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Items: 1 to 50 of 168

1.

Novel erythrocyte clumps revealed by an orphan gene Newtic1 in circulating blood and regenerating limbs of the adult newt.

Casco-Robles RM, Watanabe A, Eto K, Takeshima K, Obata S, Kinoshita T, Ariizumi T, Nakatani K, Nakada T, Tsonis PA, Casco-Robles MM, Sakurai K, Yahata K, Maruo F, Toyama F, Chiba C.

Sci Rep. 2018 May 10;8(1):7455. doi: 10.1038/s41598-018-25867-x.

2.

Complement component C3aR constitutes a novel regulator for chick eye morphogenesis.

Grajales-Esquivel E, Luz-Madrigal A, Bierly J, Haynes T, Reis ES, Han Z, Gutierrez C, McKinney Z, Tzekou A, Lambris JD, Tsonis PA, Del Rio-Tsonis K.

Dev Biol. 2017 Aug 1;428(1):88-100. doi: 10.1016/j.ydbio.2017.05.019. Epub 2017 May 30.

3.

MicroRNA-30a Regulation of Epithelial-Mesenchymal Transition in Diabetic Cataracts Through Targeting SNAI1.

Zhang L, Wang Y, Li W, Tsonis PA, Li Z, Xie L, Huang Y.

Sci Rep. 2017 Apr 25;7(1):1117. doi: 10.1038/s41598-017-01320-3.

4.

A linkage map for the Newt Notophthalmus viridescens: Insights in vertebrate genome and chromosome evolution.

Keinath MC, Voss SR, Tsonis PA, Smith JJ.

Dev Biol. 2017 Jun 15;426(2):211-218. doi: 10.1016/j.ydbio.2016.05.027. Epub 2016 Jun 2.

5.

A developmentally regulated switch from stem cells to dedifferentiation for limb muscle regeneration in newts.

Tanaka HV, Ng NCY, Yang Yu Z, Casco-Robles MM, Maruo F, Tsonis PA, Chiba C.

Nat Commun. 2016 Mar 30;7:11069. doi: 10.1038/ncomms11069.

6.

Initial characterization of the large genome of the salamander Ambystoma mexicanum using shotgun and laser capture chromosome sequencing.

Keinath MC, Timoshevskiy VA, Timoshevskaya NY, Tsonis PA, Voss SR, Smith JJ.

Sci Rep. 2015 Nov 10;5:16413. doi: 10.1038/srep16413.

7.

A robust transcriptional program in newts undergoing multiple events of lens regeneration throughout their lifespan.

Sousounis K, Qi F, Yadav MC, Millán JL, Toyama F, Chiba C, Eguchi Y, Eguchi G, Tsonis PA.

Elife. 2015 Nov 2;4. pii: e09594. doi: 10.7554/eLife.09594.

8.

mirPRo-a novel standalone program for differential expression and variation analysis of miRNAs.

Shi J, Dong M, Li L, Liu L, Luz-Madrigal A, Tsonis PA, Del Rio-Tsonis K, Liang C.

Sci Rep. 2015 Oct 5;5:14617. doi: 10.1038/srep14617.

9.

CADBURE: A generic tool to evaluate the performance of spliced aligners on RNA-Seq data.

Kumar PK, Hoang TV, Robinson ML, Tsonis PA, Liang C.

Sci Rep. 2015 Aug 25;5:13443. doi: 10.1038/srep13443.

10.

Comparative sequence- and structure-inspired drug design for PilF protein of Neisseria meningitidis.

Mehta AS, Snigdha K, Potukuchi MS, Tsonis PA.

Hum Genomics. 2015 Apr 19;9:5. doi: 10.1186/s40246-015-0027-1.

11.

Molecular signatures that correlate with induction of lens regeneration in newts: lessons from proteomic analysis.

Sousounis K, Bhavsar R, Looso M, Krüger M, Beebe J, Braun T, Tsonis PA.

Hum Genomics. 2014 Dec 11;8:22. doi: 10.1186/s40246-014-0022-y.

12.

Comparative transcriptome analysis of epithelial and fiber cells in newborn mouse lenses with RNA sequencing.

Hoang TV, Kumar PK, Sutharzan S, Tsonis PA, Liang C, Robinson ML.

Mol Vis. 2014 Nov 4;20:1491-517. eCollection 2014.

13.

The future of carbon-based scaffolds in foot and ankle surgery.

Czarnecki JS, Lafdi K, Tsonis PA.

Clin Podiatr Med Surg. 2015 Jan;32(1):73-91. doi: 10.1016/j.cpm.2014.09.001. Review.

PMID:
25440419
14.

Exogenous Oct-4 inhibits lens transdifferentiation in the newt Notophthalmus viridescens.

Bhavsar RB, Tsonis PA.

PLoS One. 2014 Jul 14;9(7):e102510. doi: 10.1371/journal.pone.0102510. eCollection 2014.

15.

Plasticity for axolotl lens regeneration is associated with age-related changes in gene expression.

Sousounis K, Athippozhy AT, Voss SR, Tsonis PA.

Regeneration (Oxf). 2014 Oct 12;1(3):47-57. doi: 10.1002/reg2.25. eCollection 2014 Jun.

16.

Cellular automata simulation of osteoblast growth on microfibrous-carbon-based scaffolds.

Czarnecki JS, Jolivet S, Blackmore ME, Lafdi K, Tsonis PA.

Tissue Eng Part A. 2014 Dec;20(23-24):3176-88. doi: 10.1089/ten.TEA.2013.0387.

PMID:
24875719
17.

Reprogramming of the chick retinal pigmented epithelium after retinal injury.

Luz-Madrigal A, Grajales-Esquivel E, McCorkle A, DiLorenzo AM, Barbosa-Sabanero K, Tsonis PA, Del Rio-Tsonis K.

BMC Biol. 2014 Apr 17;12:28. doi: 10.1186/1741-7007-12-28.

18.

Forced swim test induces divergent global transcriptomic alterations in the hippocampus of high versus low novelty-seeker rats.

Pitychoutis PM, Sanoudou D, Papandreou M, Nasias D, Kouskou M, Tomlinson CR, Tsonis PA, Papadopoulou-Daifoti Z.

Hum Genomics. 2014 Feb 25;8:4. doi: 10.1186/1479-7364-8-4.

19.

Aging and regeneration in vertebrates.

Sousounis K, Baddour JA, Tsonis PA.

Curr Top Dev Biol. 2014;108:217-46. doi: 10.1016/B978-0-12-391498-9.00008-5. Review.

PMID:
24512711
20.

Transcriptome analysis of Nautilus and pygmy squid developing eye provides insights in lens and eye evolution.

Sousounis K, Ogura A, Tsonis PA.

PLoS One. 2013 Oct 16;8(10):e78054. doi: 10.1371/journal.pone.0078054. eCollection 2013.

21.

Complement anaphylatoxin C3a is a potent inducer of embryonic chick retina regeneration.

Haynes T, Luz-Madrigal A, Reis ES, Echeverri Ruiz NP, Grajales-Esquivel E, Tzekou A, Tsonis PA, Lambris JD, Del Rio-Tsonis K.

Nat Commun. 2013;4:2312. doi: 10.1038/ncomms3312.

22.

Intrinsic lens forming potential of mouse lens epithelial versus newt iris pigment epithelial cells in three-dimensional culture.

Hoffmann A, Nakamura K, Tsonis PA.

Tissue Eng Part C Methods. 2014 Feb;20(2):91-103. doi: 10.1089/ten.TEC.2013.0078. Epub 2013 Jul 10.

23.

Transcriptome analysis of newt lens regeneration reveals distinct gradients in gene expression patterns.

Sousounis K, Looso M, Maki N, Ivester CJ, Braun T, Tsonis PA.

PLoS One. 2013 Apr 16;8(4):e61445. doi: 10.1371/journal.pone.0061445. Print 2013.

24.

Salamander Hox clusters contain repetitive DNA and expanded non-coding regions: a typical Hox structure for non-mammalian tetrapod vertebrates?

Voss SR, Putta S, Walker JA, Smith JJ, Maki N, Tsonis PA.

Hum Genomics. 2013 Apr 5;7:9. doi: 10.1186/1479-7364-7-9.

25.

Loss of the six3/6 controlling pathways might have resulted in pinhole-eye evolution in Nautilus.

Ogura A, Yoshida MA, Moritaki T, Okuda Y, Sese J, Shimizu KK, Sousounis K, Tsonis PA.

Sci Rep. 2013;3:1432. doi: 10.1038/srep01432.

26.

A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration.

Looso M, Preussner J, Sousounis K, Bruckskotten M, Michel CS, Lignelli E, Reinhardt R, Höffner S, Krüger M, Tsonis PA, Borchardt T, Braun T.

Genome Biol. 2013 Feb 20;14(2):R16. doi: 10.1186/gb-2013-14-2-r16.

27.

A microarray analysis of gene expression patterns during early phases of newt lens regeneration.

Sousounis K, Michel CS, Bruckskotten M, Maki N, Borchardt T, Braun T, Looso M, Tsonis PA.

Mol Vis. 2013;19:135-45. Epub 2013 Jan 28.

28.

Patterns of gene expression in microarrays and expressed sequence tags from normal and cataractous lenses.

Sousounis K, Tsonis PA.

Hum Genomics. 2012 Sep 1;6:14. doi: 10.1186/1479-7364-6-14.

29.

Conservation of the three-dimensional structure in non-homologous or unrelated proteins.

Sousounis K, Haney CE, Cao J, Sunchu B, Tsonis PA.

Hum Genomics. 2012 Aug 2;6:10. doi: 10.1186/1479-7364-6-10. Review.

30.

Lens regeneration in axolotl: new evidence of developmental plasticity.

Suetsugu-Maki R, Maki N, Nakamura K, Sumanas S, Zhu J, Del Rio-Tsonis K, Tsonis PA.

BMC Biol. 2012 Dec 17;10:103. doi: 10.1186/1741-7007-10-103.

31.

MicroRNA-204-5p regulates epithelial-to-mesenchymal transition during human posterior capsule opacification by targeting SMAD4.

Wang Y, Li W, Zang X, Chen N, Liu T, Tsonis PA, Huang Y.

Invest Ophthalmol Vis Sci. 2013 Jan 14;54(1):323-32. doi: 10.1167/iovs.12-10904.

PMID:
23221074
32.

Lens and retina regeneration: new perspectives from model organisms.

Barbosa-Sabanero K, Hoffmann A, Judge C, Lightcap N, Tsonis PA, Del Rio-Tsonis K.

Biochem J. 2012 Nov 1;447(3):321-34. doi: 10.1042/BJ20120813. Review.

PMID:
23035979
33.

Organ repair and regeneration: an overview.

Baddour JA, Sousounis K, Tsonis PA.

Birth Defects Res C Embryo Today. 2012 Mar;96(1):1-29. doi: 10.1002/bdrc.21006. Review.

PMID:
22457174
34.

5-HT(1A), 5-HT(2A), and 5-HT(2C) receptor mRNA modulation by antidepressant treatment in the chronic mild stress model of depression: sex differences exposed.

Pitychoutis PM, Dalla C, Sideris AC, Tsonis PA, Papadopoulou-Daifoti Z.

Neuroscience. 2012 May 17;210:152-67. doi: 10.1016/j.neuroscience.2012.03.003. Epub 2012 Mar 9.

PMID:
22441040
35.

Implication of the miR-184 and miR-204 competitive RNA network in control of mouse secondary cataract.

Hoffmann A, Huang Y, Suetsugu-Maki R, Ringelberg CS, Tomlinson CR, Del Rio-Tsonis K, Tsonis PA.

Mol Med. 2012 May 9;18:528-38. doi: 10.2119/molmed.2011.00463.

36.

Hybrid carbon-based scaffolds for applications in soft tissue reconstruction.

Czarnecki JS, Lafdi K, Joseph RM, Tsonis PA.

Tissue Eng Part A. 2012 May;18(9-10):946-56. doi: 10.1089/ten.TEA.2011.0533. Epub 2012 Feb 28.

37.

Regenerative capacity in newts is not altered by repeated regeneration and ageing.

Eguchi G, Eguchi Y, Nakamura K, Yadav MC, Millán JL, Tsonis PA.

Nat Commun. 2011 Jul 12;2:384. doi: 10.1038/ncomms1389.

38.

A system for culturing iris pigment epithelial cells to study lens regeneration in newt.

Bhavsar RB, Nakamura K, Tsonis PA.

J Vis Exp. 2011 Jun 22;(52). pii: 2713. doi: 10.3791/2713.

39.

A complement receptor C5a antagonist regulates epithelial to mesenchymal transition and crystallin expression after lens cataract surgery in mice.

Suetsugu-Maki R, Maki N, Fox TP, Nakamura K, Cowper Solari R, Tomlinson CR, Qu H, Lambris JD, Tsonis PA.

Mol Vis. 2011 Apr 19;17:949-64.

40.

Expressing exogenous genes in newts by transgenesis.

Casco-Robles MM, Yamada S, Miura T, Nakamura K, Haynes T, Maki N, Del Rio-Tsonis K, Tsonis PA, Chiba C.

Nat Protoc. 2011 May;6(5):600-8. doi: 10.1038/nprot.2011.334. Epub 2011 Apr 14.

PMID:
21527918
41.

Controlling gene loss of function in newts with emphasis on lens regeneration.

Tsonis PA, Haynes T, Maki N, Nakamura K, Casco-Robles MM, Yamada S, Miura T, Chiba C, Del Rio-Tsonis K.

Nat Protoc. 2011 May;6(5):593-9. doi: 10.1038/nprot.2011.341. Epub 2011 Apr 14.

PMID:
21527917
42.

Traveling backward: de-differentiation to stemness.

Hoffmann A, Tsonis PA.

Mol Interv. 2011 Feb;11(1):15-7. doi: 10.1124/mi.11.1.3. No abstract available.

PMID:
21441117
43.
44.

miRNAs in newt lens regeneration: specific control of proliferation and evidence for miRNA networking.

Nakamura K, Maki N, Trinh A, Trask HW, Gui J, Tomlinson CR, Tsonis PA.

PLoS One. 2010 Aug 11;5(8):e12058. doi: 10.1371/journal.pone.0012058.

45.

The other lives of ribosomal proteins.

Bhavsar RB, Makley LN, Tsonis PA.

Hum Genomics. 2010 Jun;4(5):327-44. Review.

46.

Molecular and cellular aspects of amphibian lens regeneration.

Henry JJ, Tsonis PA.

Prog Retin Eye Res. 2010 Nov;29(6):543-55. doi: 10.1016/j.preteyeres.2010.07.002. Epub 2010 Jul 16.

47.

Oocyte-type linker histone B4 is required for transdifferentiation of somatic cells in vivo.

Maki N, Suetsugu-Maki R, Sano S, Nakamura K, Nishimura O, Tarui H, Del Rio-Tsonis K, Ohsumi K, Agata K, Tsonis PA.

FASEB J. 2010 Sep;24(9):3462-7. doi: 10.1096/fj.10-159285. Epub 2010 May 11.

48.

Focus on molecules: Six3--master or apprentice?

Singh A, Tsonis PA.

Exp Eye Res. 2010 May;90(5):535-6. doi: 10.1016/j.exer.2010.01.009. Epub 2010 Feb 1. No abstract available.

49.

Expression profiles during dedifferentiation in newt lens regeneration revealed by expressed sequence tags.

Maki N, Martinson J, Nishimura O, Tarui H, Meller J, Tsonis PA, Agata K.

Mol Vis. 2010 Jan 18;16:72-8.

50.

Regeneration according to Spallanzani.

Tsonis PA, Fox TP.

Dev Dyn. 2009 Sep;238(9):2357-63. doi: 10.1002/dvdy.22057.

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