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Items: 1 to 50 of 178

1.

Draft Genome Sequence of Acidovorax sp. Strain NB1, Isolated from a Nitrite-Oxidizing Enrichment Culture.

Ide H, Ishii K, Fujitani H, Tsuneda S.

Microbiol Resour Announc. 2019 Aug 15;8(33). pii: e00547-19. doi: 10.1128/MRA.00547-19.

2.

Corrigendum: Nitrosomonas europaea MazF Specifically Recognises the UGG Motif and Promotes Selective RNA Degradation.

Miyamoto T, Yokota A, Ota Y, Tsuruga M, Aoi R, Tsuneda S, Noda N.

Front Microbiol. 2019 Apr 3;10:634. doi: 10.3389/fmicb.2019.00634. eCollection 2019.

3.

Fluorescent nucleic acid probe in droplets for bacterial sorting (FNAP-sort) as a high-throughput screening method for environmental bacteria with various growth rates.

Ota Y, Saito K, Takagi T, Matsukura S, Morita M, Tsuneda S, Noda N.

PLoS One. 2019 Apr 17;14(4):e0214533. doi: 10.1371/journal.pone.0214533. eCollection 2019.

4.

End-Sealed High Aspect Ratio Hollow Nanotubes Encapsulating an Anticancer Drug: Torpedo-Shaped Peptidic Nanocapsules.

Ueda M, Seo S, Nair BG, Müller S, Takahashi E, Arai T, Iyoda T, Fujii SI, Tsuneda S, Ito Y.

ACS Nano. 2019 Jan 22;13(1):305-312. doi: 10.1021/acsnano.8b06189. Epub 2019 Jan 4.

PMID:
30606006
5.

Nitrosomonas europaea MazF Specifically Recognises the UGG Motif and Promotes Selective RNA Degradation.

Miyamoto T, Yokota A, Ota Y, Tsuruga M, Aoi R, Tsuneda S, Noda N.

Front Microbiol. 2018 Oct 8;9:2386. doi: 10.3389/fmicb.2018.02386. eCollection 2018. Erratum in: Front Microbiol. 2019 Apr 03;10:634.

6.

Low-temperature culturing improves survival rate of tissue-engineered cardiac cell sheets.

Sakaguchi K, Hinata Y, Kagawa Y, Iwasaki K, Tsuneda S, Shimizu T, Umezu M.

Biochem Biophys Rep. 2018 Apr 25;14:89-97. doi: 10.1016/j.bbrep.2018.04.001. eCollection 2018 Jul.

7.

Skewed megakaryopoiesis in human induced pluripotent stem cell-derived haematopoietic progenitor cells harbouring calreticulin mutations.

Takei H, Edahiro Y, Mano S, Masubuchi N, Mizukami Y, Imai M, Morishita S, Misawa K, Ochiai T, Tsuneda S, Endo H, Nakamura S, Eto K, Ohsaka A, Araki M, Komatsu N.

Br J Haematol. 2018 Jun;181(6):791-802. doi: 10.1111/bjh.15266. Epub 2018 May 9.

PMID:
29741776
8.

AldB controls persister formation in Escherichia coli depending on environmental stress.

Kawai Y, Matsumoto S, Ling Y, Okuda S, Tsuneda S.

Microbiol Immunol. 2018 May;62(5):299-309. doi: 10.1111/1348-0421.12587. Epub 2018 Apr 24.

PMID:
29577369
9.

Stochastic expression of lactate dehydrogenase A induces Escherichia coli persister formation.

Yamamoto N, Isshiki R, Kawai Y, Tanaka D, Sekiguchi T, Matsumoto S, Tsuneda S.

J Biosci Bioeng. 2018 Jul;126(1):30-37. doi: 10.1016/j.jbiosc.2018.01.016. Epub 2018 Feb 12.

PMID:
29449156
10.

"All-in-one" in vitro selection of collagen-binding vascular endothelial growth factor.

Park SH, Uzawa T, Hattori F, Ogino S, Morimoto N, Tsuneda S, Ito Y.

Biomaterials. 2018 Apr;161:270-278. doi: 10.1016/j.biomaterials.2018.01.055. Epub 2018 Feb 3.

PMID:
29425847
11.

Genomic Analysis of Two Phylogenetically Distinct Nitrospira Species Reveals Their Genomic Plasticity and Functional Diversity.

Ushiki N, Fujitani H, Shimada Y, Morohoshi T, Sekiguchi Y, Tsuneda S.

Front Microbiol. 2018 Jan 9;8:2637. doi: 10.3389/fmicb.2017.02637. eCollection 2017.

12.

Meta-Analysis of Fecal Microbiota and Metabolites in Experimental Colitic Mice during the Inflammatory and Healing Phases.

Osaka T, Moriyama E, Arai S, Date Y, Yagi J, Kikuchi J, Tsuneda S.

Nutrients. 2017 Dec 6;9(12). pii: E1329. doi: 10.3390/nu9121329.

13.

High-rate nitrification of electronic industry wastewater by using nitrifying granules.

Hasebe Y, Meguro H, Kanai Y, Eguchi M, Osaka T, Tsuneda S.

Water Sci Technol. 2017 Dec;76(11-12):3171-3180. doi: 10.2166/wst.2017.431.

PMID:
29210703
14.

Unique transcriptional profile of native persisters in Escherichia coli.

Matsumoto S, Kawai Y, Miyagawa S, Iwamoto Y, Okuda S, Sánchez-Gorostiaga A, Vicente M, Tsuneda S.

J Biosci Bioeng. 2018 Jan;125(1):15-22. doi: 10.1016/j.jbiosc.2017.07.015. Epub 2017 Aug 15.

PMID:
28821380
15.

Characterization of a Deinococcus radiodurans MazF: A UACA-specific RNA endoribonuclease.

Miyamoto T, Ota Y, Yokota A, Suyama T, Tsuneda S, Noda N.

Microbiologyopen. 2017 Oct;6(5). doi: 10.1002/mbo3.501. Epub 2017 Jul 3.

16.

Enrichment and Physiological Characterization of a Cold-Adapted Nitrite-Oxidizing Nitrotoga sp. from an Eelgrass Sediment.

Ishii K, Fujitani H, Soh K, Nakagawa T, Takahashi R, Tsuneda S.

Appl Environ Microbiol. 2017 Jun 30;83(14). pii: e00549-17. doi: 10.1128/AEM.00549-17. Print 2017 Jul 15.

17.

Four Aromatic Sulfates with an Inhibitory Effect against HCV NS3 Helicase from the Crinoid Alloeocomatella polycladia.

Hermawan I, Furuta A, Higashi M, Fujita Y, Akimitsu N, Yamashita A, Moriishi K, Tsuneda S, Tani H, Nakakoshi M, Tsubuki M, Sekiguchi Y, Noda N, Tanaka J.

Mar Drugs. 2017 Apr 11;15(4). pii: E117. doi: 10.3390/md15040117.

18.

Nitrite oxidation kinetics of two Nitrospira strains: The quest for competition and ecological niche differentiation.

Ushiki N, Jinno M, Fujitani H, Suenaga T, Terada A, Tsuneda S.

J Biosci Bioeng. 2017 May;123(5):581-589. doi: 10.1016/j.jbiosc.2016.12.016. Epub 2017 Feb 13.

PMID:
28202306
19.

pH-gradient ion-exchange microbial cell chromatography as a simple method for microbial separation.

Aoi Y, Kaneko Y, Tsuneda S.

J Biosci Bioeng. 2017 Apr;123(4):431-436. doi: 10.1016/j.jbiosc.2016.10.012. Epub 2016 Dec 4.

PMID:
27923729
20.

Ecophysiology and Comparative Genomics of Nitrosomonas mobilis Ms1 Isolated from Autotrophic Nitrifying Granules of Wastewater Treatment Bioreactor.

Thandar SM, Ushiki N, Fujitani H, Sekiguchi Y, Tsuneda S.

Front Microbiol. 2016 Nov 22;7:1869. eCollection 2016.

21.

A rapid collection of yet unknown ammonia oxidizers in pure culture from activated sludge.

Abe T, Ushiki N, Fujitani H, Tsuneda S.

Water Res. 2017 Jan 1;108:169-178. doi: 10.1016/j.watres.2016.10.070. Epub 2016 Oct 31.

PMID:
27836171
22.

AAU-Specific RNA Cleavage Mediated by MazF Toxin Endoribonuclease Conserved in Nitrosomonas europaea.

Miyamoto T, Yokota A, Tsuneda S, Noda N.

Toxins (Basel). 2016 Jun 4;8(6). pii: E174. doi: 10.3390/toxins8060174.

23.

Physical enrichment of uncultured Accumulibacter and Nitrospira from activated sludge by unlabeled cell sorting technique.

Irie K, Fujitani H, Tsuneda S.

J Biosci Bioeng. 2016 Oct;122(4):475-81. doi: 10.1016/j.jbiosc.2016.03.020. Epub 2016 Apr 16.

PMID:
27094955
24.

Retraction: Reproducible subcutaneous transplantation of cell sheets into recipient mice.

Yamato M, Tsuneda S, Okano T.

Nat Protoc. 2016 Mar;11(3):616. doi: 10.1038/nprot0316.616a. Epub 2016 Feb 25. No abstract available.

PMID:
26914318
25.

Characterization of MazF-Mediated Sequence-Specific RNA Cleavage in Pseudomonas putida Using Massive Parallel Sequencing.

Miyamoto T, Kato Y, Sekiguchi Y, Tsuneda S, Noda N.

PLoS One. 2016 Feb 17;11(2):e0149494. doi: 10.1371/journal.pone.0149494. eCollection 2016.

26.

Real-time quantitation of internal metabolic activity of three-dimensional engineered tissues using an oxygen microelectrode and optical coherence tomography.

Kagawa Y, Haraguchi Y, Tsuneda S, Shimizu T.

J Biomed Mater Res B Appl Biomater. 2017 May;105(4):855-864. doi: 10.1002/jbm.b.33582. Epub 2016 Jan 29.

PMID:
26821598
27.

Bacterial metabolites directly modulate farnesoid X receptor activity.

Zhang X, Osaka T, Tsuneda S.

Nutr Metab (Lond). 2015 Nov 24;12:48. doi: 10.1186/s12986-015-0045-y. eCollection 2015.

28.

System for measuring oxygen consumption rates of mammalian cells in static culture under hypoxic conditions.

Kagawa Y, Miyahara H, Ota Y, Tsuneda S.

Biotechnol Prog. 2016 Jan-Feb;32(1):189-97. doi: 10.1002/btpr.2202. Epub 2015 Nov 27.

PMID:
26558344
29.

Selective isolation of ammonia-oxidizing bacteria from autotrophic nitrifying granules by applying cell-sorting and sub-culturing of microcolonies.

Fujitani H, Kumagai A, Ushiki N, Momiuchi K, Tsuneda S.

Front Microbiol. 2015 Oct 16;6:1159. doi: 10.3389/fmicb.2015.01159. eCollection 2015.

30.

Effect of Lipopolysaccharide on the Progression of Non-Alcoholic Fatty Liver Disease in High Caloric Diet-Fed Mice.

Matsushita N, Osaka T, Haruta I, Ueshiba H, Yanagisawa N, Omori-Miyake M, Hashimoto E, Shibata N, Tokushige K, Saito K, Tsuneda S, Yagi J.

Scand J Immunol. 2016 Feb;83(2):109-18. doi: 10.1111/sji.12397.

31.

Identification of Hydroxyanthraquinones as Novel Inhibitors of Hepatitis C Virus NS3 Helicase.

Furuta A, Tsubuki M, Endoh M, Miyamoto T, Tanaka J, Salam KA, Akimitsu N, Tani H, Yamashita A, Moriishi K, Nakakoshi M, Sekiguchi Y, Tsuneda S, Noda N.

Int J Mol Sci. 2015 Aug 7;16(8):18439-53. doi: 10.3390/ijms160818439.

32.

Mathematical modeling of dormant cell formation in growing biofilm.

Chihara K, Matsumoto S, Kagawa Y, Tsuneda S.

Front Microbiol. 2015 May 28;6:534. doi: 10.3389/fmicb.2015.00534. eCollection 2015.

33.

Melting curve analysis after T allele enrichment (MelcaTle) as a highly sensitive and reliable method for detecting the JAK2V617F mutation.

Morishita S, Takahashi K, Araki M, Hironaka Y, Sunami Y, Edahiro Y, Tsutsui M, Ohsaka A, Tsuneda S, Komatsu N.

PLoS One. 2015 Mar 20;10(3):e0122003. doi: 10.1371/journal.pone.0122003. eCollection 2015.

34.

Strengthening of the intestinal epithelial tight junction by Bifidobacterium bifidum.

Hsieh CY, Osaka T, Moriyama E, Date Y, Kikuchi J, Tsuneda S.

Physiol Rep. 2015 Mar;3(3). pii: e12327. doi: 10.14814/phy2.12327.

35.

Phosphorylated 5-ethynyl-2'-deoxyuridine for advanced DNA labeling.

Seo S, Onizuka K, Nishioka C, Takahashi E, Tsuneda S, Abe H, Ito Y.

Org Biomol Chem. 2015 Apr 21;13(15):4589-95. doi: 10.1039/c5ob00199d.

PMID:
25777799
36.

A fluorescence-based screening assay for identification of hepatitis C virus NS3 helicase inhibitors and characterization of their inhibitory mechanism.

Furuta A, Salam KA, Tani H, Tsuneda S, Sekiguchi Y, Akimitsu N, Noda N.

Methods Mol Biol. 2015;1259:211-28. doi: 10.1007/978-1-4939-2214-7_14.

PMID:
25579589
37.

Direct measurement of local dissolved oxygen concentration spatial profiles in a cell culture environment.

Kagawa Y, Matsuura K, Shimizu T, Tsuneda S.

Biotechnol Bioeng. 2015 Jun;112(6):1263-74. doi: 10.1002/bit.25531. Epub 2015 Apr 17. Erratum in: Biotechnol Bioeng. 2016 Feb;113(2):457.

PMID:
25565074
38.

Isolation of sublineage I Nitrospira by a novel cultivation strategy.

Fujitani H, Ushiki N, Tsuneda S, Aoi Y.

Environ Microbiol. 2014 Oct;16(10):3030-40. doi: 10.1111/1462-2920.12248. Epub 2013 Sep 24.

PMID:
25312601
39.

Detection of MPLW515L/K mutations and determination of allele frequencies with a single-tube PCR assay.

Takei H, Morishita S, Araki M, Edahiro Y, Sunami Y, Hironaka Y, Noda N, Sekiguchi Y, Tsuneda S, Ohsaka A, Komatsu N.

PLoS One. 2014 Aug 21;9(8):e104958. doi: 10.1371/journal.pone.0104958. eCollection 2014. Erratum in: PLoS One. 2015;10(4):e0124208.

40.

Modeling the nutrient removal process in aerobic granular sludge system by coupling the reactor- and granule-scale models.

Kagawa Y, Tahata J, Kishida N, Matsumoto S, Picioreanu C, van Loosdrecht MC, Tsuneda S.

Biotechnol Bioeng. 2015 Jan;112(1):53-64. doi: 10.1002/bit.25331. Epub 2014 Sep 2.

PMID:
25042400
41.

Mathematical modelling of spatio-temporal cell dynamics in colonic crypts following irradiation.

Murano T, Kagawa Y, Tsuneda S.

Cell Prolif. 2014 Aug;47(4):347-55. doi: 10.1111/cpr.12110. Epub 2014 May 14.

PMID:
24828339
42.

PBDE: structure-activity studies for the inhibition of hepatitis C virus NS3 helicase.

Salam KA, Furuta A, Noda N, Tsuneda S, Sekiguchi Y, Yamashita A, Moriishi K, Nakakoshi M, Tani H, Roy SR, Tanaka J, Tsubuki M, Akimitsu N.

Molecules. 2014 Apr 2;19(4):4006-20. doi: 10.3390/molecules19044006.

43.

JAK2V617F mutation status and allele burden in classical Ph-negative myeloproliferative neoplasms in Japan.

Edahiro Y, Morishita S, Takahashi K, Hironaka Y, Yahata Y, Sunami Y, Shirane S, Tsutsui M, Noguchi M, Koike M, Imai K, Kirito K, Noda N, Sekiguchi Y, Tsuneda S, Ohsaka A, Araki M, Komatsu N.

Int J Hematol. 2014;99(5):625-34. doi: 10.1007/s12185-014-1567-1. Epub 2014 Mar 28.

PMID:
24677207
44.

Identification and biochemical characterization of halisulfate 3 and suvanine as novel inhibitors of hepatitis C virus NS3 helicase from a marine sponge.

Furuta A, Salam KA, Hermawan I, Akimitsu N, Tanaka J, Tani H, Yamashita A, Moriishi K, Nakakoshi M, Tsubuki M, Peng PW, Suzuki Y, Yamamoto N, Sekiguchi Y, Tsuneda S, Noda N.

Mar Drugs. 2014 Jan 21;12(1):462-76. doi: 10.3390/md12010462.

45.

Modeling of stem cell dynamics in human colonic crypts in silico.

Kagawa Y, Horita N, Taniguchi H, Tsuneda S.

J Gastroenterol. 2014 Feb;49(2):263-9.

PMID:
24077809
46.

Isolation of Nitrospira belonging to sublineage II from a wastewater treatment plant.

Ushiki N, Fujitani H, Aoi Y, Tsuneda S.

Microbes Environ. 2013;28(3):346-53. Epub 2013 Sep 4.

47.

Complete autotrophic denitrification in a single reactor using nitritation and anammox gel carriers.

Isaka K, Kimura Y, Yamamoto T, Osaka T, Tsuneda S.

Bioresour Technol. 2013 Nov;147:96-101. doi: 10.1016/j.biortech.2013.07.095. Epub 2013 Jul 25.

PMID:
23994309
48.
49.

Cholesterol sulfate as a potential inhibitor of hepatitis C virus NS3 helicase.

Furuta A, Salam KA, Akimitsu N, Tanaka J, Tani H, Yamashita A, Moriishi K, Nakakoshi M, Tsubuki M, Sekiguchi Y, Tsuneda S, Noda N.

J Enzyme Inhib Med Chem. 2014 Apr;29(2):223-9. doi: 10.3109/14756366.2013.766607. Epub 2013 Feb 25.

PMID:
23432541
50.

Psammaplin A inhibits hepatitis C virus NS3 helicase.

Salam KA, Furuta A, Noda N, Tsuneda S, Sekiguchi Y, Yamashita A, Moriishi K, Nakakoshi M, Tsubuki M, Tani H, Tanaka J, Akimitsu N.

J Nat Med. 2013 Oct;67(4):765-72. doi: 10.1007/s11418-013-0742-7. Epub 2013 Jan 29.

PMID:
23359228

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