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Items: 19


Genome Sequence of Mariprofundus sp. Strain EBB-1, a Novel Marine Autotroph Isolated from an Iron-Sulfur Mineral.

Lopez A, Albino D, Beraki S, Broomell S, Canela R, Dingmon T, Estrada S, Fernandez M, Savalia P, Nealson K, Emerson D, Barco R, Tully BJ, Amend JP.

Microbiol Resour Announc. 2019 Sep 26;8(39). pii: e00995-19. doi: 10.1128/MRA.00995-19.


Potential for primary productivity in a globally-distributed bacterial phototroph.

Graham ED, Heidelberg JF, Tully BJ.

ISME J. 2018 Jun;12(7):1861-1866. doi: 10.1038/s41396-018-0091-3. Epub 2018 Mar 9.


The reconstruction of 2,631 draft metagenome-assembled genomes from the global oceans.

Tully BJ, Graham ED, Heidelberg JF.

Sci Data. 2018 Jan 16;5:170203. doi: 10.1038/sdata.2017.203.


Subject-specific multi-poroelastic model for exploring the risk factors associated with the early stages of Alzheimer's disease.

Guo L, Vardakis JC, Lassila T, Mitolo M, Ravikumar N, Chou D, Lange M, Sarrami-Foroushani A, Tully BJ, Taylor ZA, Varma S, Venneri A, Frangi AF, Ventikos Y.

Interface Focus. 2018 Feb 6;8(1):20170019. doi: 10.1098/rsfs.2017.0019. Epub 2017 Dec 15.


A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer.

Tully BJ, Wheat CG, Glazer BT, Huber JA.

ISME J. 2018 Jan;12(1):1-16. doi: 10.1038/ismej.2017.187. Epub 2017 Nov 3.


290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology.

Tully BJ, Sachdeva R, Graham ED, Heidelberg JF.

PeerJ. 2017 Jul 10;5:e3558. doi: 10.7717/peerj.3558. eCollection 2017.


Response to letter to the editor concerning "A fully dynamic multi-compartmental poroelastic system: Application to aqueductal stenosis".

Vardakis JC, Chou D, Guo L, Tully BJ, Ventikos Y.

J Biomech. 2017 Jun 14;58:243-246. doi: 10.1016/j.jbiomech.2017.04.032. Epub 2017 May 16. No abstract available.


BinSanity: unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation.

Graham ED, Heidelberg JF, Tully BJ.

PeerJ. 2017 Mar 8;5:e3035. doi: 10.7717/peerj.3035. eCollection 2017.


Potential Mechanisms for Microbial Energy Acquisition in Oxic Deep-Sea Sediments.

Tully BJ, Heidelberg JF.

Appl Environ Microbiol. 2016 Jun 30;82(14):4232-43. doi: 10.1128/AEM.01023-16. Print 2016 Jul 15.


A distinct and active bacterial community in cold oxygenated fluids circulating beneath the western flank of the Mid-Atlantic ridge.

Meyer JL, Jaekel U, Tully BJ, Glazer BT, Wheat CG, Lin HT, Hsieh CC, Cowen JP, Hulme SM, Girguis PR, Huber JA.

Sci Rep. 2016 Mar 3;6:22541. doi: 10.1038/srep22541.


Investigating cerebral oedema using poroelasticity.

Vardakis JC, Chou D, Tully BJ, Hung CC, Lee TH, Tsui PH, Ventikos Y.

Med Eng Phys. 2016 Jan;38(1):48-57. doi: 10.1016/j.medengphy.2015.09.006. Epub 2015 Dec 31.


A fully dynamic multi-compartmental poroelastic system: Application to aqueductal stenosis.

Chou D, Vardakis JC, Guo L, Tully BJ, Ventikos Y.

J Biomech. 2016 Jul 26;49(11):2306-2312. doi: 10.1016/j.jbiomech.2015.11.025. Epub 2015 Nov 28.


De novo sequences of Haloquadratum walsbyi from Lake Tyrrell, Australia, reveal a variable genomic landscape.

Tully BJ, Emerson JB, Andrade K, Brocks JJ, Allen EE, Banfield JF, Heidelberg KB.

Archaea. 2015 Feb 1;2015:875784. doi: 10.1155/2015/875784. eCollection 2015.


Comparative genomics of planktonic Flavobacteriaceae from the Gulf of Maine using metagenomic data.

Tully BJ, Sachdeva R, Heidelberg KB, Heidelberg JF.

Microbiome. 2014 Sep 5;2:34. doi: 10.1186/2049-2618-2-34. eCollection 2014.


Exploring the efficacy of endoscopic ventriculostomy for hydrocephalus treatment via a multicompartmental poroelastic model of CSF transport: a computational perspective.

Vardakis JC, Tully BJ, Ventikos Y.

PLoS One. 2013 Dec 31;8(12):e84577. doi: 10.1371/journal.pone.0084577. eCollection 2013.


Microbial communities associated with ferromanganese nodules and the surrounding sediments.

Tully BJ, Heidelberg JF.

Front Microbiol. 2013 Jun 25;4:161. doi: 10.3389/fmicb.2013.00161. eCollection 2013.


Prospects for the study of evolution in the deep biosphere.

Biddle JF, Sylvan JB, Brazelton WJ, Tully BJ, Edwards KJ, Moyer CL, Heidelberg JF, Nelson WC.

Front Microbiol. 2012 Jan 24;2:285. doi: 10.3389/fmicb.2011.00285. eCollection 2011.


Metagenomic analysis of a complex marine planktonic thaumarchaeal community from the Gulf of Maine.

Tully BJ, Nelson WC, Heidelberg JF.

Environ Microbiol. 2012 Jan;14(1):254-67. doi: 10.1111/j.1462-2920.2011.02628.x. Epub 2011 Nov 3.


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