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Items: 1 to 50 of 196

1.

Unraveling quiescence-specific repressive chromatin domains.

Swygert SG, Tsukiyama T.

Curr Genet. 2019 Oct;65(5):1145-1151. doi: 10.1007/s00294-019-00985-9. Epub 2019 May 4. Review.

PMID:
31055637
2.

Generation of an OCT3/4 reporter cynomolgus monkey ES cell line using CRISPR/Cas9.

Kobayashi K, Tsukiyama T, Nakaya M, Kageyama S, Tomita K, Murai R, Yoshida T, Narita M, Kawauchi A, Ema M.

Stem Cell Res. 2019 May;37:101439. doi: 10.1016/j.scr.2019.101439. Epub 2019 Apr 15.

3.

Comprehensive evaluation of ubiquitous promoters suitable for the generation of transgenic cynomolgus monkeys†.

Seita Y, Tsukiyama T, Azami T, Kobayashi K, Iwatani C, Tsuchiya H, Nakaya M, Tanabe H, Hitoshi S, Miyoshi H, Nakamura S, Kawauchi A, Ema M.

Biol Reprod. 2019 Jun 1;100(6):1440-1452. doi: 10.1093/biolre/ioz040.

PMID:
30869744
4.

Thoracic Endovascular Aortic Repair of Esophageal Cancer-Associated Aortoesophageal Fistula: A Case Report and Literature Review.

Sasaki A, Egashira H, Tokoro S, Ichita C, Takizawa S, Tsukiyama T, Ogino H, Kawachi J, Shimoyama R, Kako M.

Case Rep Oncol Med. 2018 Dec 19;2018:9851397. doi: 10.1155/2018/9851397. eCollection 2018.

5.

Generating Vegfr3 reporter transgenic mouse expressing membrane-tagged Venus for visualization of VEGFR3 expression in vascular and lymphatic endothelial cells.

Watanabe C, Matsushita J, Azami T, Tsukiyama-Fujii S, Tsukiyama T, Mizuno S, Takahashi S, Ema M.

PLoS One. 2019 Jan 2;14(1):e0210060. doi: 10.1371/journal.pone.0210060. eCollection 2019.

6.

Condensin-Dependent Chromatin Compaction Represses Transcription Globally during Quiescence.

Swygert SG, Kim S, Wu X, Fu T, Hsieh TH, Rando OJ, Eisenman RN, Shendure J, McKnight JN, Tsukiyama T.

Mol Cell. 2019 Feb 7;73(3):533-546.e4. doi: 10.1016/j.molcel.2018.11.020. Epub 2018 Dec 27.

PMID:
30595435
7.

Chromatin Remodeling Factors Isw2 and Ino80 Regulate Chromatin, Replication, and Copy Number of the Saccharomyces cerevisiae Ribosomal DNA Locus.

Cutler S, Lee LJ, Tsukiyama T.

Genetics. 2018 Dec;210(4):1543-1556. doi: 10.1534/genetics.118.301579. Epub 2018 Oct 24.

PMID:
30355728
8.

CT-guided Biopsy for the Diagnosis of Pulmonary Epithelioid Hemangioendothelioma Mimicking Metastatic Lung Cancer.

Sasaki A, Egashira H, Sugimoto H, Seki K, Tsukiyama T, Ichita C, Tokoro S, Takizawa S, Kitagawa I, Teshima S, Kako M.

Intern Med. 2018 Dec 15;57(24):3631-3635. doi: 10.2169/internalmedicine.1063-18. Epub 2018 Aug 10.

9.

Lineage-specific gene acquisition or loss is involved in interspecific hybrid sterility in rice.

Koide Y, Ogino A, Yoshikawa T, Kitashima Y, Saito N, Kanaoka Y, Onishi K, Yoshitake Y, Tsukiyama T, Saito H, Teraishi M, Yamagata Y, Uemura A, Takagi H, Hayashi Y, Abe T, Fukuta Y, Okumoto Y, Kanazawa A.

Proc Natl Acad Sci U S A. 2018 Feb 27;115(9):E1955-E1962. doi: 10.1073/pnas.1711656115. Epub 2018 Feb 14.

10.

Natural Course of Human T-Cell Leukemia Virus Type 1 Proviral DNA Levels in Carriers During Pregnancy.

Fuchi N, Miura K, Tsukiyama T, Sasaki D, Ishihara K, Tsuruda K, Hasegawa H, Miura S, Yanagihara K, Masuzaki H.

J Infect Dis. 2018 Apr 11;217(9):1383-1389. doi: 10.1093/infdis/jiy017.

PMID:
29346571
11.

Preparation and Analysis of Saccharomyces cerevisiae Quiescent Cells.

Spain MM, Swygert SG, Tsukiyama T.

Methods Mol Biol. 2018;1686:125-135. doi: 10.1007/978-1-4939-7371-2_9.

PMID:
29030817
12.

Type XVII collagen coordinates proliferation in the interfollicular epidermis.

Watanabe M, Natsuga K, Nishie W, Kobayashi Y, Donati G, Suzuki S, Fujimura Y, Tsukiyama T, Ujiie H, Shinkuma S, Nakamura H, Murakami M, Ozaki M, Nagayama M, Watt FM, Shimizu H.

Elife. 2017 Jul 11;6. pii: e26635. doi: 10.7554/eLife.26635.

13.

Flexible adaptation of male germ cells from female iPSCs of endangered Tokudaia osimensis.

Honda A, Choijookhuu N, Izu H, Kawano Y, Inokuchi M, Honsho K, Lee AR, Nabekura H, Ohta H, Tsukiyama T, Ohinata Y, Kuroiwa A, Hishikawa Y, Saitou M, Jogahara T, Koshimoto C.

Sci Adv. 2017 May 12;3(5):e1602179. doi: 10.1126/sciadv.1602179. eCollection 2017 May.

14.

New supplemental landmark for the greater palatine foramen as found deep to soft tissue: application for the greater palatine nerve block.

Iwanaga J, Voin V, Nasseh AA, Kido J, Tsukiyama T, Kamura Y, Tanaka T, Fisahn C, Alonso F, Oskouian RJ, Tubbs RS.

Surg Radiol Anat. 2017 Sep;39(9):981-984. doi: 10.1007/s00276-017-1829-8. Epub 2017 Feb 24.

PMID:
28236129
15.

Derivation of Induced Trophoblast Cell Lines in Cattle by Doxycycline-Inducible piggyBac Vectors.

Kawaguchi T, Cho D, Hayashi M, Tsukiyama T, Kimura K, Matsuyama S, Minami N, Yamada M, Imai H.

PLoS One. 2016 Dec 1;11(12):e0167550. doi: 10.1371/journal.pone.0167550. eCollection 2016.

16.

Nucleosome occupancy as a novel chromatin parameter for replication origin functions.

Rodriguez J, Lee L, Lynch B, Tsukiyama T.

Genome Res. 2017 Feb;27(2):269-277. doi: 10.1101/gr.209940.116. Epub 2016 Nov 28.

17.

Visualization of the Epiblast and Visceral Endodermal Cells Using Fgf5-P2A-Venus BAC Transgenic Mice and Epiblast Stem Cells.

Khoa le TP, Azami T, Tsukiyama T, Matsushita J, Tsukiyama-Fujii S, Takahashi S, Ema M.

PLoS One. 2016 Jul 13;11(7):e0159246. doi: 10.1371/journal.pone.0159246. eCollection 2016.

18.

Generation of transgenic cynomolgus monkeys that express green fluorescent protein throughout the whole body.

Seita Y, Tsukiyama T, Iwatani C, Tsuchiya H, Matsushita J, Azami T, Okahara J, Nakamura S, Hayashi Y, Hitoshi S, Itoh Y, Imamura T, Nishimura M, Tooyama I, Miyoshi H, Saitou M, Ogasawara K, Sasaki E, Ema M.

Sci Rep. 2016 Apr 25;6:24868. doi: 10.1038/srep24868.

19.

Expansion of antisense lncRNA transcriptomes in budding yeast species since the loss of RNAi.

Alcid EA, Tsukiyama T.

Nat Struct Mol Biol. 2016 May;23(5):450-5. doi: 10.1038/nsmb.3192. Epub 2016 Mar 28.

20.

Sequence-targeted nucleosome sliding in vivo by a hybrid Chd1 chromatin remodeler.

McKnight JN, Tsukiyama T, Bowman GD.

Genome Res. 2016 May;26(5):693-704. doi: 10.1101/gr.199919.115. Epub 2016 Mar 18.

21.

Systematic approaches to identify functional lncRNAs.

Alcid EA, Tsukiyama T.

Curr Opin Genet Dev. 2016 Apr;37:46-50. doi: 10.1016/j.gde.2015.12.005. Epub 2016 Jan 26. Review.

22.

The conserved HDAC Rpd3 drives transcriptional quiescence in S. cerevisiae.

McKnight JN, Tsukiyama T.

Genom Data. 2015 Oct 17;6:245-8. doi: 10.1016/j.gdata.2015.10.008. eCollection 2015 Dec.

23.

A molecular off switch for transcriptional quiescence.

McKnight JN, Breeden LL, Tsukiyama T.

Cell Cycle. 2015;14(23):3667-8. doi: 10.1080/15384101.2015.1112618. No abstract available.

24.

Global Promoter Targeting of a Conserved Lysine Deacetylase for Transcriptional Shutoff during Quiescence Entry.

McKnight JN, Boerma JW, Breeden LL, Tsukiyama T.

Mol Cell. 2015 Sep 3;59(5):732-43. doi: 10.1016/j.molcel.2015.07.014. Epub 2015 Aug 20.

25.

Generation of Naïve Bovine Induced Pluripotent Stem Cells Using PiggyBac Transposition of Doxycycline-Inducible Transcription Factors.

Kawaguchi T, Tsukiyama T, Kimura K, Matsuyama S, Minami N, Yamada M, Imai H.

PLoS One. 2015 Aug 19;10(8):e0135403. doi: 10.1371/journal.pone.0135403. eCollection 2015.

26.

Wide genetic variation in phenolic compound content of seed coats among black soybean cultivars.

Phommalath S, Teraishi M, Yoshikawa T, Saito H, Tsukiyama T, Nakazaki T, Tanisaka T, Okumoto Y.

Breed Sci. 2014 Dec;64(4):409-15. doi: 10.1270/jsbbs.64.409. Epub 2014 Dec 1.

27.

Molecular Role of RNF43 in Canonical and Noncanonical Wnt Signaling.

Tsukiyama T, Fukui A, Terai S, Fujioka Y, Shinada K, Takahashi H, Yamaguchi TP, Ohba Y, Hatakeyama S.

Mol Cell Biol. 2015 Jun 1;35(11):2007-23. doi: 10.1128/MCB.00159-15. Epub 2015 Mar 30.

28.

A hyperactive piggyBac transposon system is an easy-to-implement method for introducing foreign genes into mouse preimplantation embryos.

Suzuki S, Tsukiyama T, Kaneko T, Imai H, Minami N.

J Reprod Dev. 2015;61(3):241-4. doi: 10.1262/jrd.2014-157. Epub 2015 Feb 10.

29.

Chromatin remodeling factors Isw2 and Ino80 regulate checkpoint activity and chromatin structure in S phase.

Lee L, Rodriguez J, Tsukiyama T.

Genetics. 2015 Apr;199(4):1077-91. doi: 10.1534/genetics.115.174730. Epub 2015 Feb 19.

30.

MED26 regulates the transcription of snRNA genes through the recruitment of little elongation complex.

Takahashi H, Takigawa I, Watanabe M, Anwar D, Shibata M, Tomomori-Sato C, Sato S, Ranjan A, Seidel CW, Tsukiyama T, Mizushima W, Hayashi M, Ohkawa Y, Conaway JW, Conaway RC, Hatakeyama S.

Nat Commun. 2015 Jan 9;6:5941. doi: 10.1038/ncomms6941.

31.

The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice.

Yoshitake Y, Yokoo T, Saito H, Tsukiyama T, Quan X, Zikihara K, Katsura H, Tokutomi S, Aboshi T, Mori N, Inoue H, Nishida H, Kohchi T, Teraishi M, Okumoto Y, Tanisaka T.

Sci Rep. 2015 Jan 9;5:7709. doi: 10.1038/srep07709.

32.

The inflammatory cytokine IL-1β is involved in bladder remodeling after bladder outlet obstruction in mice.

Kanno Y, Mitsui T, Kitta T, Moriya K, Tsukiyama T, Hatakeyama S, Nonomura K.

Neurourol Urodyn. 2016 Mar;35(3):377-81. doi: 10.1002/nau.22721. Epub 2015 Jan 3.

PMID:
25557558
33.

Initiation of DNA replication from non-canonical sites on an origin-depleted chromosome.

Bogenschutz NL, Rodriguez J, Tsukiyama T.

PLoS One. 2014 Dec 8;9(12):e114545. doi: 10.1371/journal.pone.0114545. eCollection 2014.

34.

[A case of arteriovenous malformation of the pancreas treated with n-butyl-2-cyanoacrylate transcatheter arterial embolization].

Uojima H, Tsukiyama T, Ichida C, Tsuchiya T, Itoi T.

Nihon Shokakibyo Gakkai Zasshi. 2014 Nov;111(11):2174-80. Review. Japanese.

PMID:
25373379
35.

ATP-dependent chromatin remodeling shapes the long noncoding RNA landscape.

Alcid EA, Tsukiyama T.

Genes Dev. 2014 Nov 1;28(21):2348-60. doi: 10.1101/gad.250902.114.

36.

Genome-Wide Analysis of Nucleosome Positions, Occupancy, and Accessibility in Yeast: Nucleosome Mapping, High-Resolution Histone ChIP, and NCAM.

Rodriguez J, McKnight JN, Tsukiyama T.

Curr Protoc Mol Biol. 2014 Oct 1;108:21.28.1-16. doi: 10.1002/0471142727.mb2128s108. Review.

37.

Establishment of trophoblast stem cells under defined culture conditions in mice.

Ohinata Y, Tsukiyama T.

PLoS One. 2014 Sep 9;9(9):e107308. doi: 10.1371/journal.pone.0107308. eCollection 2014. Erratum in: PLoS One. 2015;10(3):e0121167.

38.

Early embryogenesis-specific expression of the rice transposon Ping enhances amplification of the MITE mPing.

Teramoto S, Tsukiyama T, Okumoto Y, Tanisaka T.

PLoS Genet. 2014 Jun 12;10(6):e1004396. doi: 10.1371/journal.pgen.1004396. eCollection 2014 Jun.

39.

Se14, encoding a JmjC domain-containing protein, plays key roles in long-day suppression of rice flowering through the demethylation of H3K4me3 of RFT1.

Yokoo T, Saito H, Yoshitake Y, Xu Q, Asami T, Tsukiyama T, Teraishi M, Okumoto Y, Tanisaka T.

PLoS One. 2014 Apr 23;9(4):e96064. doi: 10.1371/journal.pone.0096064. eCollection 2014.

40.

A modified EpiSC culture condition containing a GSK3 inhibitor can support germline-competent pluripotency in mice.

Tsukiyama T, Ohinata Y.

PLoS One. 2014 Apr 15;9(4):e95329. doi: 10.1371/journal.pone.0095329. eCollection 2014.

41.

A comprehensive system for generation and evaluation of induced pluripotent stem cells using piggyBac transposition.

Tsukiyama T, Kato-Itoh M, Nakauchi H, Ohinata Y.

PLoS One. 2014 Mar 25;9(3):e92973. doi: 10.1371/journal.pone.0092973. eCollection 2014.

42.

The effects of the photoperiod-insensitive alleles, se13, hd1 and ghd7, on yield components in rice.

Xu Q, Saito H, Hirose I, Katsura K, Yoshitake Y, Yokoo T, Tsukiyama T, Teraishi M, Tanisaka T, Okumoto Y.

Mol Breed. 2014;33:813-819. Epub 2013 Nov 30.

43.

Transient dual-luciferase assay combined with a glucocorticoid-inducible system for rice protoplasts.

Hamamoto Y, Tsukiyama T, Yoshikake Y, Teraishi M, Okumoto Y, Tanisaka T.

Biosci Biotechnol Biochem. 2013;77(12):2480-2. Epub 2013 Dec 7.

44.

Utilization of transposable element mPing as a novel genetic tool for modification of the stress response in rice.

Yasuda K, Ito M, Sugita T, Tsukiyama T, Saito H, Naito K, Teraishi M, Tanisaka T, Okumoto Y.

Mol Breed. 2013;32:505-516. Epub 2013 Jun 8.

45.

Restoration of gingival and esthetic deformities following flap advancement: the physiologically pigmented gingival graft--a case report.

Marcuschamer E, Tsukiyama T, Moroi H, Hawley CE, Griffin TJ.

Int J Periodontics Restorative Dent. 2013 Sep-Oct;33(5):591-7. doi: 10.11607/prd.1252.

PMID:
23998155
46.

DNA looping-dependent targeting of a chromatin remodeling factor.

Yadon AN, Tsukiyama T.

Cell Cycle. 2013 Jun 15;12(12):1809-10. doi: 10.4161/cc.25114. Epub 2013 May 24. No abstract available.

47.

Significance of crown shape in the replacement of a central incisor with a single implant-supported crown.

Gobbato L, Paniz G, Mazzocco F, Chierico A, Tsukiyama T, Levi PA Jr, Weisgold AS.

Quintessence Int. 2013 May;44(5):407-13. doi: 10.3290/j.qi.a29146.

PMID:
23479574
48.

DNA looping facilitates targeting of a chromatin remodeling enzyme.

Yadon AN, Singh BN, Hampsey M, Tsukiyama T.

Mol Cell. 2013 Apr 11;50(1):93-103. doi: 10.1016/j.molcel.2013.02.005. Epub 2013 Mar 7.

49.

ISWI and CHD chromatin remodelers bind promoters but act in gene bodies.

Zentner GE, Tsukiyama T, Henikoff S.

PLoS Genet. 2013;9(2):e1003317. doi: 10.1371/journal.pgen.1003317. Epub 2013 Feb 28.

50.

Loss-of-function of a ubiquitin-related modifier promotes the mobilization of the active MITE mPing.

Tsukiyama T, Teramoto S, Yasuda K, Horibata A, Mori N, Okumoto Y, Teraishi M, Saito H, Onishi A, Tamura K, Tanisaka T.

Mol Plant. 2013 May;6(3):790-801. doi: 10.1093/mp/sst042. Epub 2013 Feb 27.

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