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Whole Genome Re-sequencing Reveals Natural Variation and Adaptive Evolution of Phytophthora sojae.

Zhang X, Liu B, Zou F, Shen D, Yin Z, Wang R, He F, Wang Y, Tyler BM, Fan W, Qian W, Dou D.

Front Microbiol. 2019 Nov 29;10:2792. doi: 10.3389/fmicb.2019.02792. eCollection 2019.


Effector gene silencing mediated by histone methylation underpins host adaptation in an oomycete plant pathogen.

Wang L, Chen H, Li J, Shu H, Zhang X, Wang Y, Tyler BM, Dong S.

Nucleic Acids Res. 2019 Dec 10. pii: gkz1160. doi: 10.1093/nar/gkz1160. [Epub ahead of print]


PcMuORP1, an Oxathiapiprolin-Resistance Gene, Functions as a Novel Selection Marker for Phytophthora Transformation and CRISPR/Cas9 Mediated Genome Editing.

Wang W, Xue Z, Miao J, Cai M, Zhang C, Li T, Zhang B, Tyler BM, Liu X.

Front Microbiol. 2019 Oct 22;10:2402. doi: 10.3389/fmicb.2019.02402. eCollection 2019.


PlantSimLab - a modeling and simulation web tool for plant biologists.

Ha S, Dimitrova E, Hoops S, Altarawy D, Ansariola M, Deb D, Glazebrook J, Hillmer R, Shahin H, Katagiri F, McDowell J, Megraw M, Setubal J, Tyler BM, Laubenbacher R.

BMC Bioinformatics. 2019 Oct 21;20(1):508. doi: 10.1186/s12859-019-3094-9.


Stripe Rust Effector PstGSRE1 Disrupts Nuclear Localization of ROS-Promoting Transcription Factor TaLOL2 to Defeat ROS-Induced Defense in Wheat.

Qi T, Guo J, Liu P, He F, Wan C, Islam MA, Tyler BM, Kang Z, Guo J.

Mol Plant. 2019 Dec 2;12(12):1624-1638. doi: 10.1016/j.molp.2019.09.010. Epub 2019 Oct 10.


Negative regulators of plant immunity derived from cinnamyl alcohol dehydrogenases are targeted by multiple Phytophthora Avr3a-like effectors.

Li T, Wang Q, Feng R, Li L, Ding L, Fan G, Li W, Du Y, Zhang M, Huang G, Schäfer P, Meng Y, Tyler BM, Shan W.

New Phytol. 2019 Aug 22. doi: 10.1111/nph.16139. [Epub ahead of print]


Tethering of Multi-Vesicular Bodies and the Tonoplast to the Plasma Membrane in Plants.

Tao K, Waletich JR, Wise H, Arredondo F, Tyler BM.

Front Plant Sci. 2019 May 22;10:636. doi: 10.3389/fpls.2019.00636. eCollection 2019.


Defense and Counterdefense During Plant-Pathogenic Oomycete Infection.

Wang Y, Tyler BM, Wang Y.

Annu Rev Microbiol. 2019 Sep 8;73:667-696. doi: 10.1146/annurev-micro-020518-120022. Epub 2019 Jun 21.


Manipulating Endoplasmic Reticulum-Plasma Membrane Tethering in Plants Through Fluorescent Protein Complementation.

Tao K, Waletich JR, Arredondo F, Tyler BM.

Front Plant Sci. 2019 May 22;10:635. doi: 10.3389/fpls.2019.00635. eCollection 2019.


Overall Survival in Malignant Glioma Is Significantly Prolonged by Neurosurgical Delivery of Etoposide and Temozolomide from a Thermo-Responsive Biodegradable Paste.

Smith SJ, Tyler BM, Gould T, Veal GJ, Gorelick N, Rowlinson J, Serra R, Ritchie A, Berry P, Otto A, Choi J, Skuli N, Estevez-Cebrero M, Shakesheff KM, Brem H, Grundy RG, Rahman R.

Clin Cancer Res. 2019 Aug 15;25(16):5094-5106. doi: 10.1158/1078-0432.CCR-18-3850. Epub 2019 May 21.


Infection mechanisms and putative effector repertoire of the mosquito pathogenic oomycete Pythium guiyangense uncovered by genomic analysis.

Shen D, Tang Z, Wang C, Wang J, Dong Y, Chen Y, Wei Y, Cheng B, Zhang M, Grenville-Briggs LJ, Tyler BM, Dou D, Xia A.

PLoS Genet. 2019 Apr 24;15(4):e1008116. doi: 10.1371/journal.pgen.1008116. eCollection 2019 Apr.


Mitotic Recombination and Rapid Genome Evolution in the Invasive Forest Pathogen Phytophthora ramorum.

Dale AL, Feau N, Everhart SE, Dhillon B, Wong B, Sheppard J, Bilodeau GJ, Brar A, Tabima JF, Shen D, Brasier CM, Tyler BM, Grünwald NJ, Hamelin RC.

mBio. 2019 Mar 12;10(2). pii: e02452-18. doi: 10.1128/mBio.02452-18.


Haplotype-Phased Genome Assembly of Virulent Phytophthora ramorum Isolate ND886 Facilitated by Long-Read Sequencing Reveals Effector Polymorphisms and Copy Number Variation.

Malar C M, Yuzon JD, Das S, Das A, Panda A, Ghosh S, Tyler BM, Kasuga T, Tripathy S.

Mol Plant Microbe Interact. 2019 Aug;32(8):1047-1060. doi: 10.1094/MPMI-08-18-0222-R. Epub 2019 Jun 10.


A miniature multi-contrast microscope for functional imaging in freely behaving animals.

Senarathna J, Yu H, Deng C, Zou AL, Issa JB, Hadjiabadi DH, Gil S, Wang Q, Tyler BM, Thakor NV, Pathak AP.

Nat Commun. 2019 Jan 9;10(1):99. doi: 10.1038/s41467-018-07926-z.


Expansion and Divergence of Argonaute Genes in the Oomycete Genus Phytophthora.

Bollmann SR, Press CM, Tyler BM, Grünwald NJ.

Front Microbiol. 2018 Nov 30;9:2841. doi: 10.3389/fmicb.2018.02841. eCollection 2018.


Protocol of Phytophthora capsici Transformation Using the CRISPR-Cas9 System.

Wang Z, Tyler BM, Liu X.

Methods Mol Biol. 2018;1848:265-274. doi: 10.1007/978-1-4939-8724-5_17.


A Long-Term Study of a Lipid-Buprenorphine Implant in Rats.

Guarnieri M, Brayton C, Tyler BM.

J Vet Med. 2018 Jul 9;2018:2616152. doi: 10.1155/2018/2616152. eCollection 2018.


Targeted Local Therapy for Management of Intracranial High-Grade Gliomas.

Paldor I, Chaichana KL, Brem H, Tyler BM.

Prog Neurol Surg. 2018;32:159-171. doi: 10.1159/000469688. Epub 2018 Jul 10. Review.


Mutations in ORP1 Conferring Oxathiapiprolin Resistance Confirmed by Genome Editing using CRISPR/Cas9 in Phytophthora capsici and P. sojae.

Miao J, Chi Y, Lin D, Tyler BM, Liu X.

Phytopathology. 2018 Dec;108(12):1412-1419. doi: 10.1094/PHYTO-01-18-0010-R. Epub 2018 Oct 31.


Suspected Lonely Mouse Syndrome as a Cage Effect in a Drug Safety Study.

Ye X, Itzoe M, Sarabia-Estrada R, DeTolla L, Tyler BM, Guarnieri M.

J Vet Med. 2018 May 9;2018:9562803. doi: 10.1155/2018/9562803. eCollection 2018.


Oxysterol-binding protein-related protein 2 is not essential for Phytophthora sojae based on CRISPR/Cas9 deletions.

Miao J, Li X, Lin D, Liu X, Tyler BM.

Environ Microbiol Rep. 2018 Jun;10(3):293-298. doi: 10.1111/1758-2229.12638. Epub 2018 Apr 6.


Leucine-rich repeat receptor-like gene screen reveals that Nicotiana RXEG1 regulates glycoside hydrolase 12 MAMP detection.

Wang Y, Xu Y, Sun Y, Wang H, Qi J, Wan B, Ye W, Lin Y, Shao Y, Dong S, Tyler BM, Wang Y.

Nat Commun. 2018 Feb 9;9(1):594. doi: 10.1038/s41467-018-03010-8.


An expanded phylogeny for the genus Phytophthora.

Yang X, Tyler BM, Hong C.

IMA Fungus. 2017 Dec;8(2):355-384. doi: 10.5598/imafungus.2017.08.02.09. Epub 2017 Nov 21.


Conserved RxLR Effectors From Oomycetes Hyaloperonospora arabidopsidis and Phytophthora sojae Suppress PAMP- and Effector-Triggered Immunity in Diverse Plants.

Deb D, Anderson RG, How-Yew-Kin T, Tyler BM, McDowell JM.

Mol Plant Microbe Interact. 2018 Mar;31(3):374-385. doi: 10.1094/MPMI-07-17-0169-FI. Epub 2018 Jan 19.


Developing Therapies for Brain Tumors: The Impact of the Johns Hopkins Hunterian Neurosurgical Research Laboratory.

Brem H, Sankey EW, Liu A, Mangraviti A, Tyler BM.

Trans Am Clin Climatol Assoc. 2017;128:55-74. Review.


The efficacy of lapatinib and nilotinib in combination with radiation therapy in a model of NF2 associated peripheral schwannoma.

Paldor I, Abbadi S, Bonne N, Ye X, Rodriguez FJ, Rowshanshad D, Itzoe M, Vigilar V, Giovannini M, Brem H, Blakeley JO, Tyler BM.

J Neurooncol. 2017 Oct;135(1):47-56. doi: 10.1007/s11060-017-2567-9. Epub 2017 Jul 22.


Whole Genome Sequences of the Raspberry and Strawberry Pathogens Phytophthora rubi and P. fragariae.

Tabima JF, Kronmiller BA, Press CM, Tyler BM, Zasada IA, Grünwald NJ.

Mol Plant Microbe Interact. 2017 Oct;30(10):767-769. doi: 10.1094/MPMI-04-17-0081-A. Epub 2017 Aug 22.


Association of nausea with buprenorphine analgesia for rats.

Sarabia-Estrada R, Cowan A, Tyler BM, Guarnieri M.

Lab Anim (NY). 2017 May 22;46(6):242-244. doi: 10.1038/laban.1277. No abstract available.


The fog of war: How network buffering protects plants' defense secrets from pathogens.

Tyler BM.

PLoS Genet. 2017 May 4;13(5):e1006713. doi: 10.1371/journal.pgen.1006713. eCollection 2017 May. No abstract available.


Identification and characterization of simple sequence repeats (SSRs) for population studies of Puccinia novopanici.

Orquera-Tornakian GK, Garrido P, Kronmiller B, Hunger R, Tyler BM, Garzon CD, Marek SM.

J Microbiol Methods. 2017 Aug;139:113-122. doi: 10.1016/j.mimet.2017.04.011. Epub 2017 Apr 27.


Nuclear localization of a putative Phytophthora sojae bZIP1 transcription factor is mediated by multiple targeting motifs.

Fang Y, Tyler BM.

Mol Microbiol. 2017 May;104(4):621-635. doi: 10.1111/mmi.13652. Epub 2017 Mar 16.


Distinctive Nuclear Localization Signals in the Oomycete Phytophthora sojae.

Fang Y, Jang HS, Watson GW, Wellappili DP, Tyler BM.

Front Microbiol. 2017 Feb 2;8:10. doi: 10.3389/fmicb.2017.00010. eCollection 2017.


Phytophthora megakarya and P. palmivora, closely related causal agents of cacao black pod rot, underwent increases in genome sizes and gene numbers by different mechanisms.

Ali SS, Shao J, Lary DJ, Kronmiller B, Shen D, Strem MD, Amoako-Attah I, Akrofi AY, Begoude BA, Ten Hoopen GM, Coulibaly K, Kebe BI, Melnick RL, Guiltinan MJ, Tyler BM, Meinhardt LW, Bailey BA.

Genome Biol Evol. 2017 Feb 10. doi: 10.1093/gbe/evx021. [Epub ahead of print] No abstract available.


Efficient Genome Editing in the Oomycete Phytophthora sojae Using CRISPR/Cas9.

Fang Y, Cui L, Gu B, Arredondo F, Tyler BM.

Curr Protoc Microbiol. 2017 Feb 6;44:21A.1.1-21A.1.26. doi: 10.1002/cpmc.25.


A paralogous decoy protects Phytophthora sojae apoplastic effector PsXEG1 from a host inhibitor.

Ma Z, Zhu L, Song T, Wang Y, Zhang Q, Xia Y, Qiu M, Lin Y, Li H, Kong L, Fang Y, Ye W, Wang Y, Dong S, Zheng X, Tyler BM, Wang Y.

Science. 2017 Feb 17;355(6326):710-714. doi: 10.1126/science.aai7919. Epub 2017 Jan 12.


EumicrobeDBLite: a lightweight genomic resource and analytic platform for draft oomycete genomes.

Panda A, Sen D, Ghosh A, Gupta A, C MM, Prakash Mishra G, Singh D, Ye W, Tyler BM, Tripathy S.

Mol Plant Pathol. 2018 Jan;19(1):227-237. doi: 10.1111/mpp.12505. Epub 2017 Jan 3.


Combination Therapy with Anti-PD-1, Anti-TIM-3, and Focal Radiation Results in Regression of Murine Gliomas.

Kim JE, Patel MA, Mangraviti A, Kim ES, Theodros D, Velarde E, Liu A, Sankey EW, Tam A, Xu H, Mathios D, Jackson CM, Harris-Bookman S, Garzon-Muvdi T, Sheu M, Martin AM, Tyler BM, Tran PT, Ye X, Olivi A, Taube JM, Burger PC, Drake CG, Brem H, Pardoll DM, Lim M.

Clin Cancer Res. 2017 Jan 1;23(1):124-136. doi: 10.1158/1078-0432.CCR-15-1535. Epub 2016 Jun 29.


A Phytophthora sojae effector suppresses endoplasmic reticulum stress-mediated immunity by stabilizing plant Binding immunoglobulin Proteins.

Jing M, Guo B, Li H, Yang B, Wang H, Kong G, Zhao Y, Xu H, Wang Y, Ye W, Dong S, Qiao Y, Tyler BM, Ma W, Wang Y.

Nat Commun. 2016 Jun 3;7:11685. doi: 10.1038/ncomms11685.


C239S Mutation in the β-Tubulin of Phytophthora sojae Confers Resistance to Zoxamide.

Cai M, Miao J, Song X, Lin D, Bi Y, Chen L, Liu X, Tyler BM.

Front Microbiol. 2016 May 20;7:762. doi: 10.3389/fmicb.2016.00762. eCollection 2016.


Sequencing of the Litchi Downy Blight Pathogen Reveals It Is a Phytophthora Species With Downy Mildew-Like Characteristics.

Ye W, Wang Y, Shen D, Li D, Pu T, Jiang Z, Zhang Z, Zheng X, Tyler BM, Wang Y.

Mol Plant Microbe Interact. 2016 Jul;29(7):573-83. doi: 10.1094/MPMI-03-16-0056-R. Epub 2016 Jun 20.


Diverse Evolutionary Trajectories for Small RNA Biogenesis Genes in the Oomycete Genus Phytophthora.

Bollmann SR, Fang Y, Press CM, Tyler BM, Grünwald NJ.

Front Plant Sci. 2016 Mar 15;7:284. doi: 10.3389/fpls.2016.00284. eCollection 2016.


The Johns Hopkins Hunterian Laboratory Philosophy: Mentoring Students in a Scientific Neurosurgical Research Laboratory.

Tyler BM, Liu A, Sankey EW, Mangraviti A, Barone MA, Brem H.

Acad Med. 2016 Jun;91(6):778-84. doi: 10.1097/ACM.0000000000001136.


Efficient disruption and replacement of an effector gene in the oomycete Phytophthora sojae using CRISPR/Cas9.

Fang Y, Tyler BM.

Mol Plant Pathol. 2016 Jan;17(1):127-39. doi: 10.1111/mpp.12318. Epub 2015 Nov 11.


Inhibition of Corneal Neovascularization by Subconjunctival Injection of Fc-Endostatin, a Novel Inhibitor of Angiogenesis.

Yoshida J, Wicks RT, Zambrano AI, Tyler BM, Javaherian K, Grossman R, Daoud YJ, Gehlbach P, Brem H, Stark WJ.

J Ophthalmol. 2015;2015:137136. doi: 10.1155/2015/137136. Epub 2015 Sep 28.


Enhanced resistance in Theobroma cacao against oomycete and fungal pathogens by secretion of phosphatidylinositol-3-phosphate-binding proteins.

Helliwell EE, Vega-Arreguín J, Shi Z, Bailey B, Xiao S, Maximova SN, Tyler BM, Guiltinan MJ.

Plant Biotechnol J. 2016 Mar;14(3):875-86. doi: 10.1111/pbi.12436. Epub 2015 Jul 27.


Two Theobroma cacao genotypes with contrasting pathogen tolerance show aberrant transcriptional and ROS responses after salicylic acid treatment.

Fister AS, O'Neil ST, Shi Z, Zhang Y, Tyler BM, Guiltinan MJ, Maximova SN.

J Exp Bot. 2015 Oct;66(20):6245-58. doi: 10.1093/jxb/erv334. Epub 2015 Jul 10.


A Phytophthora sojae Glycoside Hydrolase 12 Protein Is a Major Virulence Factor during Soybean Infection and Is Recognized as a PAMP.

Ma Z, Song T, Zhu L, Ye W, Wang Y, Shao Y, Dong S, Zhang Z, Dou D, Zheng X, Tyler BM, Wang Y.

Plant Cell. 2015 Jul;27(7):2057-72. doi: 10.1105/tpc.15.00390. Epub 2015 Jul 10.


Phytophthora capsici homologue of the cell cycle regulator SDA1 is required for sporangial morphology, mycelial growth and plant infection.

Zhu C, Yang X, Lv R, Li Z, Ding X, Tyler BM, Zhang X.

Mol Plant Pathol. 2016 Apr;17(3):369-87. doi: 10.1111/mpp.12285. Epub 2015 Aug 27.


Crystal structure of the effector AvrLm4-7 of Leptosphaeria maculans reveals insights into its translocation into plant cells and recognition by resistance proteins.

Blondeau K, Blaise F, Graille M, Kale SD, Linglin J, Ollivier B, Labarde A, Lazar N, Daverdin G, Balesdent MH, Choi DH, Tyler BM, Rouxel T, van Tilbeurgh H, Fudal I.

Plant J. 2015 Aug;83(4):610-24. doi: 10.1111/tpj.12913. Epub 2015 Jul 14.

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