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CT Texture Analysis and Machine Learning Improve Post-ablation Prognostication in Patients with Adrenal Metastases: A Proof of Concept.

Daye D, Staziaki PV, Furtado VF, Tabari A, Fintelmann FJ, Frenk NE, Shyn P, Tuncali K, Silverman S, Arellano R, Gee MS, Uppot RN.

Cardiovasc Intervent Radiol. 2019 Sep 5. doi: 10.1007/s00270-019-02336-0. [Epub ahead of print]


Open Source Platform for Transperineal In-bore MRI-guided Targeted Prostate Biopsy.

Herz C, MacNeil K, Behringer PA, Tokuda J, Mehrtash A, Mousavi P, Kikinis R, Fennessy FM, Tempany CM, Tuncali K, Fedorov A.

IEEE Trans Biomed Eng. 2019 May 23. doi: 10.1109/TBME.2019.2918731. [Epub ahead of print]


Automatic Needle Segmentation and Localization in MRI With 3-D Convolutional Neural Networks: Application to MRI-Targeted Prostate Biopsy.

Mehrtash A, Ghafoorian M, Pernelle G, Ziaei A, Heslinga FG, Tuncali K, Fedorov A, Kikinis R, Tempany CM, Wells WM, Abolmaesumi P, Kapur T.

IEEE Trans Med Imaging. 2019 Apr;38(4):1026-1036. doi: 10.1109/TMI.2018.2876796. Epub 2018 Oct 18.


Evaluation of robot-assisted MRI-guided prostate biopsy: needle path analysis during clinical trials.

Moreira P, Patel N, Wartenberg M, Li G, Tuncali K, Heffter T, Burdette EC, Iordachita I, Fischer GS, Hata N, Tempany CM, Tokuda J.

Phys Med Biol. 2018 Oct 16;63(20):20NT02. doi: 10.1088/1361-6560/aae214.


Motion compensation for MRI-compatible patient-mounted needle guide device: estimation of targeting accuracy in MRI-guided kidney cryoablations.

Tokuda J, Chauvin L, Ninni B, Kato T, King F, Tuncali K, Hata N.

Phys Med Biol. 2018 Apr 13;63(8):085010. doi: 10.1088/1361-6560/aab736.


Enabling Technology for MRI-Guided Intervention.

Sedaghat F, Tuncali K.

Top Magn Reson Imaging. 2018 Feb;27(1):5-8. doi: 10.1097/RMR.0000000000000148. Review.


Percutaneous Image-Guided Cryoablation of Hepatic Tumors: Single-Center Experience With Intermediate to Long-Term Outcomes.

Glazer DI, Tatli S, Shyn PB, Vangel MG, Tuncali K, Silverman SG.

AJR Am J Roentgenol. 2017 Dec;209(6):1381-1389. doi: 10.2214/AJR.16.17582. Epub 2017 Sep 27.


Local Control and Survival after Image-Guided Percutaneous Ablation of Adrenal Metastases.

Frenk NE, Daye D, Tuncali K, Arellano RS, Shyn PB, Silverman SG, Fintelmann FJ, Uppot RN.

J Vasc Interv Radiol. 2018 Feb;29(2):276-284. doi: 10.1016/j.jvir.2017.07.026. Epub 2017 Sep 18.


Hepatobiliary phase MRI: impact on planning image-guided liver tumor ablations.

Shyn PB, O'Neill AC, Wiggins WF, Sainani NI, Tatli S, Tuncali K, Levesque VM, Silverman SG.

Abdom Radiol (NY). 2017 Aug;42(8):2168-2174. doi: 10.1007/s00261-017-1112-9.


Pathologic correlation of transperineal in-bore 3-Tesla magnetic resonance imaging-guided prostate biopsy samples with radical prostatectomy specimen.

Velez E, Fedorov A, Tuncali K, Olubiyi O, Allard CB, Kibel AS, Tempany CM.

Abdom Radiol (NY). 2017 Aug;42(8):2154-2159. doi: 10.1007/s00261-017-1102-y.


Breath-hold PET/CT-guided tumour ablation under general anaesthesia: accuracy of tumour image registration and projected ablation zone overlap.

Shyn PB, Tremblay-Paquet S, Palmer K, Tatli S, Tuncali K, Olubiyi OI, Hata N, Silverman SG.

Clin Radiol. 2017 Mar;72(3):223-229. doi: 10.1016/j.crad.2016.10.017. Epub 2016 Nov 23.


Percutaneous Image-Guided Cryoablation of Head and Neck Tumors for Local Control, Preservation of Functional Status, and Pain Relief.

Guenette JP, Tuncali K, Himes N, Shyn PB, Lee TC.

AJR Am J Roentgenol. 2017 Feb;208(2):453-458. doi: 10.2214/AJR.16.16446. Epub 2016 Nov 15.


Spine Cryoablation: A Multimodality Image-Guided Approach for Tumors Adjacent to Major Neural Elements.

Guenette JP, Tuncali K, Himes N, Tatli S, Lee TC.

AJNR Am J Neuroradiol. 2016 Dec;37(12):2396-2399. Epub 2016 Sep 8.


Model-based optimal planning of hepatic radiofrequency ablation.

Chen Q, Müftü S, Meral FC, Tuncali K, Akçakaya M.

Math Med Biol. 2017 Sep 1;34(3):415-431. doi: 10.1093/imammb/dqw011.


Characterization of gradient echo signal decays in healthy and cancerous prostate at 3T improves with a Gaussian augmentation of the mono-exponential (GAME) model.

Ciris PA, Balasubramanian M, Seethamraju RT, Tokuda J, Scalera J, Penzkofer T, Fennessy FM, Tempany-Afdhal CM, Tuncali K, Mulkern RV.

NMR Biomed. 2016 Jul;29(7):999-1009. doi: 10.1002/nbm.3556. Epub 2016 May 31.


Segmented diffusion-weighted imaging of the prostate: Application to transperineal in-bore 3T MR image-guided targeted biopsy.

Fedorov A, Tuncali K, Panych LP, Fairhurst J, Hassanzadeh E, Seethamraju RT, Tempany CM, Maier SE.

Magn Reson Imaging. 2016 Oct;34(8):1146-54. doi: 10.1016/j.mri.2016.05.012. Epub 2016 May 27.


Incidence and clinical sequelae of portal and hepatic venous thrombosis following percutaneous cryoablation of liver tumors.

Sainani NI, Silverman SG, Tuna IS, Aghayev A, Shyn PB, Tuncali K, Kadiyala V, Tatli S.

Abdom Radiol (NY). 2016 May;41(5):970-7. doi: 10.1007/s00261-015-0626-2.


Open-Source Platform for Prostate Motion Tracking During in-Bore Targeted MRI-Guided Biopsy.

Behringer PA, Herz C, Penzkofer T, Tuncali K, Tempany CM, Fedorov A.

Clin Image Based Proced. 2016;9401:122-129. Epub 2016 Mar 23.


Body-mounted robotic instrument guide for image-guided cryotherapy of renal cancer.

Hata N, Song SE, Olubiyi O, Arimitsu Y, Fujimoto K, Kato T, Tuncali K, Tani S, Tokuda J.

Med Phys. 2016 Feb;43(2):843-53. doi: 10.1118/1.4939875.


Catecholamine Surge during Image-Guided Ablation of Adrenal Gland Metastases: Predictors, Consequences, and Recommendations for Management.

Fintelmann FJ, Tuncali K, Puchner S, Gervais DA, Thabet A, Shyn PB, Arellano RS, Tatli S, Mueller PR, Silverman SG, Uppot RN.

J Vasc Interv Radiol. 2016 Mar;27(3):395-402. doi: 10.1016/j.jvir.2015.11.034. Epub 2015 Dec 24.


Radiation dose during CT-guided percutaneous cryoablation of renal tumors: Effect of a dose reduction protocol.

Levesque VM, Shyn PB, Tuncali K, Tatli S, Nawfel RD, Olubiyi O, Silverman SG.

Eur J Radiol. 2015 Nov;84(11):2218-21. doi: 10.1016/j.ejrad.2015.07.021. Epub 2015 Jul 19.


Open-source image registration for MRI-TRUS fusion-guided prostate interventions.

Fedorov A, Khallaghi S, Sánchez CA, Lasso A, Fels S, Tuncali K, Sugar EN, Kapur T, Zhang C, Wells W, Nguyen PL, Abolmaesumi P, Tempany C.

Int J Comput Assist Radiol Surg. 2015 Jun;10(6):925-34. doi: 10.1007/s11548-015-1180-7. Epub 2015 Apr 7.


Single-Session CT-Guided Percutaneous Microwave Ablation of Bilateral Adrenal Gland Hyperplasia Due to Ectopic ACTH Syndrome.

Sarma A, Shyn PB, Vivian MA, Ng JM, Tuncali K, Lorch JH, Zaheer SN, Gordon MS, Silverman SG.

Cardiovasc Intervent Radiol. 2015 Oct;38(5):1335-8. doi: 10.1007/s00270-015-1056-9. Epub 2015 Mar 12.


3T MR-guided in-bore transperineal prostate biopsy: A comparison of robotic and manual needle-guidance templates.

Tilak G, Tuncali K, Song SE, Tokuda J, Olubiyi O, Fennessy F, Fedorov A, Penzkofer T, Tempany C, Hata N.

J Magn Reson Imaging. 2015 Jul;42(1):63-71. doi: 10.1002/jmri.24770. Epub 2014 Sep 27.


Transperineal in-bore 3-T MR imaging-guided prostate biopsy: a prospective clinical observational study.

Penzkofer T, Tuncali K, Fedorov A, Song SE, Tokuda J, Fennessy FM, Vangel MG, Kibel AS, Mulkern RV, Wells WM, Hata N, Tempany CM.

Radiology. 2015 Jan;274(1):170-80. doi: 10.1148/radiol.14140221. Epub 2014 Sep 15.


Variability in MRI vs. ultrasound measures of prostate volume and its impact on treatment recommendations for favorable-risk prostate cancer patients: a case series.

Murciano-Goroff YR, Wolfsberger LD, Parekh A, Fennessy FM, Tuncali K, Orio PF 3rd, Niedermayr TR, Suh WW, Devlin PM, Tempany CM, Sugar EH, O'Farrell DA, Steele G, O'Leary M, Buzurovic I, Damato AL, Cormack RA, Fedorov AY, Nguyen PL.

Radiat Oncol. 2014 Sep 9;9:200. doi: 10.1186/1748-717X-9-200.


Multi-slice-to-volume registration for MRI-guided transperineal prostate biopsy.

Xu H, Lasso A, Fedorov A, Tuncali K, Tempany C, Fichtinger G.

Int J Comput Assist Radiol Surg. 2015 May;10(5):563-72. doi: 10.1007/s11548-014-1108-7. Epub 2014 Sep 6.


Percutaneous cryoablation of hepatic tumors adjacent to the gallbladder: assessment of safety and effectiveness.

Fairchild AH, Tatli S, Dunne RM, Shyn PB, Tuncali K, Silverman SG.

J Vasc Interv Radiol. 2014 Sep;25(9):1449-55. doi: 10.1016/j.jvir.2014.04.023. Epub 2014 Jun 3.


CT-guided percutaneous cryoablation of central lung tumors.

Colak E, Tatlı S, Shyn PB, Tuncalı K, Silverman SG.

Diagn Interv Radiol. 2014 Jul-Aug;20(4):316-22. doi: 10.5152/dir.2014.13440.


Configurable automatic detection and registration of fiducial frames for device-to-image registration in MRI-guided prostate interventions.

Tokuda J, Song SE, Tuncali K, Tempany C, Hata N.

Med Image Comput Comput Assist Interv. 2013;16(Pt 3):355-62.


Automatic iceball segmentation with adapted shape priors for MRI-guided cryoablation.

Liu X, Tuncali K, Wells WM, Zientara GP.

J Magn Reson Imaging. 2015 Feb;41(2):517-24. doi: 10.1002/jmri.24531. Epub 2013 Dec 12.


Successful percutaneous radiologic management of renal cell carcinoma tumor seeding caused by percutaneous biopsy performed before ablation.

Sainani NI, Tatli S, Anthony SG, Shyn PB, Tuncali K, Silverman SG.

J Vasc Interv Radiol. 2013 Sep;24(9):1404-8. doi: 10.1016/j.jvir.2013.04.034.


Fully automatic 3D segmentation of iceball for image-guided cryoablation.

Liu X, Tuncali K, Wells WM 3rd, Morrison PR, Zientara GP.

Conf Proc IEEE Eng Med Biol Soc. 2012;2012:2327-30. doi: 10.1109/EMBC.2012.6346429.


Development and preliminary evaluation of a motorized needle guide template for MRI-guided targeted prostate biopsy.

Song SE, Tokuda J, Tuncali K, Tempany CM, Zhang E, Hata N.

IEEE Trans Biomed Eng. 2013 Nov;60(11):3019-27. doi: 10.1109/TBME.2013.2240301. Epub 2013 Jan 15.


A Bayesian nonrigid registration method to enhance intraoperative target definition in image-guided prostate procedures through uncertainty characterization.

Pursley J, Risholm P, Fedorov A, Tuncali K, Fennessy FM, Wells WM, Tempany CM, Cormack RA.

Med Phys. 2012 Nov;39(11):6858-67. doi: 10.1118/1.4760992.


MRI assessment of percutaneous ablation of liver tumors: value of subtraction images.

Tatli S, Acar M, Tuncali K, Sadow CA, Morrison PR, Silverman SG.

J Magn Reson Imaging. 2013 Feb;37(2):407-13. doi: 10.1002/jmri.23827. Epub 2012 Sep 28.


In-bore setup and software for 3T MRI-guided transperineal prostate biopsy.

Tokuda J, Tuncali K, Iordachita I, Song SE, Fedorov A, Oguro S, Lasso A, Fennessy FM, Tempany CM, Hata N.

Phys Med Biol. 2012 Sep 21;57(18):5823-40. doi: 10.1088/0031-9155/57/18/5823. Epub 2012 Sep 5.


Preclinical evaluation of an MRI-compatible pneumatic robot for angulated needle placement in transperineal prostate interventions.

Tokuda J, Song SE, Fischer GS, Iordachita II, Seifabadi R, Cho NB, Tuncali K, Fichtinger G, Tempany CM, Hata N.

Int J Comput Assist Radiol Surg. 2012 Nov;7(6):949-57. doi: 10.1007/s11548-012-0750-1. Epub 2012 Jun 8.


Image registration for targeted MRI-guided transperineal prostate biopsy.

Fedorov A, Tuncali K, Fennessy FM, Tokuda J, Hata N, Wells WM, Kikinis R, Tempany CM.

J Magn Reson Imaging. 2012 Oct;36(4):987-92. doi: 10.1002/jmri.23688. Epub 2012 May 29.



Risholm P, Fedorov A, Pursley J, Tuncali K, Cormack R, Wells WM.

Proc IEEE Int Symp Biomed Imaging. 2011 Jun 9;2011:553-556.


Estimated effective dose of CT-guided percutaneous cryoablation of liver tumors.

Park BK, Morrison PR, Tatli S, Govindarajulu U, Tuncali K, Judy P, Shyn PB, Silverman SG.

Eur J Radiol. 2012 Aug;81(8):1702-6. doi: 10.1016/j.ejrad.2011.04.067. Epub 2011 Jun 8.


Biochemical and hematologic changes after percutaneous radiofrequency ablation of liver tumors: experience in 83 procedures.

Cizginer S, Tatli S, Hurwitz S, Tuncali K, vanSonnenberg E, Silverman SG.

J Vasc Interv Radiol. 2011 Apr;22(4):471-8. doi: 10.1016/j.jvir.2010.12.033.


PET/CT-guided percutaneous biopsy of abdominal masses: initial experience.

Tatli S, Gerbaudo VH, Feeley CM, Shyn PB, Tuncali K, Silverman SG.

J Vasc Interv Radiol. 2011 Apr;22(4):507-14. doi: 10.1016/j.jvir.2010.12.035. Epub 2011 Mar 2.


PET/CT-guided radiofrequency and cryoablation: is tumor fluorine-18 fluorodeoxyglucose activity dissipated by thermal ablation?

Sainani NI, Shyn PB, Tatli S, Morrison PR, Tuncali K, Silverman SG.

J Vasc Interv Radiol. 2011 Mar;22(3):354-60. doi: 10.1016/j.jvir.2010.11.027.


Multimodality non-rigid image registration for planning, targeting and monitoring during CT-guided percutaneous liver tumor cryoablation.

Elhawary H, Oguro S, Tuncali K, Morrison PR, Tatli S, Shyn PB, Silverman SG, Hata N.

Acad Radiol. 2010 Nov;17(11):1334-44. doi: 10.1016/j.acra.2010.06.004.


Abdominal masses sampled at PET/CT-guided percutaneous biopsy: initial experience with registration of prior PET/CT images.

Tatli S, Gerbaudo VH, Mamede M, Tuncali K, Shyn PB, Silverman SG.

Radiology. 2010 Jul;256(1):305-11. doi: 10.1148/radiol.10090931.


Image registration of pre-procedural MRI and intra-procedural CT images to aid CT-guided percutaneous cryoablation of renal tumors.

Oguro S, Tuncali K, Elhawary H, Morrison PR, Hata N, Silverman SG.

Int J Comput Assist Radiol Surg. 2011 Jan;6(1):111-7. doi: 10.1007/s11548-010-0485-9. Epub 2010 May 25.


Percutaneous cryoablation techniques and clinical applications.

Tatli S, Acar M, Tuncali K, Morrison PR, Silverman S.

Diagn Interv Radiol. 2010 Mar;16(1):90-5. doi: 10.4261/1305-3825.DIR.1922-08.0. Epub 2009 Dec 8.


MR imaging-guided interventions in the genitourinary tract: an evolving concept.

Fennessy FM, Tuncali K, Morrison PR, Tempany CM.

Magn Reson Imaging Clin N Am. 2010 Feb;18(1):11-28. doi: 10.1016/j.mric.2009.09.002.


Imaging-guided percutaneous ablation of renal cell carcinoma: a primer of how we do it.

Uppot RN, Silverman SG, Zagoria RJ, Tuncali K, Childs DD, Gervais DA.

AJR Am J Roentgenol. 2009 Jun;192(6):1558-70. doi: 10.2214/AJR.09.2582. Review.


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