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Items: 31

1.

Genomic characterization of mumps viruses from a large-scale mumps outbreak in Arkansas, 2016.

Alkam D, Jenjaroenpun P, Wongsurawat T, Udaondo Z, Patumcharoenpol P, Robeson M, Haselow D, Mason W, Nookaew I, Ussery D, Jun SR.

Infect Genet Evol. 2019 Jul 15;75:103965. doi: 10.1016/j.meegid.2019.103965. [Epub ahead of print]

PMID:
31319177
2.

Microbiomes as the new keystone for life sciences development.

Udaondo Z, Molina-Santiago C.

Microb Biotechnol. 2019 Jul;12(4):579-581. doi: 10.1111/1751-7915.13424. Epub 2019 May 7. No abstract available.

3.

Draft Genome Sequences of 48 Vancomycin-Resistant Enterococcus faecium Strains Isolated from Inpatients with Bacteremia and Urinary Tract Infection.

Udaondo Z, Wongsurawat T, Jenjaroenpun P, Anderson C, Lopez J, Mohan M, Tytarenko R, Walker B, Nookaew I, Ussery D, Kothari A, Jun SR.

Microbiol Resour Announc. 2019 Apr 11;8(15). pii: e00222-19. doi: 10.1128/MRA.00222-19.

4.

Towards a better metabolic engineering reference: the microbial chassis.

Abram KZ, Udaondo Z.

Microb Biotechnol. 2018 Dec 27. doi: 10.1111/1751-7915.13363. [Epub ahead of print]

5.

Genome Sequence of the Oocydin A-Producing Rhizobacterium Serratia plymuthica 4Rx5.

Matilla MA, Udaondo Z, Salmond GPC.

Microbiol Resour Announc. 2018 Sep 20;7(11). pii: e00997-18. doi: 10.1128/MRA.00997-18. eCollection 2018 Sep.

6.

Ruminal metagenomic libraries as a source of relevant hemicellulolytic enzymes for biofuel production.

Duque E, Daddaoua A, Cordero BF, Udaondo Z, Molina-Santiago C, Roca A, Solano J, Molina-Alcaide E, Segura A, Ramos JL.

Microb Biotechnol. 2018 Jul;11(4):781-787. doi: 10.1111/1751-7915.13269. Epub 2018 Apr 17.

7.

Regulation of carbohydrate degradation pathways in Pseudomonas involves a versatile set of transcriptional regulators.

Udaondo Z, Ramos JL, Segura A, Krell T, Daddaoua A.

Microb Biotechnol. 2018 May;11(3):442-454. doi: 10.1111/1751-7915.13263. Epub 2018 Apr 2. Review.

8.

Interspecies cross-talk between co-cultured Pseudomonas putida and Escherichia coli.

Molina-Santiago C, Udaondo Z, Cordero BF, Ramos JL.

Environ Microbiol Rep. 2017 Aug;9(4):441-448. doi: 10.1111/1758-2229.12553. Epub 2017 Jun 27.

PMID:
28585781
9.

The pangenome of the genus Clostridium.

Udaondo Z, Duque E, Ramos JL.

Environ Microbiol. 2017 Jul;19(7):2588-2603. doi: 10.1111/1462-2920.13732. Epub 2017 May 29.

PMID:
28321969
10.

Genome Sequence of Serratia marcescens MSU97, a Plant-Associated Bacterium That Makes Multiple Antibiotics.

Matilla MA, Udaondo Z, Krell T, Salmond GP.

Genome Announc. 2017 Mar 2;5(9). pii: e01752-16. doi: 10.1128/genomeA.01752-16.

11.

Iron Uptake Analysis in a Set of Clinical Isolates of Pseudomonas putida.

Molina L, Geoffroy VA, Segura A, Udaondo Z, Ramos JL.

Front Microbiol. 2016 Dec 27;7:2100. doi: 10.3389/fmicb.2016.02100. eCollection 2016.

12.

Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene.

Molina-Santiago C, Udaondo Z, Gómez-Lozano M, Molin S, Ramos JL.

Environ Microbiol. 2017 Feb;19(2):645-658. doi: 10.1111/1462-2920.13585. Epub 2016 Dec 8.

PMID:
27768818
13.

Pseudomonas putida as a platform for the synthesis of aromatic compounds.

Molina-Santiago C, Cordero BF, Daddaoua A, Udaondo Z, Manzano J, Valdivia M, Segura A, Ramos JL, Duque E.

Microbiology. 2016 Sep;162(9):1535-1543. doi: 10.1099/mic.0.000333. Epub 2016 Jul 14.

PMID:
27417954
14.

Genome Sequence of Serratia plymuthica A153, a Model Rhizobacterium for the Investigation of the Synthesis and Regulation of Haterumalides, Zeamine, and Andrimid.

Matilla MA, Drew A, Udaondo Z, Krell T, Salmond GP.

Genome Announc. 2016 May 19;4(3). pii: e00373-16. doi: 10.1128/genomeA.00373-16.

15.

Specific Gene Loci of Clinical Pseudomonas putida Isolates.

Molina L, Udaondo Z, Duque E, Fernández M, Bernal P, Roca A, de la Torre J, Ramos JL.

PLoS One. 2016 Jan 28;11(1):e0147478. doi: 10.1371/journal.pone.0147478. eCollection 2016.

16.

First- and second-generation biochemicals from sugars: biosynthesis of itaconic acid.

Ramos JL, Udaondo Z, Fernández B, Molina C, Daddaoua A, Segura A, Duque E.

Microb Biotechnol. 2016 Jan;9(1):8-10. doi: 10.1111/1751-7915.12333. Epub 2015 Dec 7. No abstract available.

17.

Draft Genome Sequence of Pseudomonas putida JLR11, a Facultative Anaerobic 2,4,6-Trinitrotoluene Biotransforming Bacterium.

Pascual J, Udaondo Z, Molina L, Segura A, Esteve-Núñez A, Caballero A, Duque E, Ramos JL, van Dillewijn P.

Genome Announc. 2015 Sep 3;3(5). pii: e00904-15. doi: 10.1128/genomeA.00904-15.

18.

Analysis of the core genome and pangenome of Pseudomonas putida.

Udaondo Z, Molina L, Segura A, Duque E, Ramos JL.

Environ Microbiol. 2016 Oct;18(10):3268-3283. doi: 10.1111/1462-2920.13015. Epub 2015 Sep 16.

PMID:
26261031
19.

Whole-genome analysis of Azoarcus sp. strain CIB provides genetic insights to its different lifestyles and predicts novel metabolic features.

Martín-Moldes Z, Zamarro MT, Del Cerro C, Valencia A, Gómez MJ, Arcas A, Udaondo Z, García JL, Nogales J, Carmona M, Díaz E.

Syst Appl Microbiol. 2015 Oct;38(7):462-71. doi: 10.1016/j.syapm.2015.07.002. Epub 2015 Jul 22.

PMID:
26259823
20.

Efflux pump-deficient mutants as a platform to search for microbes that produce antibiotics.

Molina-Santiago C, Udaondo Z, Daddaoua A, Roca A, Martín J, Pérez-Victoria I, Reyes F, Ramos JL.

Microb Biotechnol. 2015 Jul;8(4):716-25. doi: 10.1111/1751-7915.12295. Epub 2015 Jun 8.

21.

Mechanisms of solvent resistance mediated by interplay of cellular factors in Pseudomonas putida.

Ramos JL, Sol Cuenca M, Molina-Santiago C, Segura A, Duque E, Gómez-García MR, Udaondo Z, Roca A.

FEMS Microbiol Rev. 2015 Jul;39(4):555-66. doi: 10.1093/femsre/fuv006. Epub 2015 Apr 30. Review.

PMID:
25934123
22.

Synergic role of the two ars operons in arsenic tolerance in Pseudomonas putida KT2440.

Fernández M, Udaondo Z, Niqui JL, Duque E, Ramos JL.

Environ Microbiol Rep. 2014 Oct;6(5):483-9.

PMID:
25646541
23.

Differential transcriptional response to antibiotics by Pseudomonas putida DOT-T1E.

Molina-Santiago C, Daddaoua A, Gómez-Lozano M, Udaondo Z, Molin S, Ramos JL.

Environ Microbiol. 2015 Sep;17(9):3251-62. doi: 10.1111/1462-2920.12775. Epub 2015 Feb 14.

PMID:
25581266
24.

Draft whole-genome sequence of the antibiotic-producing soil isolate Pseudomonas sp. strain 250J.

Molina-Santiago C, Udaondo Z, Ramos JL.

Environ Microbiol Rep. 2015 Apr;7(2):288-92. doi: 10.1111/1758-2229.12245. Epub 2015 Jan 23.

PMID:
25403737
25.

Antibiotic resistance determinants in a Pseudomonas putida strain isolated from a hospital.

Molina L, Udaondo Z, Duque E, Fernández M, Molina-Santiago C, Roca A, Porcel M, de la Torre J, Segura A, Plesiat P, Jeannot K, Ramos JL.

PLoS One. 2014 Jan 17;9(1):e81604. doi: 10.1371/journal.pone.0081604. eCollection 2014.

26.

Complete Genome Sequence of a Pseudomonas putida Clinical Isolate, Strain H8234.

Molina L, Bernal P, Udaondo Z, Segura A, Ramos JL.

Genome Announc. 2013 Jul 18;1(4). pii: e00496-13. doi: 10.1128/genomeA.00496-13.

27.

Metabolic potential of the organic-solvent tolerant Pseudomonas putida DOT-T1E deduced from its annotated genome.

Udaondo Z, Molina L, Daniels C, Gómez MJ, Molina-Henares MA, Matilla MA, Roca A, Fernández M, Duque E, Segura A, Ramos JL.

Microb Biotechnol. 2013 Sep;6(5):598-611. doi: 10.1111/1751-7915.12061. Epub 2013 Jul 1.

28.

Analysis of the plant growth-promoting properties encoded by the genome of the rhizobacterium Pseudomonas putida BIRD-1.

Roca A, Pizarro-Tobías P, Udaondo Z, Fernández M, Matilla MA, Molina-Henares MA, Molina L, Segura A, Duque E, Ramos JL.

Environ Microbiol. 2013 Mar;15(3):780-94. doi: 10.1111/1462-2920.12037. Epub 2012 Dec 4.

PMID:
23206161
29.

Genes for carbon metabolism and the ToxA virulence factor in Pseudomonas aeruginosa are regulated through molecular interactions of PtxR and PtxS.

Daddaoua A, Fillet S, Fernández M, Udaondo Z, Krell T, Ramos JL.

PLoS One. 2012;7(7):e39390. doi: 10.1371/journal.pone.0039390. Epub 2012 Jul 23.

30.

Analysis of solvent tolerance in Pseudomonas putida DOT-T1E based on its genome sequence and a collection of mutants.

Udaondo Z, Duque E, Fernández M, Molina L, de la Torre J, Bernal P, Niqui JL, Pini C, Roca A, Matilla MA, Molina-Henares MA, Silva-Jiménez H, Navarro-Avilés G, Busch A, Lacal J, Krell T, Segura A, Ramos JL.

FEBS Lett. 2012 Aug 31;586(18):2932-8. doi: 10.1016/j.febslet.2012.07.031. Epub 2012 Jul 20. Review.

31.

Evolution of antibiotic resistance, catabolic pathways and niche colonization.

Molina-Santiago C, Udaondo Z, Marin A, García-Salamanca A, Michán C, Daniels C, Molina L, Ramos JL.

Microb Biotechnol. 2012 Jul;5(4):452-4. doi: 10.1111/j.1751-7915.2012.00335.x. No abstract available.

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