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Items: 28

1.

Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta.

Moeller FU, Webster NS, Herbold CW, Behnam F, Domman D, Albertsen M, Mooshammer M, Markert S, Turaev D, Becher D, Rattei T, Schweder T, Richter A, Watzka M, Nielsen PH, Wagner M.

Environ Microbiol. 2019 Jul 4. doi: 10.1111/1462-2920.14732. [Epub ahead of print]

PMID:
31271506
2.

Remarkable charged particle dynamics near magnetic field null lines.

Neishtadt A, Artemyev A, Turaev D.

Chaos. 2019 May;29(5):051104. doi: 10.1063/1.5097838.

3.

The Iceman's Last Meal Consisted of Fat, Wild Meat, and Cereals.

Maixner F, Turaev D, Cazenave-Gassiot A, Janko M, Krause-Kyora B, Hoopmann MR, Kusebauch U, Sartain M, Guerriero G, O'Sullivan N, Teasdale M, Cipollini G, Paladin A, Mattiangeli V, Samadelli M, Tecchiati U, Putzer A, Palazoglu M, Meissen J, Lösch S, Rausch P, Baines JF, Kim BJ, An HJ, Gostner P, Egarter-Vigl E, Malfertheiner P, Keller A, Stark RW, Wenk M, Bishop D, Bradley DG, Fiehn O, Engstrand L, Moritz RL, Doble P, Franke A, Nebel A, Oeggl K, Rattei T, Grimm R, Zink A.

Curr Biol. 2018 Jul 23;28(14):2348-2355.e9. doi: 10.1016/j.cub.2018.05.067. Epub 2018 Jul 12.

4.

Reef invertebrate viromics: diversity, host specificity and functional capacity.

Laffy PW, Wood-Charlson EM, Turaev D, Jutz S, Pascelli C, Botté ES, Bell SC, Peirce TE, Weynberg KD, van Oppen MJH, Rattei T, Webster NS.

Environ Microbiol. 2018 Jun;20(6):2125-2141. doi: 10.1111/1462-2920.14110. Epub 2018 Apr 30.

PMID:
29575552
5.

Equilibration of energy in slow-fast systems.

Shah K, Turaev D, Gelfreich V, Rom-Kedar V.

Proc Natl Acad Sci U S A. 2017 Dec 5;114(49):E10514-E10523. doi: 10.1073/pnas.1706341114. Epub 2017 Nov 28.

6.

Coral-associated viral communities show high levels of diversity and host auxiliary functions.

Weynberg KD, Laffy PW, Wood-Charlson EM, Turaev D, Rattei T, Webster NS, van Oppen MJH.

PeerJ. 2017 Nov 17;5:e4054. doi: 10.7717/peerj.4054. eCollection 2017.

7.

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC.

Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2.

8.

Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets.

Walker A, Pfitzner B, Harir M, Schaubeck M, Calasan J, Heinzmann SS, Turaev D, Rattei T, Endesfelder D, Castell WZ, Haller D, Schmid M, Hartmann A, Schmitt-Kopplin P.

Sci Rep. 2017 Sep 8;7(1):11047. doi: 10.1038/s41598-017-10369-z.

9.

Unraveling the microbial processes of black band disease in corals through integrated genomics.

Sato Y, Ling EY, Turaev D, Laffy P, Weynberg KD, Rattei T, Willis BL, Bourne DG.

Sci Rep. 2017 Jan 17;7:40455. doi: 10.1038/srep40455.

10.

HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts.

Laffy PW, Wood-Charlson EM, Turaev D, Weynberg KD, Botté ES, van Oppen MJ, Webster NS, Rattei T.

Front Microbiol. 2016 Jun 9;7:822. doi: 10.3389/fmicb.2016.00822. eCollection 2016.

11.

Exponential energy growth due to slow parameter oscillations in quantum mechanical systems.

Turaev D.

Phys Rev E. 2016 May;93(5):050203. doi: 10.1103/PhysRevE.93.050203. Epub 2016 May 26.

12.

Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies.

Güllert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B, Alawi M, Rattei T, Daniel R, Schmitz RA, Grundhoff A, Streit WR.

Biotechnol Biofuels. 2016 Jun 7;9:121. doi: 10.1186/s13068-016-0534-x. eCollection 2016.

13.

High definition for systems biology of microbial communities: metagenomics gets genome-centric and strain-resolved.

Turaev D, Rattei T.

Curr Opin Biotechnol. 2016 Jun;39:174-181. doi: 10.1016/j.copbio.2016.04.011. Epub 2016 Apr 23. Review.

PMID:
27115497
14.

The 5300-year-old Helicobacter pylori genome of the Iceman.

Maixner F, Krause-Kyora B, Turaev D, Herbig A, Hoopmann MR, Hallows JL, Kusebauch U, Vigl EE, Malfertheiner P, Megraud F, O'Sullivan N, Cipollini G, Coia V, Samadelli M, Engstrand L, Linz B, Moritz RL, Grimm R, Krause J, Nebel A, Moodley Y, Rattei T, Zink A.

Science. 2016 Jan 8;351(6269):162-165. doi: 10.1126/science.aad2545.

15.

Leaky Fermi accelerators.

Shah K, Gelfreich V, Rom-Kedar V, Turaev D.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jun;91(6):062920. Epub 2015 Jun 30.

PMID:
26172785
16.

Exponential energy growth in adiabatically changing Hamiltonian systems.

Pereira T, Turaev D.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jan;91(1):010901. Epub 2015 Jan 9.

17.

A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed Asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes.

Ilmberger N, Güllert S, Dannenberg J, Rabausch U, Torres J, Wemheuer B, Alawi M, Poehlein A, Chow J, Turaev D, Rattei T, Schmeisser C, Salomon J, Olsen PB, Daniel R, Grundhoff A, Borchert MS, Streit WR.

PLoS One. 2014 Sep 10;9(9):e106707. doi: 10.1371/journal.pone.0106707. eCollection 2014.

18.

The evolutionary dynamics of protein-protein interaction networks inferred from the reconstruction of ancient networks.

Jin Y, Turaev D, Weinmaier T, Rattei T, Makse HA.

PLoS One. 2013;8(3):e58134. doi: 10.1371/journal.pone.0058134. Epub 2013 Mar 20.

19.

Fermi acceleration and adiabatic invariants for non-autonomous billiards.

Gelfreich V, Rom-Kedar V, Turaev D.

Chaos. 2012 Sep;22(3):033116.

PMID:
23020455
20.

Long-range interaction and synchronization of oscillating dissipative solitons.

Turaev D, Vladimirov AG, Zelik S.

Phys Rev Lett. 2012 Jun 29;108(26):263906. Epub 2012 Jun 28.

PMID:
23004983
21.

Billiards: a singular perturbation limit of smooth Hamiltonian flows.

Rom-Kedar V, Turaev D.

Chaos. 2012 Jun;22(2):026102. doi: 10.1063/1.4722010.

PMID:
22757561
22.

Robust exponential acceleration in time-dependent billiards.

Gelfreich V, Rom-Kedar V, Shah K, Turaev D.

Phys Rev Lett. 2011 Feb 18;106(7):074101. Epub 2011 Feb 17.

PMID:
21405517
23.

Exponential energy growth in a Fermi accelerator.

Shah K, Turaev D, Rom-Kedar V.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 May;81(5 Pt 2):056205. Epub 2010 May 17.

PMID:
20866305
24.

Spontaneous motion of cavity solitons induced by a delayed feedback.

Tlidi M, Vladimirov AG, Pieroux D, Turaev D.

Phys Rev Lett. 2009 Sep 4;103(10):103904. Epub 2009 Sep 3.

PMID:
19792313
25.

Chaotic soliton walk in periodically modulated media.

Turaev D, Radziunas M, Vladimirov AG.

Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jun;77(6 Pt 2):065201. Epub 2008 Jun 9.

PMID:
18643324
26.

Chaotic bound state of localized structures in the complex Ginzburg-Landau equation.

Turaev D, Vladimirov AG, Zelik S.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Apr;75(4 Pt 2):045601. Epub 2007 Apr 11.

PMID:
17500954
27.

Delay differential equations for mode-locked semiconductor lasers.

Vladimirov AG, Turaev D, Kozyreff G.

Opt Lett. 2004 Jun 1;29(11):1221-3.

PMID:
15209253
28.

Dynamical phenomena in systems with structurally unstable Poincare homoclinic orbits.

Gonchenko SV, Shil'nikov LP, Turaev DV.

Chaos. 1996 Mar;6(1):15-31.

PMID:
12780232

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