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Items: 1 to 50 of 97

1.

Mucosal microbiota of intestinal polyps reveals putative biomarkers of colorectal cancer.

Mangifesta M, Mancabelli L, Milani C, Gaiani F, de'Angelis N, de'Angelis GL, van Sinderen D, Ventura M, Turroni F.

Sci Rep. 2018 Sep 18;8(1):13974. doi: 10.1038/s41598-018-32413-2.

2.

Bifidobacterium bifidum PRL2010 alleviates intestinal ischemia/reperfusion injury.

Duranti S, Vivo V, Zini I, Milani C, Mangifesta M, Anzalone R, Mancabelli L, Viappiani A, Cantoni AM, Barocelli E, van Sinderen D, Bertoni S, Turroni F.

PLoS One. 2018 Aug 30;13(8):e0202670. doi: 10.1371/journal.pone.0202670. eCollection 2018.

3.

Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX.

Milani C, Casey E, Lugli GA, Moore R, Kaczorowska J, Feehily C, Mangifesta M, Mancabelli L, Duranti S, Turroni F, Bottacini F, Mahony J, Cotter PD, McAuliffe FM, van Sinderen D, Ventura M.

Microbiome. 2018 Aug 20;6(1):145. doi: 10.1186/s40168-018-0527-z.

4.

Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome.

Ferretti P, Pasolli E, Tett A, Asnicar F, Gorfer V, Fedi S, Armanini F, Truong DT, Manara S, Zolfo M, Beghini F, Bertorelli R, De Sanctis V, Bariletti I, Canto R, Clementi R, Cologna M, Crifò T, Cusumano G, Gottardi S, Innamorati C, Masè C, Postai D, Savoi D, Duranti S, Lugli GA, Mancabelli L, Turroni F, Ferrario C, Milani C, Mangifesta M, Anzalone R, Viappiani A, Yassour M, Vlamakis H, Xavier R, Collado CM, Koren O, Tateo S, Soffiati M, Pedrotti A, Ventura M, Huttenhower C, Bork P, Segata N.

Cell Host Microbe. 2018 Jul 11;24(1):133-145.e5. doi: 10.1016/j.chom.2018.06.005.

5.

Reconstruction of the bifidobacterial pan-secretome reveals the network of extracellular interactions between bifidobacteria and the infant gut.

Lugli GA, Mancino W, Milani C, Duranti S, Turroni F, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Jun 8. pii: AEM.00796-18. doi: 10.1128/AEM.00796-18. [Epub ahead of print]

PMID:
29884754
6.

Phylotype-Level Profiling of Lactobacilli in Highly Complex Environments by Means of an Internal Transcribed Spacer-Based Metagenomic Approach.

Milani C, Duranti S, Mangifesta M, Lugli GA, Turroni F, Mancabelli L, Viappiani A, Anzalone R, Alessandri G, Ossiprandi MC, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Jul 2;84(14). pii: e00706-18. doi: 10.1128/AEM.00706-18. Print 2018 Jul 15.

7.

Understanding the gut-kidney axis in nephrolithiasis: an analysis of the gut microbiota composition and functionality of stone formers.

Ticinesi A, Milani C, Guerra A, Allegri F, Lauretani F, Nouvenne A, Mancabelli L, Lugli GA, Turroni F, Duranti S, Mangifesta M, Viappiani A, Ferrario C, Dodi R, Dall'Asta M, Del Rio D, Ventura M, Meschi T.

Gut. 2018 Dec;67(12):2097-2106. doi: 10.1136/gutjnl-2017-315734. Epub 2018 Apr 28.

PMID:
29705728
8.

Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.

Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M.

Syst Appl Microbiol. 2018 May;41(3):173-183. doi: 10.1016/j.syapm.2018.01.002. Epub 2018 Jan 31.

PMID:
29395537
9.

Tracking the Taxonomy of the Genus Bifidobacterium Based on a Phylogenomic Approach.

Lugli GA, Milani C, Duranti S, Mancabelli L, Mangifesta M, Turroni F, Viappiani A, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2018 Jan 31;84(4). pii: e02249-17. doi: 10.1128/AEM.02249-17. Print 2018 Feb 15.

10.

Identification of universal gut microbial biomarkers of common human intestinal diseases by meta-analysis.

Mancabelli L, Milani C, Lugli GA, Turroni F, Cocconi D, van Sinderen D, Ventura M.

FEMS Microbiol Ecol. 2017 Dec 1;93(12). doi: 10.1093/femsec/fix153.

PMID:
29126267
11.

The First Microbial Colonizers of the Human Gut: Composition, Activities, and Health Implications of the Infant Gut Microbiota.

Milani C, Duranti S, Bottacini F, Casey E, Turroni F, Mahony J, Belzer C, Delgado Palacio S, Arboleya Montes S, Mancabelli L, Lugli GA, Rodriguez JM, Bode L, de Vos W, Gueimonde M, Margolles A, van Sinderen D, Ventura M.

Microbiol Mol Biol Rev. 2017 Nov 8;81(4). pii: e00036-17. doi: 10.1128/MMBR.00036-17. Print 2017 Dec. Review.

12.

Glycan Utilization and Cross-Feeding Activities by Bifidobacteria.

Turroni F, Milani C, Duranti S, Mahony J, van Sinderen D, Ventura M.

Trends Microbiol. 2018 Apr;26(4):339-350. doi: 10.1016/j.tim.2017.10.001. Epub 2017 Oct 28. Review.

PMID:
29089173
13.

Bifidobacteria and the infant gut: an example of co-evolution and natural selection.

Turroni F, Milani C, Duranti S, Ferrario C, Lugli GA, Mancabelli L, van Sinderen D, Ventura M.

Cell Mol Life Sci. 2018 Jan;75(1):103-118. doi: 10.1007/s00018-017-2672-0. Epub 2017 Oct 5. Review.

PMID:
28983638
14.

Untangling the cecal microbiota of feral chickens by culturomic and metagenomic analyses.

Ferrario C, Alessandri G, Mancabelli L, Gering E, Mangifesta M, Milani C, Lugli GA, Viappiani A, Duranti S, Turroni F, Ossiprandi MC, Hiyashi R, Mackie R, van Sinderen D, Ventura M.

Environ Microbiol. 2017 Nov;19(11):4771-4783. doi: 10.1111/1462-2920.13943. Epub 2017 Oct 13.

PMID:
28967204
15.

How to Feed the Mammalian Gut Microbiota: Bacterial and Metabolic Modulation by Dietary Fibers.

Ferrario C, Statello R, Carnevali L, Mancabelli L, Milani C, Mangifesta M, Duranti S, Lugli GA, Jimenez B, Lodge S, Viappiani A, Alessandri G, Dall'Asta M, Del Rio D, Sgoifo A, van Sinderen D, Ventura M, Turroni F.

Front Microbiol. 2017 Sep 12;8:1749. doi: 10.3389/fmicb.2017.01749. eCollection 2017.

16.

Gut microbiota composition is associated with polypharmacy in elderly hospitalized patients.

Ticinesi A, Milani C, Lauretani F, Nouvenne A, Mancabelli L, Lugli GA, Turroni F, Duranti S, Mangifesta M, Viappiani A, Ferrario C, Maggio M, Ventura M, Meschi T.

Sci Rep. 2017 Sep 11;7(1):11102. doi: 10.1038/s41598-017-10734-y.

17.

Bifidobacterium vansinderenii sp. nov., isolated from faeces of emperor tamarin (Saguinus imperator).

Duranti S, Mangifesta M, Lugli GA, Turroni F, Anzalone R, Milani C, Mancabelli L, Ossiprandi MC, Ventura M.

Int J Syst Evol Microbiol. 2017 Oct;67(10):3987-3995. doi: 10.1099/ijsem.0.002243. Epub 2017 Sep 12.

PMID:
28893355
18.

Unveiling the gut microbiota composition and functionality associated with constipation through metagenomic analyses.

Mancabelli L, Milani C, Lugli GA, Turroni F, Mangifesta M, Viappiani A, Ticinesi A, Nouvenne A, Meschi T, van Sinderen D, Ventura M.

Sci Rep. 2017 Aug 29;7(1):9879. doi: 10.1038/s41598-017-10663-w.

19.

Unveiling bifidobacterial biogeography across the mammalian branch of the tree of life.

Milani C, Mangifesta M, Mancabelli L, Lugli GA, James K, Duranti S, Turroni F, Ferrario C, Ossiprandi MC, van Sinderen D, Ventura M.

ISME J. 2017 Dec;11(12):2834-2847. doi: 10.1038/ismej.2017.138. Epub 2017 Aug 22.

20.

Comparative genomic and phylogenomic analyses of the Bifidobacteriaceae family.

Lugli GA, Milani C, Turroni F, Duranti S, Mancabelli L, Mangifesta M, Ferrario C, Modesto M, Mattarelli P, Jiří K, van Sinderen D, Ventura M.

BMC Genomics. 2017 Aug 1;18(1):568. doi: 10.1186/s12864-017-3955-4.

21.

The Sortase-Dependent Fimbriome of the Genus Bifidobacterium: Extracellular Structures with Potential To Modulate Microbe-Host Dialogue.

Milani C, Mangifesta M, Mancabelli L, Lugli GA, Mancino W, Viappiani A, Faccini A, van Sinderen D, Ventura M, Turroni F.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e01295-17. doi: 10.1128/AEM.01295-17. Print 2017 Oct 1.

22.

Maternal inheritance of bifidobacterial communities and bifidophages in infants through vertical transmission.

Duranti S, Lugli GA, Mancabelli L, Armanini F, Turroni F, James K, Ferretti P, Gorfer V, Ferrario C, Milani C, Mangifesta M, Anzalone R, Zolfo M, Viappiani A, Pasolli E, Bariletti I, Canto R, Clementi R, Cologna M, Crifò T, Cusumano G, Fedi S, Gottardi S, Innamorati C, Masè C, Postai D, Savoi D, Soffiati M, Tateo S, Pedrotti A, Segata N, van Sinderen D, Ventura M.

Microbiome. 2017 Jun 26;5(1):66. doi: 10.1186/s40168-017-0282-6.

23.

Obesity and microbiota: an example of an intricate relationship.

Duranti S, Ferrario C, van Sinderen D, Ventura M, Turroni F.

Genes Nutr. 2017 Jun 15;12:18. doi: 10.1186/s12263-017-0566-2. eCollection 2017. Review.

24.

Next generation sequencing-based multigene panel for high throughput detection of food-borne pathogens.

Ferrario C, Lugli GA, Ossiprandi MC, Turroni F, Milani C, Duranti S, Mancabelli L, Mangifesta M, Alessandri G, van Sinderen D, Ventura M.

Int J Food Microbiol. 2017 Sep 1;256:20-29. doi: 10.1016/j.ijfoodmicro.2017.05.001. Epub 2017 May 3.

PMID:
28578266
25.

Erratum to: Ancient bacteria of the Ötzi's microbiome: a genomic tale from the Copper Age.

Lugli GA, Milani C, Mancabelli L, Turroni F, Ferrario C, Duranti S, van Sinderen D, Ventura M.

Microbiome. 2017 Feb 17;5(1):23. doi: 10.1186/s40168-017-0243-0. No abstract available.

26.

Meta-analysis of the human gut microbiome from urbanized and pre-agricultural populations.

Mancabelli L, Milani C, Lugli GA, Turroni F, Ferrario C, van Sinderen D, Ventura M.

Environ Microbiol. 2017 Apr;19(4):1379-1390. doi: 10.1111/1462-2920.13692. Epub 2017 Feb 28. Review.

PMID:
28198087
27.

Editorial: Bifidobacteria and Their Role in the Human Gut Microbiota.

Turroni F, Berry D, Ventura M.

Front Microbiol. 2017 Jan 6;7:2148. doi: 10.3389/fmicb.2016.02148. eCollection 2016. No abstract available.

28.

Ancient bacteria of the Ötzi's microbiome: a genomic tale from the Copper Age.

Lugli GA, Milani C, Mancabelli L, Turroni F, Ferrario C, Duranti S, van Sinderen D, Ventura M.

Microbiome. 2017 Jan 17;5(1):5. doi: 10.1186/s40168-016-0221-y. Erratum in: Microbiome. 2017 Feb 17;5(1):23.

29.

Prevalence of Antibiotic Resistance Genes among Human Gut-Derived Bifidobacteria.

Duranti S, Lugli GA, Mancabelli L, Turroni F, Milani C, Mangifesta M, Ferrario C, Anzalone R, Viappiani A, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2017 Jan 17;83(3). pii: e02894-16. doi: 10.1128/AEM.02894-16. Print 2017 Feb 1.

30.

Elucidating the gut microbiome of ulcerative colitis: bifidobacteria as novel microbial biomarkers.

Duranti S, Gaiani F, Mancabelli L, Milani C, Grandi A, Bolchi A, Santoni A, Lugli GA, Ferrario C, Mangifesta M, Viappiani A, Bertoni S, Vivo V, Serafini F, Barbaro MR, Fugazza A, Barbara G, Gioiosa L, Palanza P, Cantoni AM, de'Angelis GL, Barocelli E, de'Angelis N, van Sinderen D, Ventura M, Turroni F.

FEMS Microbiol Ecol. 2016 Dec;92(12). pii: fiw191. doi: 10.1093/femsec/fiw191. Epub 2016 Sep 7.

PMID:
27604252
31.

Stress Physiology of Lactic Acid Bacteria.

Papadimitriou K, Alegría Á, Bron PA, de Angelis M, Gobbetti M, Kleerebezem M, Lemos JA, Linares DM, Ross P, Stanton C, Turroni F, van Sinderen D, Varmanen P, Ventura M, Zúñiga M, Tsakalidou E, Kok J.

Microbiol Mol Biol Rev. 2016 Jul 27;80(3):837-90. doi: 10.1128/MMBR.00076-15. Print 2016 Sep. Review.

32.

Gut microbiota composition and Clostridium difficile infection in hospitalized elderly individuals: a metagenomic study.

Milani C, Ticinesi A, Gerritsen J, Nouvenne A, Lugli GA, Mancabelli L, Turroni F, Duranti S, Mangifesta M, Viappiani A, Ferrario C, Maggio M, Lauretani F, De Vos W, van Sinderen D, Meschi T, Ventura M.

Sci Rep. 2016 May 11;6:25945. doi: 10.1038/srep25945.

33.

The human gut microbiota and its interactive connections to diet.

Milani C, Ferrario C, Turroni F, Duranti S, Mangifesta M, van Sinderen D, Ventura M.

J Hum Nutr Diet. 2016 Oct;29(5):539-46. doi: 10.1111/jhn.12371. Epub 2016 May 10.

PMID:
27161433
34.

Insights into the biodiversity of the gut microbiota of broiler chickens.

Mancabelli L, Ferrario C, Milani C, Mangifesta M, Turroni F, Duranti S, Lugli GA, Viappiani A, Ossiprandi MC, van Sinderen D, Ventura M.

Environ Microbiol. 2016 Dec;18(12):4727-4738. doi: 10.1111/1462-2920.13363. Epub 2016 Jun 27.

PMID:
27129897
35.

Evaluation of genetic diversity among strains of the human gut commensal Bifidobacterium adolescentis.

Duranti S, Milani C, Lugli GA, Mancabelli L, Turroni F, Ferrario C, Mangifesta M, Viappiani A, Sánchez B, Margolles A, van Sinderen D, Ventura M.

Sci Rep. 2016 Apr 1;6:23971. doi: 10.1038/srep23971.

36.

Modulation of the eps-ome transcription of bifidobacteria through simulation of human intestinal environment.

Ferrario C, Milani C, Mancabelli L, Lugli GA, Duranti S, Mangifesta M, Viappiani A, Turroni F, Margolles A, Ruas-Madiedo P, van Sinderen D, Ventura M.

FEMS Microbiol Ecol. 2016 Apr;92(4):fiw056. doi: 10.1093/femsec/fiw056. Epub 2016 Mar 8.

PMID:
26960391
37.

Deciphering bifidobacterial-mediated metabolic interactions and their impact on gut microbiota by a multi-omics approach.

Turroni F, Milani C, Duranti S, Mancabelli L, Mangifesta M, Viappiani A, Lugli GA, Ferrario C, Gioiosa L, Ferrarini A, Li J, Palanza P, Delledonne M, van Sinderen D, Ventura M.

ISME J. 2016 Jul;10(7):1656-68. doi: 10.1038/ismej.2015.236. Epub 2016 Feb 9.

38.

Allergic Patients with Long-Term Asthma Display Low Levels of Bifidobacterium adolescentis.

Hevia A, Milani C, López P, Donado CD, Cuervo A, González S, Suárez A, Turroni F, Gueimonde M, Ventura M, Sánchez B, Margolles A.

PLoS One. 2016 Feb 3;11(2):e0147809. doi: 10.1371/journal.pone.0147809. eCollection 2016.

39.

Exploring Amino Acid Auxotrophy in Bifidobacterium bifidum PRL2010.

Ferrario C, Duranti S, Milani C, Mancabelli L, Lugli GA, Turroni F, Mangifesta M, Viappiani A, Ossiprandi MC, van Sinderen D, Ventura M.

Front Microbiol. 2015 Nov 24;6:1331. doi: 10.3389/fmicb.2015.01331. eCollection 2015.

40.

Prophages of the genus Bifidobacterium as modulating agents of the infant gut microbiota.

Lugli GA, Milani C, Turroni F, Tremblay D, Ferrario C, Mancabelli L, Duranti S, Ward DV, Ossiprandi MC, Moineau S, van Sinderen D, Ventura M.

Environ Microbiol. 2016 Jul;18(7):2196-213. doi: 10.1111/1462-2920.13154. Epub 2016 Jan 18.

PMID:
26627180
41.

Genomics of the Genus Bifidobacterium Reveals Species-Specific Adaptation to the Glycan-Rich Gut Environment.

Milani C, Turroni F, Duranti S, Lugli GA, Mancabelli L, Ferrario C, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2015 Nov 20;82(4):980-991. doi: 10.1128/AEM.03500-15. Print 2016 Feb 15. Review.

42.

Bifidobacteria exhibit social behavior through carbohydrate resource sharing in the gut.

Milani C, Lugli GA, Duranti S, Turroni F, Mancabelli L, Ferrario C, Mangifesta M, Hevia A, Viappiani A, Scholz M, Arioli S, Sanchez B, Lane J, Ward DV, Hickey R, Mora D, Segata N, Margolles A, van Sinderen D, Ventura M.

Sci Rep. 2015 Oct 28;5:15782. doi: 10.1038/srep15782.

43.

Multimorbidity in elderly hospitalised patients and risk of Clostridium difficile infection: a retrospective study with the Cumulative Illness Rating Scale (CIRS).

Ticinesi A, Nouvenne A, Folesani G, Prati B, Morelli I, Guida L, Turroni F, Ventura M, Lauretani F, Maggio M, Meschi T.

BMJ Open. 2015 Oct 26;5(10):e009316. doi: 10.1136/bmjopen-2015-009316.

44.

Glycan cross-feeding activities between bifidobacteria under in vitro conditions.

Turroni F, Özcan E, Milani C, Mancabelli L, Viappiani A, van Sinderen D, Sela DA, Ventura M.

Front Microbiol. 2015 Sep 24;6:1030. doi: 10.3389/fmicb.2015.01030. eCollection 2015.

45.

Insights into teichoic acid biosynthesis by Bifidobacterium bifidum PRL2010.

Colagiorgi A, Turroni F, Mancabelli L, Serafini F, Secchi A, van Sinderen D, Ventura M.

FEMS Microbiol Lett. 2015 Sep;362(17):fnv141. doi: 10.1093/femsle/fnv141. Epub 2015 Aug 21.

PMID:
26296705
46.

Exploring Vertical Transmission of Bifidobacteria from Mother to Child.

Milani C, Mancabelli L, Lugli GA, Duranti S, Turroni F, Ferrario C, Mangifesta M, Viappiani A, Ferretti P, Gorfer V, Tett A, Segata N, van Sinderen D, Ventura M.

Appl Environ Microbiol. 2015 Oct;81(20):7078-87. doi: 10.1128/AEM.02037-15. Epub 2015 Jul 31.

47.

Occurrence and Diversity of CRISPR-Cas Systems in the Genus Bifidobacterium.

Briner AE, Lugli GA, Milani C, Duranti S, Turroni F, Gueimonde M, Margolles A, van Sinderen D, Ventura M, Barrangou R.

PLoS One. 2015 Jul 31;10(7):e0133661. doi: 10.1371/journal.pone.0133661. eCollection 2015.

48.

Evidence for cholesterol-lowering activity by Bifidobacterium bifidum PRL2010 through gut microbiota modulation.

Zanotti I, Turroni F, Piemontese A, Mancabelli L, Milani C, Viappiani A, Prevedini G, Sanchez B, Margolles A, Elviri L, Franco B, van Sinderen D, Ventura M.

Appl Microbiol Biotechnol. 2015 Aug;99(16):6813-29. doi: 10.1007/s00253-015-6564-7. Epub 2015 Apr 12.

PMID:
25863679
49.

A genome-based identification approach for members of the genus Bifidobacterium.

Ferrario C, Milani C, Mancabelli L, Lugli GA, Turroni F, Duranti S, Mangifesta M, Viappiani A, Sinderen Dv, Ventura M.

FEMS Microbiol Ecol. 2015 Mar;91(3). pii: fiv009. doi: 10.1093/femsec/fiv009. Epub 2015 Jan 27.

PMID:
25764568
50.

Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum.

Duranti S, Milani C, Lugli GA, Turroni F, Mancabelli L, Sanchez B, Ferrario C, Viappiani A, Mangifesta M, Mancino W, Gueimonde M, Margolles A, van Sinderen D, Ventura M.

Environ Microbiol. 2015 Jul;17(7):2515-31. doi: 10.1111/1462-2920.12743. Epub 2015 Feb 14.

PMID:
25523018

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