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Items: 24

1.

Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments.

Vigneron A, Alsop EB, Cruaud P, Philibert G, King B, Baksmaty L, Lavallee D, Lomans BP, Eloe-Fadrosh E, Kyrpides NC, Head IM, Tsesmetzis N.

mSystems. 2019 Feb 26;4(1). pii: e00091-18. doi: 10.1128/mSystems.00091-18. eCollection 2019 Jan-Feb.

2.

Low-level expression of SAMHD1 in acute myeloid leukemia (AML) blasts correlates with improved outcome upon consolidation chemotherapy with high-dose cytarabine-based regimens.

Rassidakis GZ, Herold N, Myrberg IH, Tsesmetzis N, Rudd SG, Henter JI, Schaller T, Ng SB, Chng WJ, Yan B, Ng CH, Ravandi F, Andreeff M, Kantarjian HM, Medeiros LJ, Xagoraris I, Khoury JD.

Blood Cancer J. 2018 Oct 19;8(11):98. doi: 10.1038/s41408-018-0134-z.

3.

MetaHCR: a web-enabled metagenome data management system for hydrocarbon resources.

Marks PC, Bigler M, Alsop EB, Vigneron A, Lomans BP, De Paula R, Geissler B, Tsesmetzis N.

Database (Oxford). 2018 Jan 1;2018:1-10. doi: 10.1093/database/bay087.

4.

Nucleobase and Nucleoside Analogues: Resistance and Re-Sensitisation at the Level of Pharmacokinetics, Pharmacodynamics and Metabolism.

Tsesmetzis N, Paulin CBJ, Rudd SG, Herold N.

Cancers (Basel). 2018 Jul 23;10(7). pii: E240. doi: 10.3390/cancers10070240. Review.

5.

Beyond the tip of the iceberg; a new view of the diversity of sulfite- and sulfate-reducing microorganisms.

Vigneron A, Cruaud P, Alsop E, de Rezende JR, Head IM, Tsesmetzis N.

ISME J. 2018 Aug;12(8):2096-2099. doi: 10.1038/s41396-018-0155-4. Epub 2018 May 28.

PMID:
29805176
6.

Dynamic bacterial and fungal microbiomes during sweet sorghum ensiling impact bioethanol production.

Gallagher D, Parker D, Allen DJ, Tsesmetzis N.

Bioresour Technol. 2018 Sep;264:163-173. doi: 10.1016/j.biortech.2018.05.053. Epub 2018 May 26.

7.

Damage to offshore production facilities by corrosive microbial biofilms.

Vigneron A, Head IM, Tsesmetzis N.

Appl Microbiol Biotechnol. 2018 Mar;102(6):2525-2533. doi: 10.1007/s00253-018-8808-9. Epub 2018 Feb 8. Review.

PMID:
29423635
8.

Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico.

Vigneron A, Alsop EB, Cruaud P, Philibert G, King B, Baksmaty L, Lavallée D, P Lomans B, Kyrpides NC, Head IM, Tsesmetzis N.

Sci Rep. 2017 Nov 22;7(1):16015. doi: 10.1038/s41598-017-16375-5.

9.

Using genomics for environmental monitoring in the oil and gas industry.

Lyon D, Bröker K, Valente R, Tsesmetzis N.

Integr Environ Assess Manag. 2017 Jul;13(4):797-799. doi: 10.1002/ieam.1921. No abstract available.

PMID:
28613030
10.

Succession in the petroleum reservoir microbiome through an oil field production lifecycle.

Vigneron A, Alsop EB, Lomans BP, Kyrpides NC, Head IM, Tsesmetzis N.

ISME J. 2017 Sep;11(9):2141-2154. doi: 10.1038/ismej.2017.78. Epub 2017 May 19.

11.

Microbial and Isotopic Evidence for Methane Cycling in Hydrocarbon-Containing Groundwater from the Pennsylvania Region.

Vigneron A, Bishop A, Alsop EB, Hull K, Rhodes I, Hendricks R, Head IM, Tsesmetzis N.

Front Microbiol. 2017 Apr 5;8:593. doi: 10.3389/fmicb.2017.00593. eCollection 2017.

12.

PD-L1 is commonly expressed and transcriptionally regulated by STAT3 and MYC in ALK-negative anaplastic large-cell lymphoma.

Atsaves V, Tsesmetzis N, Chioureas D, Kis L, Leventaki V, Drakos E, Panaretakis T, Grander D, Medeiros LJ, Young KH, Rassidakis GZ.

Leukemia. 2017 Jul;31(7):1633-1637. doi: 10.1038/leu.2017.103. Epub 2017 Mar 27. No abstract available.

PMID:
28344319
13.

CD274 (PD-L1)/PDCD1 (PD-1) expression in de novo and transformed diffuse large B-cell lymphoma.

Kwiecinska A, Tsesmetzis N, Ghaderi M, Kis L, Saft L, Rassidakis GZ.

Br J Haematol. 2018 Mar;180(5):744-748. doi: 10.1111/bjh.14432. Epub 2016 Nov 23. No abstract available.

PMID:
27879989
14.

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

Paez-Espino D, Chen IA, Palaniappan K, Ratner A, Chu K, Szeto E, Pillay M, Huang J, Markowitz VM, Nielsen T, Huntemann M, K Reddy TB, Pavlopoulos GA, Sullivan MB, Campbell BJ, Chen F, McMahon K, Hallam SJ, Denef V, Cavicchioli R, Caffrey SM, Streit WR, Webster J, Handley KM, Salekdeh GH, Tsesmetzis N, Setubal JC, Pope PB, Liu WT, Rivers AR, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D457-D465. doi: 10.1093/nar/gkw1030. Epub 2016 Oct 30.

15.

MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources.

Tsesmetzis N, Yilmaz P, Marks PC, Kyrpides NC, Head IM, Lomans BP.

Stand Genomic Sci. 2016 Oct 12;11:78. eCollection 2016.

16.

Preservation of ancestral Cretaceous microflora recovered from a hypersaline oil reservoir.

Gales G, Tsesmetzis N, Neria I, Alazard D, Coulon S, Lomans BP, Morin D, Ollivier B, Borgomano J, Joulian C.

Sci Rep. 2016 Mar 11;6:22960. doi: 10.1038/srep22960.

17.

Complementary Microorganisms in Highly Corrosive Biofilms from an Offshore Oil Production Facility.

Vigneron A, Alsop EB, Chambers B, Lomans BP, Head IM, Tsesmetzis N.

Appl Environ Microbiol. 2016 Apr 4;82(8):2545-2554. doi: 10.1128/AEM.03842-15. Print 2016 Apr.

18.

Potential role of AKT/mTOR signalling proteins in hairy cell leukaemia: association with BRAF/ERK activation and clinical outcome.

Lakiotaki E, Levidou G, Angelopoulou MK, Adamopoulos C, Pangalis G, Rassidakis G, Vassilakopoulos T, Gainaru G, Flevari P, Sachanas S, Saetta AA, Sepsa A, Moschogiannis M, Kalpadakis C, Tsesmetzis N, Milionis V, Chatziandreou I, Thymara I, Panayiotidis P, Dimopoulou M, Plata E, Konstantopoulos K, Patsouris E, Piperi C, Korkolopoulou P.

Sci Rep. 2016 Feb 19;6:21252. doi: 10.1038/srep21252.

19.

Perchlorate and chlorate reduction by the Crenarchaeon Aeropyrum pernix and two thermophilic Firmicutes.

Liebensteiner MG, Pinkse MW, Nijsse B, Verhaert PD, Tsesmetzis N, Stams AJ, Lomans BP.

Environ Microbiol Rep. 2015 Dec;7(6):936-45. doi: 10.1111/1758-2229.12335. Epub 2015 Oct 23.

PMID:
26332065
20.

Microbial redox processes in deep subsurface environments and the potential application of (per)chlorate in oil reservoirs.

Liebensteiner MG, Tsesmetzis N, Stams AJ, Lomans BP.

Front Microbiol. 2014 Sep 1;5:428. doi: 10.3389/fmicb.2014.00428. eCollection 2014. Review.

21.

Arabidopsis reactome: a foundation knowledgebase for plant systems biology.

Tsesmetzis N, Couchman M, Higgins J, Smith A, Doonan JH, Seifert GJ, Schmidt EE, Vastrik I, Birney E, Wu G, D'Eustachio P, Stein LD, Morris RJ, Bevan MW, Walsh SV.

Plant Cell. 2008 Jun;20(6):1426-36. doi: 10.1105/tpc.108.057976. Epub 2008 Jun 30. No abstract available.

22.

Subcellular localisation of Medicago truncatula 9/13-hydroperoxide lyase reveals a new localisation pattern and activation mechanism for CYP74C enzymes.

De Domenico S, Tsesmetzis N, Di Sansebastiano GP, Hughes RK, Casey R, Santino A.

BMC Plant Biol. 2007 Nov 5;7:58.

23.

The gateway pDEST17 expression vector encodes a -1 ribosomal frameshifting sequence.

Belfield EJ, Hughes RK, Tsesmetzis N, Naldrett MJ, Casey R.

Nucleic Acids Res. 2007;35(4):1322-32. Epub 2007 Jan 31.

24.

Molecular cloning and characterization of an almond 9-hydroperoxide lyase, a new CYP74 targeted to lipid bodies.

Mita G, Quarta A, Fasano P, De Paolis A, Di Sansebastiano GP, Perrotta C, Iannacone R, Belfield E, Hughes R, Tsesmetzis N, Casey R, Santino A.

J Exp Bot. 2005 Sep;56(419):2321-33. Epub 2005 Jul 12.

PMID:
16014368

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