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Items: 28

1.

Somatic expression of piRNA and associated machinery in the mouse identifies short, tissue-specific piRNA.

Perera BPU, Tsai ZT, Colwell ML, Jones TR, Goodrich JM, Wang K, Sartor MA, Faulk C, Dolinoy DC.

Epigenetics. 2019 May;14(5):504-521. doi: 10.1080/15592294.2019.1600389. Epub 2019 Apr 8.

PMID:
30955436
2.

Borders of Cis-Regulatory DNA Sequences Preferentially Harbor the Divergent Transcription Factor Binding Motifs in the Human Genome.

Huang JH, Kwan RS, Tsai ZT, Lin TC, Tsai HK.

Front Genet. 2018 Nov 22;9:571. doi: 10.3389/fgene.2018.00571. eCollection 2018.

3.

A Model-Based Approach for Identifying Functional Intergenic Transcribed Regions and Noncoding RNAs.

Lloyd JP, Tsai ZT, Sowers RP, Panchy NL, Shiu SH.

Mol Biol Evol. 2018 Jun 1;35(6):1422-1436. doi: 10.1093/molbev/msy035.

PMID:
29554332
4.

The NIEHS TaRGET II Consortium and environmental epigenomics.

Wang T, Pehrsson EC, Purushotham D, Li D, Zhuo X, Zhang B, Lawson HA, Province MA, Krapp C, Lan Y, Coarfa C, Katz TA, Tang WY, Wang Z, Biswal S, Rajagopalan S, Colacino JA, Tsai ZT, Sartor MA, Neier K, Dolinoy DC, Pinto J, Hamanaka RB, Mutlu GM, Patisaul HB, Aylor DL, Crawford GE, Wiltshire T, Chadwick LH, Duncan CG, Garton AE, McAllister KA; TaRGET II Consortium, Bartolomei MS, Walker CL, Tyson FL.

Nat Biotechnol. 2018 Mar 6;36(3):225-227. doi: 10.1038/nbt.4099. No abstract available.

5.

Comparative genomic analyses highlight the contribution of pseudogenized protein-coding genes to human lincRNAs.

Liu WH, Tsai ZT, Tsai HK.

BMC Genomics. 2017 Oct 16;18(1):786. doi: 10.1186/s12864-017-4156-x.

6.

Defining Functional Genic Regions in the Human Genome through Integration of Biochemical, Evolutionary, and Genetic Evidence.

Tsai ZT, Lloyd JP, Shiu SH.

Mol Biol Evol. 2017 Jul 1;34(7):1788-1798. doi: 10.1093/molbev/msx101.

PMID:
28398576
7.

Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast.

Tsai ZT, Shiu SH, Tsai HK.

PLoS Comput Biol. 2015 Aug 20;11(8):e1004418. doi: 10.1371/journal.pcbi.1004418. eCollection 2015 Aug.

8.

Genome-wide analysis of enhancer RNA in gene regulation across 12 mouse tissues.

Cheng JH, Pan DZ, Tsai ZT, Tsai HK.

Sci Rep. 2015 Jul 29;5:12648. doi: 10.1038/srep12648.

9.

The CrdRS two-component system in Helicobacter pylori responds to nitrosative stress.

Hung CL, Cheng HH, Hsieh WC, Tsai ZT, Tsai HK, Chu CH, Hsieh WP, Chen YF, Tsou Y, Lai CH, Wang WC.

Mol Microbiol. 2015 Sep;97(6):1128-41. doi: 10.1111/mmi.13089. Epub 2015 Jul 22.

10.

Determinants of nucleosome positioning and their influence on plant gene expression.

Liu MJ, Seddon AE, Tsai ZT, Major IT, Floer M, Howe GA, Shiu SH.

Genome Res. 2015 Aug;25(8):1182-95. doi: 10.1101/gr.188680.114. Epub 2015 Jun 10.

11.

Role of antisense RNAs in evolution of yeast regulatory complexity.

Lin CH, Tsai ZT, Wang D.

Genomics. 2013 Nov-Dec;102(5-6):484-90. doi: 10.1016/j.ygeno.2013.10.008. Epub 2013 Nov 5.

12.

Associations between intronic non-B DNA structures and exon skipping.

Tsai ZT, Chu WY, Cheng JH, Tsai HK.

Nucleic Acids Res. 2014 Jan;42(2):739-47. doi: 10.1093/nar/gkt939. Epub 2013 Oct 22.

13.

Magnetic resonance imaging of mouse islet grafts labeled with novel chitosan-coated superparamagnetic iron oxide nanoparticles.

Juang JH, Shen CR, Wang JJ, Kuo CH, Chien YW, Kuo HY, Chen FR, Chen MH, Yen TC, Tsai ZT.

PLoS One. 2013 Apr 29;8(4):e62626. doi: 10.1371/journal.pone.0062626. Print 2013.

14.

The impact of trans-regulation on the evolutionary rates of metazoan proteins.

Chen YC, Cheng JH, Tsai ZT, Tsai HK, Chuang TJ.

Nucleic Acids Res. 2013 Jul;41(13):6371-80. doi: 10.1093/nar/gkt349. Epub 2013 May 8.

15.

Evolution of cis-regulatory elements in yeast de novo and duplicated new genes.

Tsai ZT, Tsai HK, Cheng JH, Lin CH, Tsai YF, Wang D.

BMC Genomics. 2012 Dec 21;13:717. doi: 10.1186/1471-2164-13-717.

16.
17.

Analysis of the association between transcription factor binding site variants and distinct accompanying regulatory motifs in yeast.

Chiang S, Swamy KB, Hsu TW, Tsai ZT, Lu HH, Wang D, Tsai HK.

Gene. 2012 Jan 10;491(2):237-45. doi: 10.1016/j.gene.2011.08.028. Epub 2011 Sep 16.

PMID:
21963994
18.

Magnetic resonance imaging study of mouse islet allotransplantation.

Juang JH, Shen CR, Wang JJ, Kuo CH, Lin MY, Wu ST, Tsai ZT, Yen TC.

Transplant Proc. 2010 Dec;42(10):4217-20. doi: 10.1016/j.transproceed.2010.09.089.

PMID:
21168668
19.

Magnetic resonance imaging of transplanted mouse islets labeled with chitosan-coated superparamagnetic iron oxide nanoparticles.

Juang JH, Wang JJ, Shen CR, Kuo CH, Chien YW, Kuo HY, Tsai ZT, Yen TC.

Transplant Proc. 2010 Jul-Aug;42(6):2104-8. doi: 10.1016/j.transproceed.2010.05.103.

PMID:
20692419
20.

Impact of DNA-binding position variants on yeast gene expression.

Swamy KB, Cho CY, Chiang S, Tsai ZT, Tsai HK.

Nucleic Acids Res. 2009 Nov;37(21):6991-7001. doi: 10.1093/nar/gkp743.

21.

Rhenium-188 microspheres: a new radiation synovectomy agent.

Wang SJ, Lin WY, Chen MN, Hsieh BT, Shen LH, Tsai ZT, Ting G, Chen JT, Ho WL, Mirzadeh S, Knapp FF Jr.

Nucl Med Commun. 1998 May;19(5):427-33.

PMID:
9853331
22.

Intratumoral injection of rhenium-188 microspheres into an animal model of hepatoma.

Wang SJ, Lin WY, Chen MN, Chi CS, Chen JT, Ho WL, Hsieh BT, Shen LH, Tsai ZT, Ting G, Mirzadeh S, Knapp FF Jr.

J Nucl Med. 1998 Oct;39(10):1752-7.

23.

Rhenium-188 hydroxyethylidene diphosphonate: a new generator-produced radiotherapeutic drug of potential value for the treatment of bone metastases.

Lin WY, Lin CP, Yeh SJ, Hsieh BT, Tsai ZT, Ting G, Yen TC, Wang SJ, Knapp FF Jr, Stabin MG.

Eur J Nucl Med. 1997 Jun;24(6):590-5.

PMID:
9169563
24.

Radiolabelling of Lipiodol with generator-produced 188Re for hepatic tumor therapy.

Wang SJ, Lin WY, Chen MN, Hsieh BT, Shen LH, Tsai ZT, Ting G, Knapp FF Jr.

Appl Radiat Isot. 1996 Mar;47(3):267-71.

PMID:
8935963
25.

Hepatic artery injection of Yttrium-90-lipiodol: biodistribution in rats with hepatoma.

Wang SJ, Lin WY, Lui WY, Chen MN, Tsai ZT, Ting G.

J Nucl Med. 1996 Feb;37(2):332-5.

26.

Biodistribution of rhenium-188 Lipiodol infused via the hepatic artery of rats with hepatic tumours.

Wang SJ, Lin WY, Chen MN, Hsieh BT, Shen LH, Tsai ZT, Ting G, Knapp FF Jr.

Eur J Nucl Med. 1996 Jan;23(1):13-7.

PMID:
8586096
27.

Rhenium-188 sulphur colloid as a radiation synovectomy agent.

Wang SJ, Lin WY, Hsieh BT, Shen LH, Tsai ZT, Ting G, Knapp FF Jr.

Eur J Nucl Med. 1995 Jun;22(6):505-7.

PMID:
7556293
28.

Preparation and biodistribution of yttrium-90 Lipiodol in rats following hepatic arterial injection.

Wang SJ, Lin WY, Chen MN, Shen LH, Tsai ZT, Ting G.

Eur J Nucl Med. 1995 Mar;22(3):233-6.

PMID:
7789396

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