07531.

Chibucos MC, Zweifel AE, Herrera JC, Meza W, Eslamfam S, Uetz P, Siegele DA, Hu JC, Giglio MG.

BMC Microbiol. 2014 Nov 30;14:294. doi: 10.1186/s12866-014-0294-3.

Wuchty S, Uetz P.

Sci Rep. 2014 Nov 28;4:7187. doi: 10.1038/srep07187.

Wagemans J, Blasdel BG, Van den Bossche A, Uytterhoeven B, De Smet J, Paeshuyse J, Cenens W, Aertsen A, Uetz P, Delattre AS, Ceyssens PJ, Lavigne R.

Cell Microbiol. 2014 Dec;16(12):1822-35. doi: 10.1111/cmi.12330. Epub 2014 Aug 26.

Häuser R, Ceol A, Rajagopala SV, Mosca R, Siszler G, Wermke N, Sikorski P, Schwarz F, Schick M, Wuchty S, Aloy P, Uetz P.

Mol Cell Proteomics. 2014 May;13(5):1318-29. doi: 10.1074/mcp.O113.033571. Epub 2014 Mar 13.

Rajagopala SV, Sikorski P, Kumar A, Mosca R, Vlasblom J, Arnold R, Franca-Koh J, Pakala SB, Phanse S, Ceol A, Häuser R, Siszler G, Wuchty S, Emili A, Babu M, Aloy P, Pieper R, Uetz P.

Nat Biotechnol. 2014 Mar;32(3):285-290. doi: 10.1038/nbt.2831. Epub 2014 Feb 23.

Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, Frishman D, Grossman R, Heath A, Higdon R, Hutz MH, Janko I, Jiang L, Joshi S, Kel A, Kemnitz JW, Kohane IS, Kolker N, Lancet D, Lee E, Li W, Lisitsa A, Llerena A, Macnealy-Koch C, Marshall JC, Masuzzo P, May A, Mias G, Monroe M, Montague E, Mooney S, Nesvizhskii A, Noronha S, Omenn G, Rajasimha H, Ramamoorthy P, Sheehan J, Smarr L, Smith CV, Smith T, Snyder M, Rapole S, Srivastava S, Stanberry L, Stewart E, Toppo S, Uetz P, Verheggen K, Voy BH, Warnich L, Wilhelm SW, Yandl G.

OMICS. 2014 Jan;18(1):10-4. doi: 10.1089/omi.2013.0149.

Goodacre NF, Gerloff DL, Uetz P.

MBio. 2013 Dec 31;5(1):e00744-13. doi: 10.1128/mBio.00744-13.

Castoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, Polanco D, Dobry J, Vandewege MW, Li Q, Schott RK, Kapusta A, Minx P, Feschotte C, Uetz P, Ray DA, Hoffmann FG, Bogden R, Smith EN, Chang BS, Vonk FJ, Casewell NR, Henkel CV, Richardson MK, Mackessy SP, Bronikowski AM, Yandell M, Warren WC, Secor SM, Pollock DD.

Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):20645-50. doi: 10.1073/pnas.1314475110. Epub 2013 Dec 2. Erratum in: Proc Natl Acad Sci U S A. 2013 Dec 17;110(51). doi:10.1073/pnas.1324133111. Bronikowsi, Anne M [corrected to Bronikowski, Anne M]. Proc Natl Acad Sci U S A. 2014 Feb 25;111(8):3194.

Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, Frishman D, Grossman R, Heath A, Higdon R, Hutz MH, Janko I, Jiang L, Joshi S, Kel A, Kemnitz JW, Kohane IS, Kolker N, Lancet D, Lee E, Li W, Lisitsa A, Llerena A, MacNealy-Koch C, Marshall JC, Masuzzo P, May A, Mias G, Monroe M, Montague E, Mooney S, Nesvizhskii A, Noronha S, Omenn G, Rajasimha H, Ramamoorthy P, Sheehan J, Smarr L, Smith CV, Smith T, Snyder M, Rapole S, Srivastava S, Stanberry L, Stewart E, Toppo S, Uetz P, Verheggen K, Voy BH, Warnich L, Wilhelm SW, Yandl G.

Big Data. 2013 Dec;1(4):196-201. doi: 10.1089/big.2013.0039.

Blasche S, Wuchty S, Rajagopala SV, Uetz P.

J Virol. 2013 Dec;87(23):12745-55. doi: 10.1128/JVI.02495-13. Epub 2013 Sep 18.

Hardisty A, Roberts D; Biodiversity Informatics Community, Addink W, Aelterman B, Agosti D, Amaral-Zettler L, Ariño AH, Arvanitidis C, Backeljau T, Bailly N, Belbin L, Berendsohn W, Bertrand N, Caithness N, Campbell D, Cochrane G, Conruyt N, Culham A, Damgaard C, Davies N, Fady B, Faulwetter S, Feest A, Field D, Garnier E, Geser G, Gilbert J, Grosche, Grosser D, Hardisty A, Herbinet B, Hobern D, Jones A, de Jong Y, King D, Knapp S, Koivula H, Los W, Meyer C, Morris RA, Morrison N, Morse D, Obst M, Pafilis E, Page LM, Page R, Pape T, Parr C, Paton A, Patterson D, Paymal E, Penev L, Pollet M, Pyle R, von Raab-Straube E, Robert V, Roberts D, Robertson T, Rovellotti O, Saarenmaa H, Schalk P, Schaminee J, Schofield P, Sier A, Sierra S, Smith V, van Spronsen E, Thornton-Wood S, van Tienderen P, van Tol J, Tuama ÉÓ, Uetz P, Vaas L, Vignes Lebbe R, Vision T, Vu D, De Wever A, White R, Willis K, Young F.

BMC Ecol. 2013 Apr 15;13:16. doi: 10.1186/1472-6785-13-16. Review.

Pincheira-Donoso D, Bauer AM, Meiri S, Uetz P.

PLoS One. 2013;8(3):e59741. doi: 10.1371/journal.pone.0059741. Epub 2013 Mar 27.

Blasche S, Mörtl M, Steuber H, Siszler G, Nisa S, Schwarz F, Lavrik I, Gronewold TM, Maskos K, Donnenberg MS, Ullmann D, Uetz P, Kögl M.

PLoS One. 2013;8(3):e58937. doi: 10.1371/journal.pone.0058937. Epub 2013 Mar 14.

Uetz P.

Methods. 2012 Dec;58(4):315-6. doi: 10.1016/j.ymeth.2013.01.001. No abstract available.

Caufield JH, Sakhawalkar N, Uetz P.

Methods. 2012 Dec;58(4):317-24. doi: 10.1016/j.ymeth.2012.12.001. Epub 2012 Dec 8.

Appeltans W, Ahyong ST, Anderson G, Angel MV, Artois T, Bailly N, Bamber R, Barber A, Bartsch I, Berta A, Błażewicz-Paszkowycz M, Bock P, Boxshall G, Boyko CB, Brandão SN, Bray RA, Bruce NL, Cairns SD, Chan TY, Cheng L, Collins AG, Cribb T, Curini-Galletti M, Dahdouh-Guebas F, Davie PJ, Dawson MN, De Clerck O, Decock W, De Grave S, de Voogd NJ, Domning DP, Emig CC, Erséus C, Eschmeyer W, Fauchald K, Fautin DG, Feist SW, Fransen CH, Furuya H, Garcia-Alvarez O, Gerken S, Gibson D, Gittenberger A, Gofas S, Gómez-Daglio L, Gordon DP, Guiry MD, Hernandez F, Hoeksema BW, Hopcroft RR, Jaume D, Kirk P, Koedam N, Koenemann S, Kolb JB, Kristensen RM, Kroh A, Lambert G, Lazarus DB, Lemaitre R, Longshaw M, Lowry J, Macpherson E, Madin LP, Mah C, Mapstone G, McLaughlin PA, Mees J, Meland K, Messing CG, Mills CE, Molodtsova TN, Mooi R, Neuhaus B, Ng PK, Nielsen C, Norenburg J, Opresko DM, Osawa M, Paulay G, Perrin W, Pilger JF, Poore GC, Pugh P, Read GB, Reimer JD, Rius M, Rocha RM, Saiz-Salinas JI, Scarabino V, Schierwater B, Schmidt-Rhaesa A, Schnabel KE, Schotte M, Schuchert P, Schwabe E, Segers H, Self-Sullivan C, Shenkar N, Siegel V, Sterrer W, Stöhr S, Swalla B, Tasker ML, Thuesen EV, Timm T, Todaro MA, Turon X, Tyler S, Uetz P, van der Land J, Vanhoorne B, van Ofwegen LP, van Soest RW, Vanaverbeke J, Walker-Smith G, Walter TC, Warren A, Williams GC, Wilson SP, Costello MJ.

Curr Biol. 2012 Dec 4;22(23):2189-202. doi: 10.1016/j.cub.2012.09.036. Epub 2012 Nov 15.

Rajagopala SV, Sikorski P, Caufield JH, Tovchigrechko A, Uetz P.

Methods. 2012 Dec;58(4):392-9. doi: 10.1016/j.ymeth.2012.07.015. Epub 2012 Jul 24.

Häuser R, Pech M, Kijek J, Yamamoto H, Titz B, Naeve F, Tovchigrechko A, Yamamoto K, Szaflarski W, Takeuchi N, Stellberger T, Diefenbacher ME, Nierhaus KH, Uetz P.

PLoS Genet. 2012;8(7):e1002815. doi: 10.1371/journal.pgen.1002815. Epub 2012 Jul 19.

Häuser R, Blasche S, Dokland T, Haggård-Ljungquist E, von Brunn A, Salas M, Casjens S, Molineux I, Uetz P.

Adv Virus Res. 2012;83:219-98. doi: 10.1016/B978-0-12-394438-2.00006-2. Review.

Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman FS, Cesareni G, Chatr-aryamontri A, Chautard E, Chen C, Dumousseau M, Goll J, Hancock RE, Hannick LI, Jurisica I, Khadake J, Lynn DJ, Mahadevan U, Perfetto L, Raghunath A, Ricard-Blum S, Roechert B, Salwinski L, Stümpflen V, Tyers M, Uetz P, Xenarios I, Hermjakob H.

Nat Methods. 2012 Apr;9(4):345-50. doi: 10.1038/nmeth.1931. Erratum in: Nat Methods. 2012 Jun;9(6):626. Brinkman, Fiona [corrected to Brinkman, Fiona S L]; Hancock, Robert [corrected to Hancock, Robert E W].

Häuser R, Stellberger T, Rajagopala SV, Uetz P.

Methods Mol Biol. 2012;812:21-38. doi: 10.1007/978-1-61779-455-1_2.

Häuser R, Stellberger T, Rajagopala SV, Uetz P.

Methods Mol Biol. 2012;812:1-20. doi: 10.1007/978-1-61779-455-1_1.

Stellberger T, Häuser R, Uetz P, Brunn Av.

Methods Mol Biol. 2012;815:277-88. doi: 10.1007/978-1-61779-424-7_21.