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Items: 47

1.

Editorial overview: Energy biotechnology.

Collins CH, Tullman-Ercek D.

Curr Opin Biotechnol. 2019 Jun;57:vii-ix. doi: 10.1016/j.copbio.2019.06.001. No abstract available.

PMID:
31307625
2.

Cargo encapsulation in bacterial microcompartments: Methods and analysis.

Nichols TM, Kennedy NW, Tullman-Ercek D.

Methods Enzymol. 2019;617:155-186. doi: 10.1016/bs.mie.2018.12.009. Epub 2019 Feb 10.

3.

Systematic Engineering of a Protein Nanocage for High-Yield, Site-Specific Modification.

Brauer DD, Hartman EC, Bader DLV, Merz ZN, Tullman-Ercek D, Francis MB.

J Am Chem Soc. 2019 Mar 6;141(9):3875-3884. doi: 10.1021/jacs.8b10734. Epub 2019 Feb 20.

PMID:
30730722
4.

Developing Gram-negative bacteria for the secretion of heterologous proteins.

Burdette LA, Leach SA, Wong HT, Tullman-Ercek D.

Microb Cell Fact. 2018 Dec 20;17(1):196. doi: 10.1186/s12934-018-1041-5. Review.

5.

Experimental Evaluation of Coevolution in a Self-Assembling Particle.

Hartman EC, Lobba MJ, Favor AH, Robinson SA, Francis MB, Tullman-Ercek D.

Biochemistry. 2019 Mar 19;58(11):1527-1538. doi: 10.1021/acs.biochem.8b00948. Epub 2018 Dec 6.

PMID:
30418759
6.

An estimate is worth about a thousand experiments: using order-of-magnitude estimates to identify cellular engineering targets.

Metcalf KJ, Slininger Lee MF, Jakobson CM, Tullman-Ercek D.

Microb Cell Fact. 2018 Aug 30;17(1):135. doi: 10.1186/s12934-018-0979-7. Review.

7.

Type III Secretion Filaments as Templates for Metallic Nanostructure Synthesis.

Glasgow AA, Tullman-Ercek D.

Methods Mol Biol. 2018;1798:155-171. doi: 10.1007/978-1-4939-7893-9_12.

PMID:
29868958
8.

Spatially organizing biochemistry: choosing a strategy to translate synthetic biology to the factory.

Jakobson CM, Tullman-Ercek D, Mangan NM.

Sci Rep. 2018 May 29;8(1):8196. doi: 10.1038/s41598-018-26399-0.

9.

A Pseudomonas putida efflux pump acts on short-chain alcohols.

Basler G, Thompson M, Tullman-Ercek D, Keasling J.

Biotechnol Biofuels. 2018 May 11;11:136. doi: 10.1186/s13068-018-1133-9. eCollection 2018.

10.

Engineering expression and function of membrane proteins.

Kang MK, Tullman-Ercek D.

Methods. 2018 Sep 1;147:66-72. doi: 10.1016/j.ymeth.2018.04.014. Epub 2018 Apr 24. Review.

PMID:
29702227
11.

Quantitative characterization of all single amino acid variants of a viral capsid-based drug delivery vehicle.

Hartman EC, Jakobson CM, Favor AH, Lobba MJ, Álvarez-Benedicto E, Francis MB, Tullman-Ercek D.

Nat Commun. 2018 Apr 11;9(1):1385. doi: 10.1038/s41467-018-03783-y.

12.

Evolutionary engineering improves tolerance for medium-chain alcohols in Saccharomyces cerevisiae.

Davis López SA, Griffith DA, Choi B, Cate JHD, Tullman-Ercek D.

Biotechnol Biofuels. 2018 Apr 2;11:90. doi: 10.1186/s13068-018-1089-9. eCollection 2018.

13.

Evidence for Improved Encapsulated Pathway Behavior in a Bacterial Microcompartment through Shell Protein Engineering.

Slininger Lee MF, Jakobson CM, Tullman-Ercek D.

ACS Synth Biol. 2017 Oct 20;6(10):1880-1891. doi: 10.1021/acssynbio.7b00042. Epub 2017 Jun 21.

PMID:
28585808
14.

A systems-level model reveals that 1,2-Propanediol utilization microcompartments enhance pathway flux through intermediate sequestration.

Jakobson CM, Tullman-Ercek D, Slininger MF, Mangan NM.

PLoS Comput Biol. 2017 May 5;13(5):e1005525. doi: 10.1371/journal.pcbi.1005525. eCollection 2017 May.

15.

A Secretion-Amplification Role for Salmonella enterica Translocon Protein SipD.

Glasgow AA, Wong HT, Tullman-Ercek D.

ACS Synth Biol. 2017 Jun 16;6(6):1006-1015. doi: 10.1021/acssynbio.6b00335. Epub 2017 Mar 16.

PMID:
28301138
16.

De novo design of signal sequences to localize cargo to the 1,2-propanediol utilization microcompartment.

Jakobson CM, Slininger Lee MF, Tullman-Ercek D.

Protein Sci. 2017 May;26(5):1086-1092. doi: 10.1002/pro.3144. Epub 2017 Apr 17.

17.

Proteins adopt functionally active conformations after type III secretion.

Metcalf KJ, Bevington JL, Rosales SL, Burdette LA, Valdivia E, Tullman-Ercek D.

Microb Cell Fact. 2016 Dec 23;15(1):213. doi: 10.1186/s12934-016-0606-4.

18.

Correction to A Selection for Assembly Reveals That a Single Amino Acid Mutant of the Bacteriophage MS2 Coat Protein Forms a Smaller Virus-like Particle.

Asensio MA, Morella NM, Jakobson CM, Hartman EC, Glasgow JE, Sankaran B, Zwart PH, Tullman-Ercek D.

Nano Lett. 2016 Dec 14;16(12):8034. Epub 2016 Nov 10. No abstract available.

PMID:
27960505
19.

Use of Transcriptional Control to Increase Secretion of Heterologous Proteins in T3S Systems.

Metcalf KJ, Tullman-Ercek D.

Methods Mol Biol. 2017;1531:71-79.

PMID:
27837482
20.

A Selection for Assembly Reveals That a Single Amino Acid Mutant of the Bacteriophage MS2 Coat Protein Forms a Smaller Virus-like Particle.

Asensio MA, Morella NM, Jakobson CM, Hartman EC, Glasgow JE, Sankaran B, Zwart PH, Tullman-Ercek D.

Nano Lett. 2016 Sep 14;16(9):5944-50. doi: 10.1021/acs.nanolett.6b02948. Epub 2016 Aug 25. Erratum in: Nano Lett. 2016 Dec 14;16(12):8034.

21.

Tuning the Catalytic Activity of Subcellular Nanoreactors.

Jakobson CM, Chen Y, Slininger MF, Valdivia E, Kim EY, Tullman-Ercek D.

J Mol Biol. 2016 Jul 31;428(15):2989-96. doi: 10.1016/j.jmb.2016.07.006. Epub 2016 Jul 16.

PMID:
27427532
22.

Dumpster Diving in the Gut: Bacterial Microcompartments as Part of a Host-Associated Lifestyle.

Jakobson CM, Tullman-Ercek D.

PLoS Pathog. 2016 May 12;12(5):e1005558. doi: 10.1371/journal.ppat.1005558. eCollection 2016 May. Review. No abstract available.

23.

Type-III secretion filaments as scaffolds for inorganic nanostructures.

Azam A, Tullman-Ercek D.

J R Soc Interface. 2016 Jan;13(114):20150938. doi: 10.1098/rsif.2015.0938.

24.

Transcriptional feedback regulation of efflux protein expression for increased tolerance to and production of n-butanol.

Boyarskiy S, Davis López S, Kong N, Tullman-Ercek D.

Metab Eng. 2016 Jan;33:130-137. doi: 10.1016/j.ymben.2015.11.005. Epub 2015 Nov 30.

PMID:
26656942
25.

Localization of proteins to the 1,2-propanediol utilization microcompartment by non-native signal sequences is mediated by a common hydrophobic motif.

Jakobson CM, Kim EY, Slininger MF, Chien A, Tullman-Ercek D.

J Biol Chem. 2015 Oct 2;290(40):24519-33. doi: 10.1074/jbc.M115.651919. Epub 2015 Aug 17.

26.

Getting pumped: membrane efflux transporters for enhanced biomolecule production.

Boyarskiy S, Tullman-Ercek D.

Curr Opin Chem Biol. 2015 Oct;28:15-9. doi: 10.1016/j.cbpa.2015.05.019. Epub 2015 Jun 5. Review.

PMID:
26056950
27.

Type III secretion as a generalizable strategy for the production of full-length biopolymer-forming proteins.

Azam A, Li C, Metcalf KJ, Tullman-Ercek D.

Biotechnol Bioeng. 2016 Nov;113(11):2313-20. doi: 10.1002/bit.25656. Epub 2015 Jun 30.

PMID:
25993982
28.

Influence of Electrostatics on Small Molecule Flux through a Protein Nanoreactor.

Glasgow JE, Asensio MA, Jakobson CM, Francis MB, Tullman-Ercek D.

ACS Synth Biol. 2015 Sep 18;4(9):1011-9. doi: 10.1021/acssynbio.5b00037. Epub 2015 Apr 28.

PMID:
25893987
29.

Metabolism: 'channeling' Hans Krebs.

Tullman-Ercek D.

Nat Chem Biol. 2015 Mar;11(3):180-1. doi: 10.1038/nchembio.1758. No abstract available.

PMID:
25689335
30.

Engineering transcriptional regulation to control Pdu microcompartment formation.

Kim EY, Jakobson CM, Tullman-Ercek D.

PLoS One. 2014 Nov 26;9(11):e113814. doi: 10.1371/journal.pone.0113814. eCollection 2014.

31.

The effects of time, temperature, and pH on the stability of PDU bacterial microcompartments.

Kim EY, Slininger MF, Tullman-Ercek D.

Protein Sci. 2014 Oct;23(10):1434-41. doi: 10.1002/pro.2527. Epub 2014 Aug 12.

32.

Using transcriptional control to increase titers of secreted heterologous proteins by the type III secretion system.

Metcalf KJ, Finnerty C, Azam A, Valdivia E, Tullman-Ercek D.

Appl Environ Microbiol. 2014 Oct;80(19):5927-34. doi: 10.1128/AEM.01330-14. Epub 2014 Jul 18.

33.

Synthetic biologists spring into action at the 245th American Chemical Society National Meeting.

Glasgow JE, Tullman-Ercek D.

ACS Synth Biol. 2013 Jun 21;2(6):293-5. doi: 10.1021/sb400046t.

PMID:
24884108
34.

Production and applications of engineered viral capsids.

Glasgow J, Tullman-Ercek D.

Appl Microbiol Biotechnol. 2014 Jul;98(13):5847-58. doi: 10.1007/s00253-014-5787-3. Epub 2014 May 10. Review.

PMID:
24816622
35.

A rapid flow cytometry assay for the relative quantification of protein encapsulation into bacterial microcompartments.

Kim EY, Tullman-Ercek D.

Biotechnol J. 2014 Mar;9(3):348-54. doi: 10.1002/biot.201300391. Epub 2014 Jan 14.

PMID:
24323373
36.

An assay for the bacterial sweet spot.

Tullman-Ercek D.

Biotechnol J. 2013 Dec;8(12):1377-8. doi: 10.1002/biot.201300319. Epub 2013 Oct 4. No abstract available.

PMID:
24124082
37.

Enhancing tolerance to short-chain alcohols by engineering the Escherichia coli AcrB efflux pump to secrete the non-native substrate n-butanol.

Fisher MA, Boyarskiy S, Yamada MR, Kong N, Bauer S, Tullman-Ercek D.

ACS Synth Biol. 2014 Jan 17;3(1):30-40. doi: 10.1021/sb400065q. Epub 2013 Sep 13.

PMID:
23991711
38.

Addition of a carbohydrate-binding module enhances cellulase penetration into cellulose substrates.

Reyes-Ortiz V, Heins RA, Cheng G, Kim EY, Vernon BC, Elandt RB, Adams PD, Sale KL, Hadi MZ, Simmons BA, Kent MS, Tullman-Ercek D.

Biotechnol Biofuels. 2013 Jul 3;6(1):93. doi: 10.1186/1754-6834-6-93.

39.

Change, exchange, and rearrange: protein engineering for the biotechnological production of fuels, pharmaceuticals, and other chemicals.

Fisher MA, Tullman-Ercek D.

Curr Opin Biotechnol. 2013 Dec;24(6):1010-6. doi: 10.1016/j.copbio.2013.02.027. Epub 2013 Mar 20. Review.

PMID:
23522655
40.

Engineering nanoscale protein compartments for synthetic organelles.

Kim EY, Tullman-Ercek D.

Curr Opin Biotechnol. 2013 Aug;24(4):627-32. doi: 10.1016/j.copbio.2012.11.012. Epub 2012 Dec 27. Review.

PMID:
23273660
41.

Osmolyte-mediated encapsulation of proteins inside MS2 viral capsids.

Glasgow JE, Capehart SL, Francis MB, Tullman-Ercek D.

ACS Nano. 2012 Oct 23;6(10):8658-64. doi: 10.1021/nn302183h. Epub 2012 Sep 12.

42.

Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli.

Bokinsky G, Peralta-Yahya PP, George A, Holmes BM, Steen EJ, Dietrich J, Lee TS, Tullman-Ercek D, Voigt CA, Simmons BA, Keasling JD.

Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):19949-54. doi: 10.1073/pnas.1106958108. Epub 2011 Nov 28.

43.

Engineering the Salmonella type III secretion system to export spider silk monomers.

Widmaier DM, Tullman-Ercek D, Mirsky EA, Hill R, Govindarajan S, Minshull J, Voigt CA.

Mol Syst Biol. 2009;5:309. doi: 10.1038/msb.2009.62. Epub 2009 Sep 15.

44.

Exploration of twin-arginine translocation for expression and purification of correctly folded proteins in Escherichia coli.

Fisher AC, Kim JY, Perez-Rodriguez R, Tullman-Ercek D, Fish WR, Henderson LA, DeLisa MP.

Microb Biotechnol. 2008 Sep;1(5):403-15. doi: 10.1111/j.1751-7915.2008.00041.x.

45.

Induction and relaxation dynamics of the regulatory network controlling the type III secretion system encoded within Salmonella pathogenicity island 1.

Temme K, Salis H, Tullman-Ercek D, Levskaya A, Hong SH, Voigt CA.

J Mol Biol. 2008 Mar 14;377(1):47-61. doi: 10.1016/j.jmb.2007.12.044. Epub 2007 Dec 28.

46.

Export pathway selectivity of Escherichia coli twin arginine translocation signal peptides.

Tullman-Ercek D, DeLisa MP, Kawarasaki Y, Iranpour P, Ribnicky B, Palmer T, Georgiou G.

J Biol Chem. 2007 Mar 16;282(11):8309-16. Epub 2007 Jan 11.

47.

The bacterial twin-arginine translocation pathway.

Lee PA, Tullman-Ercek D, Georgiou G.

Annu Rev Microbiol. 2006;60:373-95. Review.

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