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Items: 18

1.

Comparative Analysis of B-Cell Receptor Repertoires Induced by Live Yellow Fever Vaccine in Young and Middle-Age Donors.

Davydov AN, Obraztsova AS, Lebedin MY, Turchaninova MA, Staroverov DB, Merzlyak EM, Sharonov GV, Kladova O, Shugay M, Britanova OV, Chudakov DM.

Front Immunol. 2018 Oct 9;9:2309. doi: 10.3389/fimmu.2018.02309. eCollection 2018.

2.

Reconstructing Antibody Repertoires from Error-Prone Immunosequencing Reads.

Shlemov A, Bankevich S, Bzikadze A, Turchaninova MA, Safonova Y, Pevzner PA.

J Immunol. 2017 Nov 1;199(9):3369-3380. doi: 10.4049/jimmunol.1700485. Epub 2017 Oct 4.

3.

Application of nonsense-mediated primer exclusion (NOPE) for preparation of unique molecular barcoded libraries.

Shagin DA, Turchaninova MA, Shagina IA, Shugay M, Zaretsky AR, Zueva OI, Bolotin DA, Lukyanov S, Chudakov DM.

BMC Genomics. 2017 Jun 5;18(1):440. doi: 10.1186/s12864-017-3815-2.

4.

High-quality full-length immunoglobulin profiling with unique molecular barcoding.

Turchaninova MA, Davydov A, Britanova OV, Shugay M, Bikos V, Egorov ES, Kirgizova VI, Merzlyak EM, Staroverov DB, Bolotin DA, Mamedov IZ, Izraelson M, Logacheva MD, Kladova O, Plevova K, Pospisilova S, Chudakov DM.

Nat Protoc. 2016 Sep;11(9):1599-616. doi: 10.1038/nprot.2016.093. Epub 2016 Aug 4.

PMID:
27490633
5.

Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians.

Britanova OV, Shugay M, Merzlyak EM, Staroverov DB, Putintseva EV, Turchaninova MA, Mamedov IZ, Pogorelyy MV, Bolotin DA, Izraelson M, Davydov AN, Egorov ES, Kasatskaya SA, Rebrikov DV, Lukyanov S, Chudakov DM.

J Immunol. 2016 Jun 15;196(12):5005-13. doi: 10.4049/jimmunol.1600005. Epub 2016 May 13.

6.

VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires.

Shugay M, Bagaev DV, Turchaninova MA, Bolotin DA, Britanova OV, Putintseva EV, Pogorelyy MV, Nazarov VI, Zvyagin IV, Kirgizova VI, Kirgizov KI, Skorobogatova EV, Chudakov DM.

PLoS Comput Biol. 2015 Nov 25;11(11):e1004503. doi: 10.1371/journal.pcbi.1004503. eCollection 2015 Nov.

7.

Towards error-free profiling of immune repertoires.

Shugay M, Britanova OV, Merzlyak EM, Turchaninova MA, Mamedov IZ, Tuganbaev TR, Bolotin DA, Staroverov DB, Putintseva EV, Plevova K, Linnemann C, Shagin D, Pospisilova S, Lukyanov S, Schumacher TN, Chudakov DM.

Nat Methods. 2014 Jun;11(6):653-5. doi: 10.1038/nmeth.2960. Epub 2014 May 4.

PMID:
24793455
8.

Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling.

Britanova OV, Putintseva EV, Shugay M, Merzlyak EM, Turchaninova MA, Staroverov DB, Bolotin DA, Lukyanov S, Bogdanova EA, Mamedov IZ, Lebedev YB, Chudakov DM.

J Immunol. 2014 Mar 15;192(6):2689-98. doi: 10.4049/jimmunol.1302064. Epub 2014 Feb 7.

9.

Mother and child T cell receptor repertoires: deep profiling study.

Putintseva EV, Britanova OV, Staroverov DB, Merzlyak EM, Turchaninova MA, Shugay M, Bolotin DA, Pogorelyy MV, Mamedov IZ, Bobrynina V, Maschan M, Lebedev YB, Chudakov DM.

Front Immunol. 2013 Dec 25;4:463. doi: 10.3389/fimmu.2013.00463. eCollection 2013.

10.

Preparing unbiased T-cell receptor and antibody cDNA libraries for the deep next generation sequencing profiling.

Mamedov IZ, Britanova OV, Zvyagin IV, Turchaninova MA, Bolotin DA, Putintseva EV, Lebedev YB, Chudakov DM.

Front Immunol. 2013 Dec 23;4:456. doi: 10.3389/fimmu.2013.00456. eCollection 2013.

11.

High-throughput identification of antigen-specific TCRs by TCR gene capture.

Linnemann C, Heemskerk B, Kvistborg P, Kluin RJ, Bolotin DA, Chen X, Bresser K, Nieuwland M, Schotte R, Michels S, Gomez-Eerland R, Jahn L, Hombrink P, Legrand N, Shu CJ, Mamedov IZ, Velds A, Blank CU, Haanen JB, Turchaninova MA, Kerkhoven RM, Spits H, Hadrup SR, Heemskerk MH, Blankenstein T, Chudakov DM, Bendle GM, Schumacher TN.

Nat Med. 2013 Nov;19(11):1534-41. doi: 10.1038/nm.3359. Epub 2013 Oct 13.

PMID:
24121928
12.

MiTCR: software for T-cell receptor sequencing data analysis.

Bolotin DA, Shugay M, Mamedov IZ, Putintseva EV, Turchaninova MA, Zvyagin IV, Britanova OV, Chudakov DM.

Nat Methods. 2013 Sep;10(9):813-4. doi: 10.1038/nmeth.2555. Epub 2013 Jul 28. No abstract available.

PMID:
23892897
13.

Pairing of T-cell receptor chains via emulsion PCR.

Turchaninova MA, Britanova OV, Bolotin DA, Shugay M, Putintseva EV, Staroverov DB, Sharonov G, Shcherbo D, Zvyagin IV, Mamedov IZ, Linnemann C, Schumacher TN, Chudakov DM.

Eur J Immunol. 2013 Sep;43(9):2507-15. doi: 10.1002/eji.201343453. Epub 2013 Jun 26.

14.

Next generation sequencing for TCR repertoire profiling: platform-specific features and correction algorithms.

Bolotin DA, Mamedov IZ, Britanova OV, Zvyagin IV, Shagin D, Ustyugova SV, Turchaninova MA, Lukyanov S, Lebedev YB, Chudakov DM.

Eur J Immunol. 2012 Nov;42(11):3073-83. doi: 10.1002/eji.201242517. Epub 2012 Sep 24.

15.

First autologous hematopoietic SCT for ankylosing spondylitis: a case report and clues to understanding the therapy.

Britanova OV, Bochkova AG, Staroverov DB, Fedorenko DA, Bolotin DA, Mamedov IZ, Turchaninova MA, Putintseva EV, Kotlobay AA, Lukyanov S, Novik AA, Lebedev YB, Chudakov DM.

Bone Marrow Transplant. 2012 Nov;47(11):1479-81. doi: 10.1038/bmt.2012.44. Epub 2012 Mar 12. No abstract available.

PMID:
22410749
16.

[Characterization of circulating RNA in plasma as potential tool for breast cancer diagnostics].

Turchaninova MA, Meshcheriakov AA, Rakhmankulova ZP, Rebrikov DV.

Bioorg Khim. 2011 May-Jun;37(3):393-8. Russian.

PMID:
21899055
17.

Quantitative tracking of T cell clones after haematopoietic stem cell transplantation.

Mamedov IZ, Britanova OV, Bolotin DA, Chkalina AV, Staroverov DB, Zvyagin IV, Kotlobay AA, Turchaninova MA, Fedorenko DA, Novik AA, Sharonov GV, Lukyanov S, Chudakov DM, Lebedev YB.

EMBO Mol Med. 2011 Apr;3(4):201-7. doi: 10.1002/emmm.201100129. Epub 2011 Mar 4.

18.

[Profile of RNA cytokines in blood plasma under conditions of normal physiological state of human body].

Turchaninova MA, Rebrikov DV.

Mol Gen Mikrobiol Virusol. 2009;(2):22-4. Russian.

PMID:
19517806

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