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Items: 1 to 50 of 339

1.

Transcriptome Characterization of Matched Primary Breast and Brain Metastatic Tumors to Detect Novel Actionable Targets.

Varešlija D, Priedigkeit N, Fagan A, Purcell S, Cosgrove N, O'Halloran PJ, Ward E, Cocchiglia S, Hartmaier R, Castro CA, Zhu L, Tseng GC, Lucas PC, Puhalla SL, Brufsky AM, Hamilton RL, Mathew A, Leone JP, Basudan A, Hudson L, Dwyer R, Das S, O'Connor DP, Buckley PG, Farrell M, Hill ADK, Oesterreich S, Lee AV, Young LS.

J Natl Cancer Inst. 2018 Jun 28. doi: 10.1093/jnci/djy110. [Epub ahead of print]

PMID:
29961873
2.

Improved identification of concordant and discordant gene expression signatures using an updated rank-rank hypergeometric overlap approach.

Cahill KM, Huo Z, Tseng GC, Logan RW, Seney ML.

Sci Rep. 2018 Jun 25;8(1):9588. doi: 10.1038/s41598-018-27903-2.

3.

Pars plana insertion of glaucoma shunt in eyes with refractory neovascular glaucoma: Case report.

Yen CY, Tseng GL.

Medicine (Baltimore). 2018 Jun;97(23):e10977. doi: 10.1097/MD.0000000000010977.

4.

Invasive lobular and ductal breast carcinoma differ in immune response, protein translation efficiency and metabolism.

Du T, Zhu L, Levine KM, Tasdemir N, Lee AV, Vignali DAA, Houten BV, Tseng GC, Oesterreich S.

Sci Rep. 2018 May 8;8(1):7205. doi: 10.1038/s41598-018-25357-0.

5.

Opposite Molecular Signatures of Depression in Men and Women.

Seney ML, Huo Z, Cahill K, French L, Puralewski R, Zhang J, Logan RW, Tseng G, Lewis DA, Sibille E.

Biol Psychiatry. 2018 Jul 1;84(1):18-27. doi: 10.1016/j.biopsych.2018.01.017. Epub 2018 Feb 19.

PMID:
29548746
6.

Effectiveness and confounding factors of penetrating astigmatic keratotomy in clinical practice: Case report.

Yen CY, Tseng GL.

Medicine (Baltimore). 2018 Jan;97(4):e9709. doi: 10.1097/MD.0000000000009709.

7.

Listeria monocytogenes endocarditis: case report, review of the literature, and laboratory evaluation of potential novel antibiotic synergies.

Kumaraswamy M, Do C, Sakoulas G, Nonejuie P, Tseng GW, King H, Fierer J, Pogliano J, Nizet V.

Int J Antimicrob Agents. 2018 Mar;51(3):468-478. doi: 10.1016/j.ijantimicag.2017.12.032. Epub 2018 Jan 11.

PMID:
29337066
8.

Meta-analytic principal component analysis in integrative omics application.

Kim S, Kang D, Huo Z, Park Y, Tseng GC.

Bioinformatics. 2018 Apr 15;34(8):1321-1328. doi: 10.1093/bioinformatics/btx765.

PMID:
29186328
9.

Transcriptome alterations of prefrontal cortical parvalbumin neurons in schizophrenia.

Enwright Iii JF, Huo Z, Arion D, Corradi JP, Tseng G, Lewis DA.

Mol Psychiatry. 2017 Nov 7. doi: 10.1038/mp.2017.216. [Epub ahead of print]

10.

Mini-Scleral Lenses for Correction of Refractive Errors After Radial Keratotomy.

Chu HS, Wang IJ, Tseng GA, Chen WL, Hou YC, Hu FR.

Eye Contact Lens. 2017 Oct 11. doi: 10.1097/ICL.0000000000000437. [Epub ahead of print]

PMID:
29023313
11.

Integrative Sparse K-Means With Overlapping Group Lasso in Genomic Applications for Disease Subtype Discovery.

Huo Z, Tseng G.

Ann Appl Stat. 2017 Jun;11(2):1011-1039. doi: 10.1214/17-AOAS1033. Epub 2017 Jul 20.

12.

Sustained Molecular Pathology Across Episodes and Remission in Major Depressive Disorder.

Scifo E, Pabba M, Kapadia F, Ma T, Lewis DA, Tseng GC, Sibille E.

Biol Psychiatry. 2018 Jan 1;83(1):81-89. doi: 10.1016/j.biopsych.2017.08.008. Epub 2017 Aug 18.

PMID:
28935211
13.

Surgical treatment of neovascular glaucoma with Ex-PRESS glaucoma shunt: Case report.

Yu TC, Tseng GL, Chen CC, Liou SW.

Medicine (Baltimore). 2017 Sep;96(35):e7845. doi: 10.1097/MD.0000000000007845.

14.

Cortical compression rapidly trimmed transcallosal projections and altered axonal anterograde transport machinery.

Chen LJ, Wang YJ, Tseng GF.

Neuroscience. 2017 Oct 24;362:79-94. doi: 10.1016/j.neuroscience.2017.08.020. Epub 2017 Aug 19.

PMID:
28827177
15.

Biomarker detection and categorization in ribonucleic acid sequencing meta-analysis using Bayesian hierarchical models.

Ma T, Liang F, Tseng G.

J R Stat Soc Ser C Appl Stat. 2017 Aug;66(4):847-867. doi: 10.1111/rssc.12199. Epub 2016 Dec 16.

PMID:
28785119
16.

Resilient protein co-expression network in male orbitofrontal cortex layer 2/3 during human aging.

Pabba M, Scifo E, Kapadia F, Nikolova YS, Ma T, Mechawar N, Tseng GC, Sibille E.

Neurobiol Aging. 2017 Oct;58:180-190. doi: 10.1016/j.neurobiolaging.2017.06.023. Epub 2017 Jul 5.

PMID:
28750307
17.

Comparing the effects of afatinib with gefitinib or Erlotinib in patients with advanced-stage lung adenocarcinoma harboring non-classical epidermal growth factor receptor mutations.

Shen YC, Tseng GC, Tu CY, Chen WC, Liao WC, Chen WC, Li CH, Chen HJ, Hsia TC.

Lung Cancer. 2017 Aug;110:56-62. doi: 10.1016/j.lungcan.2017.06.007. Epub 2017 Jun 13.

PMID:
28676220
18.

Age-Related Gene Expression in the Frontal Cortex Suggests Synaptic Function Changes in Specific Inhibitory Neuron Subtypes.

French L, Ma T, Oh H, Tseng GC, Sibille E.

Front Aging Neurosci. 2017 May 29;9:162. doi: 10.3389/fnagi.2017.00162. eCollection 2017.

19.

Adult Ventricular Myocytes Segregate KCNQ1 and KCNE1 to Keep the IKs Amplitude in Check Until When Larger IKs Is Needed.

Jiang M, Wang Y, Tseng GN.

Circ Arrhythm Electrophysiol. 2017 Jun;10(6). pii: e005084. doi: 10.1161/CIRCEP.117.005084.

20.

A Joint Bayesian Model for Integrating Microarray and RNA Sequencing Transcriptomic Data.

Ma T, Liang F, Oesterreich S, Tseng GC.

J Comput Biol. 2017 Jul;24(7):647-662. doi: 10.1089/cmb.2017.0056. Epub 2017 May 25.

21.
22.

Multiplex profiling identifies distinct local and systemic alterations during intraperitoneal chemotherapy for ovarian cancer: An NRG Oncology/Gynecologic Oncology Group Study.

Grabosch S, Tseng G, Edwards RP, Lankes HA, Moore K, Odunsi K, Vlad A, Ma T, Strange M, Brozick J, Lugade A, Omilian A, Bshara W, Stuckey AR, Walker JL, Birrer M.

Gynecol Oncol. 2017 Jul;146(1):137-145. doi: 10.1016/j.ygyno.2017.04.008. Epub 2017 May 5.

23.

Oncogenic activity of amplified miniature chromosome maintenance 8 in human malignancies.

He DM, Ren BG, Liu S, Tan LZ, Cieply K, Tseng G, Yu YP, Luo JH.

Oncogene. 2017 Jun 22;36(25):3629-3639. doi: 10.1038/onc.2017.123. Epub 2017 May 8.

24.

Transcriptome Alterations in Prefrontal Pyramidal Cells Distinguish Schizophrenia From Bipolar and Major Depressive Disorders.

Arion D, Huo Z, Enwright JF, Corradi JP, Tseng G, Lewis DA.

Biol Psychiatry. 2017 Oct 15;82(8):594-600. doi: 10.1016/j.biopsych.2017.03.018. Epub 2017 Apr 4.

PMID:
28476208
25.

Targeting genomic rearrangements in tumor cells through Cas9-mediated insertion of a suicide gene.

Chen ZH, Yu YP, Zuo ZH, Nelson JB, Michalopoulos GK, Monga S, Liu S, Tseng G, Luo JH.

Nat Biotechnol. 2017 Jun;35(6):543-550. doi: 10.1038/nbt.3843. Epub 2017 May 1.

26.

Effects of epidural compression on stellate neurons and thalamocortical afferent fibers in the rat primary somatosensory cortex.

Yeh TY, Tseng GF, Tseng CY, Huang YH, Liu PH.

Acta Neurobiol Exp (Wars). 2017;77(1):1-17.

27.

Meta-analytic framework for liquid association.

Wang L, Liu S, Ding Y, Yuan SS, Ho YY, Tseng GC.

Bioinformatics. 2017 Jul 15;33(14):2140-2147. doi: 10.1093/bioinformatics/btx138.

PMID:
28334340
28.

MAN2A1-FER Fusion Gene Is Expressed by Human Liver and Other Tumor Types and Has Oncogenic Activity in Mice.

Chen ZH, Yu YP, Tao J, Liu S, Tseng G, Nalesnik M, Hamilton R, Bhargava R, Nelson JB, Pennathur A, Monga SP, Luketich JD, Michalopoulos GK, Luo JH.

Gastroenterology. 2017 Oct;153(4):1120-1132.e15. doi: 10.1053/j.gastro.2016.12.036. Epub 2017 Feb 27.

PMID:
28245430
29.

Active Estrogen Receptor-alpha Signaling in Ovarian Cancer Models and Clinical Specimens.

Andersen CL, Sikora MJ, Boisen MM, Ma T, Christie A, Tseng G, Park Y, Luthra S, Chandran U, Haluska P, Mantia-Smaldone GM, Odunsi K, McLean K, Lee AV, Elishaev E, Edwards RP, Oesterreich S.

Clin Cancer Res. 2017 Jul 15;23(14):3802-3812. doi: 10.1158/1078-0432.CCR-16-1501. Epub 2017 Jan 10.

30.

MetaDCN: meta-analysis framework for differential co-expression network detection with an application in breast cancer.

Zhu L, Ding Y, Chen CY, Wang L, Huo Z, Kim S, Sotiriou C, Oesterreich S, Tseng GC.

Bioinformatics. 2017 Apr 15;33(8):1121-1129. doi: 10.1093/bioinformatics/btw788.

31.

Differential regulation of glial reactions in the central facial tract and the facial nucleus after facial neurorrhaphy.

Yeh TY, Wang SM, Tseng GF, Liu PH.

J Chem Neuroanat. 2017 Jan;79:38-50. doi: 10.1016/j.jchemneu.2016.11.005. Epub 2016 Nov 16.

PMID:
27865907
32.

Enhanced Molecular Aging in Late-Life Depression: the Senescent-Associated Secretory Phenotype.

Diniz BS, Reynolds CF 3rd, Sibille E, Lin CW, Tseng G, Lotrich F, Aizenstein HJ, Butters MA.

Am J Geriatr Psychiatry. 2017 Jan;25(1):64-72. doi: 10.1016/j.jagp.2016.08.018. Epub 2016 Aug 31.

33.

Reproductive experience modified dendritic spines on cortical pyramidal neurons to enhance sensory perception and spatial learning in rats.

Chen JR, Lim SH, Chung SC, Lee YF, Wang YJ, Tseng GF, Wang TJ.

Exp Anim. 2017 Jan 27;66(1):61-74. doi: 10.1538/expanim.16-0061. Epub 2016 Oct 25.

34.

Combined systemic elimination of MET and epidermal growth factor receptor signaling completely abolishes liver regeneration and leads to liver decompensation.

Paranjpe S, Bowen WC, Mars WM, Orr A, Haynes MM, DeFrances MC, Liu S, Tseng GC, Tsagianni A, Michalopoulos GK.

Hepatology. 2016 Nov;64(5):1711-1724. doi: 10.1002/hep.28721. Epub 2016 Oct 1.

35.

Evaluation of high myopia complications prevention program in university freshmen.

Tseng GL, Chen CY.

Medicine (Baltimore). 2016 Oct;95(40):e5093.

36.

27-GAUGE NEEDLE-ASSISTED TECHNIQUE FOR REPOSITIONING A DISLOCATED INTRAOCULAR LENS.

Li PH, Tseng GL, Wu SC, Liou SW.

Retina. 2016 Sep;36(9):1791-5. doi: 10.1097/IAE.0000000000001139.

PMID:
27552255
37.

Integrative clustering of multi-level omics data for disease subtype discovery using sequential double regularization.

Kim S, Oesterreich S, Kim S, Park Y, Tseng GC.

Biostatistics. 2017 Jan;18(1):165-179. doi: 10.1093/biostatistics/kxw039. Epub 2016 Aug 22.

38.

Statistical Methods in Integrative Genomics.

Richardson S, Tseng GC, Sun W.

Annu Rev Stat Appl. 2016 Jun;3:181-209. Epub 2016 Apr 18.

39.

Age-dependent increase in Kalirin-9 and Kalirin-12 transcripts in human orbitofrontal cortex.

Grubisha MJ, Lin CW, Tseng GC, Penzes P, Sibille E, Sweet RA.

Eur J Neurosci. 2016 Oct;44(7):2483-2492. doi: 10.1111/ejn.13351. Epub 2016 Aug 18.

40.

Circulating biosignatures of late-life depression (LLD): Towards a comprehensive, data-driven approach to understanding LLD pathophysiology.

Diniz BS, Lin CW, Sibille E, Tseng G, Lotrich F, Aizenstein HJ, Reynolds CF, Butters MA.

J Psychiatr Res. 2016 Nov;82:1-7. doi: 10.1016/j.jpsychires.2016.07.006. Epub 2016 Jul 11.

PMID:
27447786
41.

Predisposition to treatment response in major depressive episode: A peripheral blood gene coexpression network analysis.

Belzeaux R, Lin CW, Ding Y, Bergon A, Ibrahim EC, Turecki G, Tseng G, Sibille E.

J Psychiatr Res. 2016 Oct;81:119-26. doi: 10.1016/j.jpsychires.2016.07.009. Epub 2016 Jul 9.

PMID:
27438688
42.

Hydrocephalus compacted cortex and hippocampus and altered their output neurons in association with spatial learning and memory deficits in rats.

Chen LJ, Wang YJ, Chen JR, Tseng GF.

Brain Pathol. 2017 Jul;27(4):419-436. doi: 10.1111/bpa.12414. Epub 2016 Aug 15.

PMID:
27411167
43.

Meta-analytic framework for sparse K-means to identify disease subtypes in multiple transcriptomic studies.

Huo Z, Ding Y, Liu S, Oesterreich S, Tseng G.

J Am Stat Assoc. 2016;111(513):27-42. Epub 2016 May 5.

44.

MetaKTSP: a meta-analytic top scoring pair method for robust cross-study validation of omics prediction analysis.

Kim S, Lin CW, Tseng GC.

Bioinformatics. 2016 Jul 1;32(13):1966-73. doi: 10.1093/bioinformatics/btw115. Epub 2016 Mar 2.

PMID:
27153719
45.

Rostral Intralaminar Thalamic Deep Brain Stimulation Triggered Cortical and Hippocampal Structural Plasticity and Enhanced Spatial Memory.

Tsai ST, Chen LJ, Wang YJ, Chen SY, Tseng GF.

Stereotact Funct Neurosurg. 2016;94(2):108-17. doi: 10.1159/000444759. Epub 2016 Apr 20.

PMID:
27093561
46.

Effects of Kras activation and Pten deletion alone or in combination on MUC1 biology and epithelial-to-mesenchymal transition in ovarian cancer.

Zhang L, Ma T, Brozick J, Babalola K, Budiu R, Tseng G, Vlad AM.

Oncogene. 2016 Sep 22;35(38):5010-20. doi: 10.1038/onc.2016.53. Epub 2016 Mar 14.

47.

High expression of orphan nuclear receptor NR4A1 in a subset of ovarian tumors with worse outcome.

Delgado E, Boisen MM, Laskey R, Chen R, Song C, Sallit J, Yochum ZA, Andersen CL, Sikora MJ, Wagner J, Safe S, Elishaev E, Lee A, Edwards RP, Haluska P, Tseng G, Schurdak M, Oesterreich S.

Gynecol Oncol. 2016 May;141(2):348-356. doi: 10.1016/j.ygyno.2016.02.030. Epub 2016 Mar 11.

48.

Polymorphisms in ╬▒-Defensin-Encoding DEFA1A3 Associate with Urinary Tract Infection Risk in Children with Vesicoureteral Reflux.

Schwaderer AL, Wang H, Kim S, Kline JM, Liang D, Brophy PD, McHugh KM, Tseng GC, Saxena V, Barr-Beare E, Pierce KR, Shaikh N, Manak JR, Cohen DM, Becknell B, Spencer JD, Baker PB, Yu CY, Hains DS.

J Am Soc Nephrol. 2016 Oct;27(10):3175-3186. Epub 2016 Mar 3.

49.

A computational method for genotype calling in family-based sequencing data.

Chang LC, Li B, Fang Z, Vrieze S, McGue M, Iacono WG, Tseng GC, Chen W.

BMC Bioinformatics. 2016 Jan 16;17:37. doi: 10.1186/s12859-016-0880-5.

50.

Regionally Smoothed Meta-Analysis Methods for GWAS Datasets.

Begum F, Sharker MH, Sherman SL, Tseng GC, Feingold E.

Genet Epidemiol. 2016 Feb;40(2):154-60. doi: 10.1002/gepi.21949. Epub 2015 Dec 28.

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