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Compensatory guaiacyl lignin biosynthesis at the expense of syringyl lignin in 4CL1-knockout poplar.

Tsai CJ, Xu P, Xue LJ, Hu H, Nyamdari B, Naran R, Zhou X, Goeminne G, Gao R, Gjersing E, Dahlen J, Pattathil S, Hahn MG, Davis M, Ralph J, Boerjan WA, Harding SA.

Plant Physiol. 2020 Mar 5. pii: pp.01550.2019. doi: 10.1104/pp.19.01550. [Epub ahead of print]


Outcomes and toxicities of definitive radiotherapy and reirradiation using 3-dimensional conformal or intensity-modulated (pencil beam) proton therapy for patients with nasal cavity and paranasal sinus malignancies.

Fan M, Kang JJ, Lee A, Fan D, Wang H, Kitpanit S, Fox P, Sine K, Mah D, McBride SM, Tsai CJ, Riaz N, Dunn LA, Sherman EJ, Michel L, Singh B, Ganly I, Wong RJ, Boyle JO, Cohen MA, Lee NY.

Cancer. 2020 Feb 25. doi: 10.1002/cncr.32776. [Epub ahead of print]


HMI-PRED: A Web Server for Structural Prediction of Host-Microbe Interactions Based on Interface Mimicry.

Guven-Maiorov E, Hakouz A, Valjevac S, Keskin O, Tsai CJ, Gursoy A, Nussinov R.

J Mol Biol. 2020 Feb 13. pii: S0022-2836(20)30089-9. doi: 10.1016/j.jmb.2020.01.025. [Epub ahead of print]


Long-term outcome and prognostic factors of single-dose Radioiodine Therapy in patients with Graves' disease.

Yang YT, Chen JF, Tung SC, Kuo MC, Weng SW, Chou CK, Shen FC, Chang CM, Tsai CJ, Taso CF, Wang PW.

J Formos Med Assoc. 2020 Feb 10. pii: S0929-6646(20)30018-8. doi: 10.1016/j.jfma.2020.01.014. [Epub ahead of print]


Ras assemblies and signaling at the membrane.

Nussinov R, Tsai CJ, Jang H.

Curr Opin Struct Biol. 2020 Feb 4;62:140-148. doi: 10.1016/ [Epub ahead of print] Review.


Oncogenic K-Ras4B Dimerization Enhances Downstream Mitogen-activated Protein Kinase Signaling.

Muratcioglu S, Aydin C, Odabasi E, Ozdemir ES, Firat-Karalar EN, Jang H, Tsai CJ, Nussinov R, Kavakli IH, Gursoy A, Keskin O.

J Mol Biol. 2020 Feb 14;432(4):1199-1215. doi: 10.1016/j.jmb.2020.01.002. Epub 2020 Jan 10.


Autoinhibition can identify rare driver mutations and advise pharmacology.

Nussinov R, Tsai CJ, Jang H.

FASEB J. 2020 Jan;34(1):16-29. doi: 10.1096/fj.201901341R. Epub 2019 Nov 22. Review.


Getting insight into the influence of coexisting airborne nanoparticles on gas adsorption performance over porous materials.

Xing Y, Cui Y, Li Z, Liu Y, Bao D, Su W, Tsai CJ, Tseng CH, Shiue A, Pui DYH, Yang RT.

J Hazard Mater. 2020 Mar 15;386:121928. doi: 10.1016/j.jhazmat.2019.121928. Epub 2019 Dec 19.


Oncoviruses Can Drive Cancer by Rewiring Signaling Pathways Through Interface Mimicry.

Guven-Maiorov E, Tsai CJ, Nussinov R.

Front Oncol. 2019 Nov 15;9:1236. doi: 10.3389/fonc.2019.01236. eCollection 2019.


Does Ras Activate Raf and PI3K Allosterically?

Nussinov R, Tsai CJ, Jang H.

Front Oncol. 2019 Nov 15;9:1231. doi: 10.3389/fonc.2019.01231. eCollection 2019. Review.


Trends and Disparities of Proton Therapy Use among Patients with Head and Neck Cancer: Analysis from the National Cancer Database (2005-14).

Lee A, Kang J, Yu Y, McBride S, Riaz N, Cohen M, Sherman E, Michel L, Lee N, Tsai CJ.

Int J Part Ther. 2019 Spring;5(4):1-10. doi: 10.14338/IJPT-19-00051.1. Epub 2019 Apr 22.


Dynamic Protein Allosteric Regulation and Disease.

Nussinov R, Tsai CJ, Jang H.

Adv Exp Med Biol. 2019;1163:25-43. doi: 10.1007/978-981-13-8719-7_2. Review.


Why Are Some Driver Mutations Rare?

Nussinov R, Tsai CJ, Jang H.

Trends Pharmacol Sci. 2019 Dec;40(12):919-929. doi: 10.1016/ Epub 2019 Nov 5. Review.


Long-term survival in patients with metastatic head and neck squamous cell carcinoma treated with metastasis-directed therapy.

Beckham TH, Leeman JE, Xie P, Li X, Goldman DA, Zhang Z, Sherman E, McBride S, Riaz N, Lee N, Tsai CJ.

Br J Cancer. 2019 Nov;121(11):897-903. doi: 10.1038/s41416-019-0601-8. Epub 2019 Oct 25.


Platinum-based regimens versus cetuximab in definitive chemoradiation for human papillomavirus-unrelated head and neck cancer.

Beckham TH, Barney C, Healy E, Wolfe AR, Branstetter A, Yaney A, Riaz N, McBride SM, Tsai CJ, Kang J, Yu Y, Chen L, Sherman E, Dunn L, Pfister DG, Tan J, Rupert R, Bonomi M, Zhang Z, Lobaugh SM, Grecula JC, Mitchell DL, Wobb JL, Miller ED, Blakaj DM, Diavolitsis VM, Lee N, Bhatt AD.

Int J Cancer. 2019 Oct 14. doi: 10.1002/ijc.32736. [Epub ahead of print]


Outcomes of multimodal therapy in a large series of patients with anaplastic thyroid cancer.

Fan D, Ma J, Bell AC, Groen AH, Olsen KS, Lok BH, Leeman JE, Anderson E, Riaz N, McBride S, Ganly I, Shaha AR, Sherman EJ, Tsai CJ, Kang JJ, Lee NY.

Cancer. 2020 Jan 15;126(2):444-452. doi: 10.1002/cncr.32548. Epub 2019 Oct 8.


Comparative outcomes of catheter-directed thrombolysis plus rivaroxaban vs rivaroxaban alone in patients with acute iliofemoral deep vein thrombosis.

Tsai CJ, Lee CY.

J Chin Med Assoc. 2019 Dec;82(12):902-908. doi: 10.1097/JCMA.0000000000000206.


Investigation of a Novel Decision Support Metric for Head and Neck Adaptive Radiation Therapy Using a Real-Time In Vivo Portal Dosimetry System.

Lim SB, Tsai CJ, Yu Y, Greer P, Fuangrod T, Hwang K, Fontenla S, Coffman F, Lee N, Lovelock DM.

Technol Cancer Res Treat. 2019 Jan 1;18:1533033819873629. doi: 10.1177/1533033819873629.


Chinese Herbal Medicine Ganoderma tsugae Displays Potential Anti-Cancer Efficacy on Metastatic Prostate Cancer Cells.

Huang WC, Chang MS, Huang SY, Tsai CJ, Kuo PH, Chang HW, Huang ST, Kuo CL, Lee SL, Kao MC.

Int J Mol Sci. 2019 Sep 8;20(18). pii: E4418. doi: 10.3390/ijms20184418.


Detection of Early Human Papillomavirus-Associated Cancers by Liquid Biopsy.

Damerla RR, Lee NY, You D, Soni R, Shah R, Reyngold M, Katabi N, Wu V, McBride SM, Tsai CJ, Riaz N, Powell SN, Babady NE, Viale A, Higginson DS.

JCO Precis Oncol. 2019;3. doi: 10.1200/PO.18.00276. Epub 2019 Apr 3.


Big Data in Cancer Research: Real-World Resources for Precision Oncology to Improve Cancer Care Delivery.

Tsai CJ, Riaz N, Gomez SL.

Semin Radiat Oncol. 2019 Oct;29(4):306-310. doi: 10.1016/j.semradonc.2019.05.002.


Development of a Novel Shallow Liquid Interface Exposure System for MWCNT Toxicity Assessment.

Tien CY, Li JP, Han D, Li Z, Fu PK, Chen JK, Tsai CJ.

Chem Res Toxicol. 2019 Oct 21;32(10):1925-1939. doi: 10.1021/acs.chemrestox.9b00067. Epub 2019 Sep 16.


Emerging Two-Dimensional Crystallization of Cucurbit[8]uril Complexes: From Supramolecular Polymers to Nanofibers.

Barrio JD, Liu J, Brady RA, Tan CSY, Chiodini S, Ricci M, Fernández-Leiro R, Tsai CJ, Vasileiadi P, Di Michele L, Lairez D, Toprakcioglu C, Scherman OA.

J Am Chem Soc. 2019 Sep 11;141(36):14021-14025. doi: 10.1021/jacs.9b07506. Epub 2019 Aug 28.


Predicting radiation dosimetric distribution in different regions of the jaw in patients receiving radiotherapy for squamous cell carcinoma of the tonsil.

Tsai CJ, Verma N, Owosho AA, Hilden P, Leeman J, Yom S, Huryn JM, Lee NY, Estilo CL.

Head Neck. 2019 Oct;41(10):3604-3611. doi: 10.1002/hed.25883. Epub 2019 Aug 5.


Taiwan's health-care system and administration are independent of China.

Wang ID, Chien WC, Chen KJ, Tsai CJ, Tsai PY.

Lancet. 2019 Oct 26;394(10208):1515. doi: 10.1016/S0140-6736(19)31619-8. Epub 2019 Jul 15. No abstract available.


Cryo-EM structure of the rhodopsin-Gαi-βγ complex reveals binding of the rhodopsin C-terminal tail to the gβ subunit.

Tsai CJ, Marino J, Adaixo R, Pamula F, Muehle J, Maeda S, Flock T, Taylor NM, Mohammed I, Matile H, Dawson RJ, Deupi X, Stahlberg H, Schertler G.

Elife. 2019 Jun 28;8. pii: e46041. doi: 10.7554/eLife.46041.


Protein ensembles link genotype to phenotype.

Nussinov R, Tsai CJ, Jang H.

PLoS Comput Biol. 2019 Jun 20;15(6):e1006648. doi: 10.1371/journal.pcbi.1006648. eCollection 2019 Jun. Review.


Emerging Allosteric Mechanism of EGFR Activation in Physiological and Pathological Contexts.

Tsai CJ, Nussinov R.

Biophys J. 2019 Jul 9;117(1):5-13. doi: 10.1016/j.bpj.2019.05.021. Epub 2019 May 28. Review.


Correction: Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers.

Nussinov R, Jang H, Tsai CJ, Cheng F.

PLoS Comput Biol. 2019 Jun 12;15(6):e1007114. doi: 10.1371/journal.pcbi.1007114. eCollection 2019 Jun.


Microsatellite Instability and Adjuvant Chemotherapy in Stage II Colon Cancer.

Koenig JL, Toesca DAS, Harris JP, Tsai CJ, Haraldsdottir S, Lin AY, Pollom EL, Chang DT.

Am J Clin Oncol. 2019 Jul;42(7):573-580. doi: 10.1097/COC.0000000000000554.


Quantitative evaluation of breast density using a dual-energy technique on a digital breast tomosynthesis system.

Lu KM, Yeh DM, Cao BH, Lin CY, Liang CY, Zhou YB, Tsai CJ.

J Appl Clin Med Phys. 2019 Jun;20(6):170-177. doi: 10.1002/acm2.12618. Epub 2019 May 20.


Publisher Correction: Mucosal vaccination with pili from Group A Streptococcus expressed on Lactococcus lactis generates protective immune responses.

Loh JMS, Lorenz N, Tsai CJ, Khemlani AHJ, Proft T.

Sci Rep. 2019 May 1;9(1):6975. doi: 10.1038/s41598-019-43123-8.


The association between chronic musculoskeletal pain and clinical outcome in chronic kidney disease patients: a prospective cohort study.

Hsu HJ, Wu IW, Hsu KH, Sun CY, Hung MJ, Chen CY, Tsai CJ, Wu MS, Lee CC.

Ren Fail. 2019 Nov;41(1):257-266. doi: 10.1080/0886022X.2019.1596817.


Wearable-Based Mobile Health App in Gastric Cancer Patients for Postoperative Physical Activity Monitoring: Focus Group Study.

Wu JM, Ho TW, Chang YT, Hsu C, Tsai CJ, Lai F, Lin MT.

JMIR Mhealth Uhealth. 2019 Apr 23;7(4):e11989. doi: 10.2196/11989.


Mechanism and pathways underlying the self-sensitized photodegradation of methotrexate under simulated solar irradiation.

Hsu MH, Tsai CJ, Lin AY.

J Hazard Mater. 2019 Jul 5;373:468-475. doi: 10.1016/j.jhazmat.2019.03.095. Epub 2019 Mar 22.


Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers.

Nussinov R, Jang H, Tsai CJ, Cheng F.

PLoS Comput Biol. 2019 Mar 28;15(3):e1006658. doi: 10.1371/journal.pcbi.1006658. eCollection 2019 Mar. Review. Erratum in: PLoS Comput Biol. 2019 Jun 12;15(6):e1007114.


Patterns of Radiotherapy Use and Outcomes in Head and Neck Soft-Tissue Sarcoma in a National Cohort.

Kim JK, Verma N, McBride S, Riaz N, Boyle JO, Spielsinger D, Sabol C, Waldenberg T, Brinkman T, Alektiar K, Lee NY, Tsai CJ.

Laryngoscope. 2020 Jan;130(1):120-127. doi: 10.1002/lary.27901. Epub 2019 Mar 20.


Shared expression of crassulacean acid metabolism (CAM) genes pre-dates the origin of CAM in the genus Yucca.

Heyduk K, Ray JN, Ayyampalayam S, Moledina N, Borland A, Harding SA, Tsai CJ, Leebens-Mack J.

J Exp Bot. 2019 Nov 29;70(22):6597-6609. doi: 10.1093/jxb/erz105.


Computational Structural Biology: Successes, Future Directions, and Challenges.

Nussinov R, Tsai CJ, Shehu A, Jang H.

Molecules. 2019 Feb 12;24(3). pii: E637. doi: 10.3390/molecules24030637. Review.


Allostery in Its Many Disguises: From Theory to Applications.

Wodak SJ, Paci E, Dokholyan NV, Berezovsky IN, Horovitz A, Li J, Hilser VJ, Bahar I, Karanicolas J, Stock G, Hamm P, Stote RH, Eberhardt J, Chebaro Y, Dejaegere A, Cecchini M, Changeux JP, Bolhuis PG, Vreede J, Faccioli P, Orioli S, Ravasio R, Yan L, Brito C, Wyart M, Gkeka P, Rivalta I, Palermo G, McCammon JA, Panecka-Hofman J, Wade RC, Di Pizio A, Niv MY, Nussinov R, Tsai CJ, Jang H, Padhorny D, Kozakov D, McLeish T.

Structure. 2019 Apr 2;27(4):566-578. doi: 10.1016/j.str.2019.01.003. Epub 2019 Feb 7. Review.


Structure-factor amplitude reconstruction from serial femtosecond crystallography of two-dimensional membrane-protein crystals.

Casadei CM, Nass K, Barty A, Hunter MS, Padeste C, Tsai CJ, Boutet S, Messerschmidt M, Sala L, Williams GJ, Ozerov D, Coleman M, Li XD, Frank M, Pedrini B.

IUCrJ. 2019 Jan 1;6(Pt 1):34-45. doi: 10.1107/S2052252518014641. eCollection 2019 Jan 1.


Precision medicine review: rare driver mutations and their biophysical classification.

Nussinov R, Jang H, Tsai CJ, Cheng F.

Biophys Rev. 2019 Feb;11(1):5-19. doi: 10.1007/s12551-018-0496-2. Epub 2019 Jan 4. Review.


Feasibility and Characterization Mortar Blended with High-Amount Basic Oxygen Furnace Slag.

Lin WT, Tsai CJ, Chen J, Liu W.

Materials (Basel). 2018 Dec 20;12(1). pii: E6. doi: 10.3390/ma12010006.


Genome Editing in Trees: From Multiple Repair Pathways to Long-Term Stability.

Bewg WP, Ci D, Tsai CJ.

Front Plant Sci. 2018 Nov 23;9:1732. doi: 10.3389/fpls.2018.01732. eCollection 2018. Review.


Detection of Particulate Matter of Size 2.5 μm with a Surface-Acoustic-Wave Sensor Combined with a Cyclone Separator.

Kuo FY, Lin YC, Ke LY, Tsai CJ, Yao DJ.

Micromachines (Basel). 2018 Aug 12;9(8). pii: E398. doi: 10.3390/mi9080398.


The Causal Role of Mitochondrial Dynamics in Regulating Insulin Resistance in Diabetes: Link through Mitochondrial Reactive Oxygen Species.

Lin HY, Weng SW, Chang YH, Su YJ, Chang CM, Tsai CJ, Shen FC, Chuang JH, Lin TK, Liou CW, Lin CY, Wang PW.

Oxid Med Cell Longev. 2018 Sep 30;2018:7514383. doi: 10.1155/2018/7514383. eCollection 2018.


Interface-Based Structural Prediction of Novel Host-Pathogen Interactions.

Guven-Maiorov E, Tsai CJ, Ma B, Nussinov R.

Methods Mol Biol. 2019;1851:317-335. doi: 10.1007/978-1-4939-8736-8_18.


Autoinhibition in Ras effectors Raf, PI3Kα, and RASSF5: a comprehensive review underscoring the challenges in pharmacological intervention.

Nussinov R, Zhang M, Tsai CJ, Liao TJ, Fushman D, Jang H.

Biophys Rev. 2018 Oct;10(5):1263-1282. doi: 10.1007/s12551-018-0461-0. Epub 2018 Sep 29. Review.


Crystal structure of rhodopsin in complex with a mini-Go sheds light on the principles of G protein selectivity.

Tsai CJ, Pamula F, Nehmé R, Mühle J, Weinert T, Flock T, Nogly P, Edwards PC, Carpenter B, Gruhl T, Ma P, Deupi X, Standfuss J, Tate CG, Schertler GFX.

Sci Adv. 2018 Sep 19;4(9):eaat7052. doi: 10.1126/sciadv.aat7052. eCollection 2018 Sep.

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