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Items: 1 to 50 of 121

1.

doepipeline: a systematic approach to optimizing multi-level and multi-step data processing workflows.

Svensson D, Sjögren R, Sundell D, Sjödin A, Trygg J.

BMC Bioinformatics. 2019 Oct 15;20(1):498. doi: 10.1186/s12859-019-3091-z.

2.

Ultrasound imaging of dorsal neck muscles with speckle tracking analyses - the relationship between muscle deformation and force.

Peterson G, Leary SO, Nilsson D, Moodie K, Tucker K, Trygg J, Peolsson A.

Sci Rep. 2019 Sep 23;9(1):13688. doi: 10.1038/s41598-019-49916-1.

3.

Structural investigation of cell wall polysaccharides extracted from wild Finnish mushroom Craterellus tubaeformis (Funnel Chanterelle).

Beltrame G, Trygg J, Rahkila J, Leino R, Yang B.

Food Chem. 2019 Dec 15;301:125255. doi: 10.1016/j.foodchem.2019.125255. Epub 2019 Jul 25.

PMID:
31377617
4.

Data mining and visualisation: general discussion.

Afonso C, Barrow MP, Davies AN, Delsuc MA, Ebbels T, Fernandez-Lima F, Gauchotte-Lindsay C, Giusti P, Goodacre R, Hertkorn N, Jansen JJ, Jones D, Kew W, Kuhn S, Le Guennec A, Lubben A, Parkinson J, Paša-Tolić L, Rogers S, Rudd TR, Schoenmakers PJ, Sidebottom P, Summerfield S, Tinnevelt GH, Trifirò G, Trygg J, van der Hooft JJJ.

Faraday Discuss. 2019 Aug 15;218(0):354-371. doi: 10.1039/C9FD90044F. No abstract available.

PMID:
31373341
5.

Joint and unique multiblock analysis of biological data - multiomics malaria study.

Surowiec I, Skotare T, Sjögren R, Gouveia-Figueira S, Orikiiriza J, Bergström S, Normark J, Trygg J.

Faraday Discuss. 2019 Aug 15;218(0):268-283. doi: 10.1039/c8fd00243f.

PMID:
31120463
6.

Metabolic profiling of zebrafish embryo development from blastula period to early larval stages.

Dhillon SS, Torell F, Donten M, Lundstedt-Enkel K, Bennett K, Rännar S, Trygg J, Lundstedt T.

PLoS One. 2019 May 14;14(5):e0213661. doi: 10.1371/journal.pone.0213661. eCollection 2019.

7.

A geographically matched control population efficiently limits the number of candidate disease-causing variants in an unbiased whole-genome analysis.

Rentoft M, Svensson D, Sjödin A, Olason PI, Sjöström O, Nylander C, Osterman P, Sjögren R, Netotea S, Wibom C, Cederquist K, Chabes A, Trygg J, Melin BS, Johansson E.

PLoS One. 2019 Mar 27;14(3):e0213350. doi: 10.1371/journal.pone.0213350. eCollection 2019.

8.

Joint and Unique Multiblock Analysis for Integration and Calibration Transfer of NIR Instruments.

Skotare T, Nilsson D, Xiong S, Geladi P, Trygg J.

Anal Chem. 2019 Mar 5;91(5):3516-3524. doi: 10.1021/acs.analchem.8b05188. Epub 2019 Feb 21.

PMID:
30758178
9.

Cytokine Profiles in Autoantibody Defined Subgroups of Systemic Lupus Erythematosus.

Torell F, Eketjäll S, Idborg H, Jakobsson PJ, Gunnarsson I, Svenungsson E, Trygg J.

J Proteome Res. 2019 Mar 1;18(3):1208-1217. doi: 10.1021/acs.jproteome.8b00811. Epub 2019 Feb 18.

PMID:
30742448
10.

OnPLS-Based Multi-Block Data Integration: A Multivariate Approach to Interrogating Biological Interactions in Asthma.

Reinke SN, Galindo-Prieto B, Skotare T, Broadhurst DI, Singhania A, Horowitz D, Djukanović R, Hinks TSC, Geladi P, Trygg J, Wheelock CE.

Anal Chem. 2018 Nov 20;90(22):13400-13408. doi: 10.1021/acs.analchem.8b03205. Epub 2018 Nov 2.

11.

Quantification of run order effect on chromatography - mass spectrometry profiling data.

Surowiec I, Johansson E, Stenlund H, Rantapää-Dahlqvist S, Bergström S, Normark J, Trygg J.

J Chromatogr A. 2018 Sep 21;1568:229-234. doi: 10.1016/j.chroma.2018.07.019. Epub 2018 Jul 5.

PMID:
30007791
12.

Neck-specific exercise improves impaired interactions between ventral neck muscles in chronic whiplash: A randomized controlled ultrasound study.

Peterson G, Nilsson D, Trygg J, Peolsson A.

Sci Rep. 2018 Jun 25;8(1):9649. doi: 10.1038/s41598-018-27685-7.

13.

Metabolic Profiling of Multiorgan Samples: Evaluation of MODY5/RCAD Mutant Mice.

Torell F, Bennett K, Cereghini S, Fabre M, Rännar S, Lundstedt-Enkel K, Moritz T, Haumaitre C, Trygg J, Lundstedt T.

J Proteome Res. 2018 Jul 6;17(7):2293-2306. doi: 10.1021/acs.jproteome.7b00821. Epub 2018 Jun 15.

PMID:
29873499
14.

Kynurenine pathway is altered in patients with SLE and associated with severe fatigue.

Åkesson K, Pettersson S, Ståhl S, Surowiec I, Hedenström M, Eketjäll S, Trygg J, Jakobsson PJ, Gunnarsson I, Svenungsson E, Idborg H.

Lupus Sci Med. 2018 May 23;5(1):e000254. doi: 10.1136/lupus-2017-000254. eCollection 2018. Erratum in: Lupus Sci Med. 2019 May 17;6(1):e000254corr1.

15.

A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of​ ​​Populus​​ ​trees.

Obudulu O, Mähler N, Skotare T, Bygdell J, Abreu IN, Ahnlund M, Latha Gandla M, Petterle A, Moritz T, Hvidsten TR, Jönsson LJ, Wingsle G, Trygg J, Tuominen H.

BMC Genomics. 2018 Jan 3;19(1):11. doi: 10.1186/s12864-017-4411-1.

16.

Investigation of dissolved cellulose in development of buccal discs for oromucosal drug delivery.

Yildir E, Sjöholm E, Preis M, Trivedi P, Trygg J, Fardim P, Sandler N.

Pharm Dev Technol. 2018 Jun;23(5):520-529. doi: 10.1080/10837450.2017.1397163. Epub 2017 Nov 9.

PMID:
29067849
17.

Alterations in the Mechanical Response of Deep Dorsal Neck Muscles in Individuals Experiencing Whiplash-Associated Disorders Compared to Healthy Controls: An Ultrasound Study.

Rahnama L, Peterson G, Kazemnejad A, Trygg J, Peolsson A.

Am J Phys Med Rehabil. 2018 Feb;97(2):75-82. doi: 10.1097/PHM.0000000000000845.

18.

Multivariate strategy for the sample selection and integration of multi-batch data in metabolomics.

Surowiec I, Johansson E, Torell F, Idborg H, Gunnarsson I, Svenungsson E, Jakobsson PJ, Trygg J.

Metabolomics. 2017;13(10):114. doi: 10.1007/s11306-017-1248-1. Epub 2017 Aug 24.

19.

The oxylipin and endocannabidome responses in acute phase Plasmodium falciparum malaria in children.

Surowiec I, Gouveia-Figueira S, Orikiiriza J, Lindquist E, Bonde M, Magambo J, Muhinda C, Bergström S, Normark J, Trygg J.

Malar J. 2017 Sep 8;16(1):358. doi: 10.1186/s12936-017-2001-y.

20.

Association between pathology and texture features of multi parametric MRI of the prostate.

Kuess P, Andrzejewski P, Nilsson D, Georg P, Knoth J, Susani M, Trygg J, Helbich TH, Polanec SH, Georg D, Nyholm T.

Phys Med Biol. 2017 Sep 21;62(19):7833-7854. doi: 10.1088/1361-6560/aa884d.

PMID:
28837046
21.

Haralick texture features from apparent diffusion coefficient (ADC) MRI images depend on imaging and pre-processing parameters.

Brynolfsson P, Nilsson D, Torheim T, Asklund T, Karlsson CT, Trygg J, Nyholm T, Garpebring A.

Sci Rep. 2017 Jun 22;7(1):4041. doi: 10.1038/s41598-017-04151-4.

22.

Protein expression in tension wood formation monitored at high tissue resolution in Populus.

Bygdell J, Srivastava V, Obudulu O, Srivastava MK, Nilsson R, Sundberg B, Trygg J, Mellerowicz EJ, Wingsle G.

J Exp Bot. 2017 Jun 15;68(13):3405-3417. doi: 10.1093/jxb/erx186.

23.

Generalized Subset Designs in Analytical Chemistry.

Surowiec I, Vikström L, Hector G, Johansson E, Vikström C, Trygg J.

Anal Chem. 2017 Jun 20;89(12):6491-6497. doi: 10.1021/acs.analchem.7b00506. Epub 2017 May 30.

PMID:
28497952
24.

The effects of thawing on the plasma metabolome: evaluating differences between thawed plasma and multi-organ samples.

Torell F, Bennett K, Rännar S, Lundstedt-Enkel K, Lundstedt T, Trygg J.

Metabolomics. 2017;13(6):66. doi: 10.1007/s11306-017-1196-9. Epub 2017 Apr 17.

25.

Lipid response patterns in acute phase paediatric Plasmodium falciparum malaria.

Orikiiriza J, Surowiec I, Lindquist E, Bonde M, Magambo J, Muhinda C, Bergström S, Trygg J, Normark J.

Metabolomics. 2017;13(4):41. doi: 10.1007/s11306-017-1174-2. Epub 2017 Feb 23.

26.

Dysregulations in circulating sphingolipids associate with disease activity indices in female patients with systemic lupus erythematosus: a cross-sectional study.

Checa A, Idborg H, Zandian A, Sar DG, Surowiec I, Trygg J, Svenungsson E, Jakobsson PJ, Nilsson P, Gunnarsson I, Wheelock CE.

Lupus. 2017 Sep;26(10):1023-1033. doi: 10.1177/0961203316686707. Epub 2017 Jan 29.

PMID:
28134039
27.

Metabolite and Lipid Profiling of Biobank Plasma Samples Collected Prior to Onset of Rheumatoid Arthritis.

Surowiec I, Ärlestig L, Rantapää-Dahlqvist S, Trygg J.

PLoS One. 2016 Oct 18;11(10):e0164196. doi: 10.1371/journal.pone.0164196. eCollection 2016.

28.

Advanced Cellulose Fibers for Efficient Immobilization of Enzymes.

Vega Erramuspe IB, Fazeli E, Näreoja T, Trygg J, Hänninen P, Heinze T, Fardim P.

Biomacromolecules. 2016 Oct 10;17(10):3188-3197. Epub 2016 Sep 15.

PMID:
27575620
29.
30.

Metabolic Profiling of Systemic Lupus Erythematosus and Comparison with Primary Sjögren's Syndrome and Systemic Sclerosis.

Bengtsson AA, Trygg J, Wuttge DM, Sturfelt G, Theander E, Donten M, Moritz T, Sennbro CJ, Torell F, Lood C, Surowiec I, Rännar S, Lundstedt T.

PLoS One. 2016 Jul 21;11(7):e0159384. doi: 10.1371/journal.pone.0159384. eCollection 2016.

31.

Chemometric Analysis of Bacterial Peptidoglycan Reveals Atypical Modifications That Empower the Cell Wall against Predatory Enzymes and Fly Innate Immunity.

Espaillat A, Forsmo O, El Biari K, Björk R, Lemaitre B, Trygg J, Cañada FJ, de Pedro MA, Cava F.

J Am Chem Soc. 2016 Jul 27;138(29):9193-204. doi: 10.1021/jacs.6b04430. Epub 2016 Jul 13.

32.

Multi-platform metabolomics assays for human lung lavage fluids in an air pollution exposure study.

Surowiec I, Karimpour M, Gouveia-Figueira S, Wu J, Unosson J, Bosson JA, Blomberg A, Pourazar J, Sandström T, Behndig AF, Trygg J, Nording ML.

Anal Bioanal Chem. 2016 Jul;408(17):4751-64. doi: 10.1007/s00216-016-9566-0. Epub 2016 Apr 25.

PMID:
27113461
33.

Heterozygous colon cancer-associated mutations of SAMHD1 have functional significance.

Rentoft M, Lindell K, Tran P, Chabes AL, Buckland RJ, Watt DL, Marjavaara L, Nilsson AK, Melin B, Trygg J, Johansson E, Chabes A.

Proc Natl Acad Sci U S A. 2016 Apr 26;113(17):4723-8. doi: 10.1073/pnas.1519128113. Epub 2016 Apr 11. Erratum in: Proc Natl Acad Sci U S A. 2019 Mar 5;116(10):4744.

34.

Weighted species richness outperforms species richness as predictor of biotic resistance.

Henriksson A, Yu J, Wardle DA, Trygg J, Englund G.

Ecology. 2016 Jan;97(1):262-71.

PMID:
27008794
35.

Strong invaders are strong defenders - implications for the resistance of invaded communities.

Henriksson A, Wardle DA, Trygg J, Diehl S, Englund G.

Ecol Lett. 2016 Apr;19(4):487-94. doi: 10.1111/ele.12586. Epub 2016 Mar 7.

PMID:
26947421
36.

Changes in Dorsal Neck Muscle Function in Individuals with Chronic Whiplash-Associated Disorders: A Real-Time Ultrasound Case-Control Study.

Peterson G, Nilsson D, Peterson S, Dedering Å, Trygg J, Wallman T, Peolsson A.

Ultrasound Med Biol. 2016 May;42(5):1090-102. doi: 10.1016/j.ultrasmedbio.2015.12.022. Epub 2016 Feb 23.

37.

Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development.

Obudulu O, Bygdell J, Sundberg B, Moritz T, Hvidsten TR, Trygg J, Wingsle G.

BMC Genomics. 2016 Feb 18;17:119. doi: 10.1186/s12864-016-2458-z.

38.

Postprandial metabolomics: A pilot mass spectrometry and NMR study of the human plasma metabolome in response to a challenge meal.

Karimpour M, Surowiec I, Wu J, Gouveia-Figueira S, Pinto R, Trygg J, Zivkovic AM, Nording ML.

Anal Chim Acta. 2016 Feb 18;908:121-31. doi: 10.1016/j.aca.2015.12.009. Epub 2015 Dec 17.

PMID:
26826694
39.

Metabolomics study of fatigue in patients with rheumatoid arthritis naïve to biological treatment.

Surowiec I, Gjesdal CG, Jonsson G, Norheim KB, Lundstedt T, Trygg J, Omdal R.

Rheumatol Int. 2016 May;36(5):703-11. doi: 10.1007/s00296-016-3426-2. Epub 2016 Jan 23.

PMID:
26803313
40.

A multivariate approach using attenuated total reflectance mid-infrared spectroscopy to measure the surface mannoproteins and β-glucans of yeast cell walls during wine fermentations.

Moore JP, Zhang SL, Nieuwoudt H, Divol B, Trygg J, Bauer FF.

J Agric Food Chem. 2015 Nov 18;63(45):10054-63. doi: 10.1021/acs.jafc.5b03154. Epub 2015 Nov 4.

PMID:
26488434
41.

Novel insights into the interplay between ventral neck muscles in individuals with whiplash-associated disorders.

Peterson G, Nilsson D, Trygg J, Falla D, Dedering Å, Wallman T, Peolsson A.

Sci Rep. 2015 Oct 16;5:15289. doi: 10.1038/srep15289.

42.

Mechanical properties of the trapezius during scapular elevation in people with chronic whiplash associated disorders--A case-control ultrasound speckle tracking analysis.

Landén Ludvigsson M, Peterson G, Jull G, Trygg J, Peolsson A.

Man Ther. 2016 Feb;21:177-82. doi: 10.1016/j.math.2015.07.009. Epub 2015 Aug 5.

PMID:
26277485
43.

Organic compounds in concrete from demolition works.

Van Praagh M, Modin H, Trygg J.

Waste Manag. 2015 Nov;45:186-93. doi: 10.1016/j.wasman.2015.06.037. Epub 2015 Jul 9.

PMID:
26164853
44.

Metabolic Signature Profiling as a Diagnostic and Prognostic Tool in Pediatric Plasmodium falciparum Malaria.

Surowiec I, Orikiiriza J, Karlsson E, Nelson M, Bonde M, Kyamanwa P, Karenzi B, Bergström S, Trygg J, Normark J.

Open Forum Infect Dis. 2015 May 4;2(2):ofv062. doi: 10.1093/ofid/ofv062. eCollection 2015 Apr.

45.

Multi-Organ Contribution to the Metabolic Plasma Profile Using Hierarchical Modelling.

Torell F, Bennett K, Cereghini S, Rännar S, Lundstedt-Enkel K, Moritz T, Haumaitre C, Trygg J, Lundstedt T.

PLoS One. 2015 Jun 18;10(6):e0129260. doi: 10.1371/journal.pone.0129260. eCollection 2015.

46.

Complete Genome Sequence of Francisella guangzhouensis Strain 08HL01032T, Isolated from Air-Conditioning Systems in China.

Svensson D, Öhrman C, Bäckman S, Karlsson E, Nilsson E, Byström M, Lärkeryd A, Myrtennäs K, Stenberg P, Qu PH, Trygg J, Scholz HC, Forsman M, Sjödin A.

Genome Announc. 2015 Mar 19;3(2). pii: e00024-15. doi: 10.1128/genomeA.00024-15.

47.

Roll compaction process modeling: transfer between equipment and impact of process parameters.

Souihi N, Reynolds G, Tajarobi P, Wikström H, Haeffler G, Josefson M, Trygg J.

Int J Pharm. 2015 Apr 30;484(1-2):192-206. doi: 10.1016/j.ijpharm.2015.02.042. Epub 2015 Feb 18.

PMID:
25701630
48.

Following the compositional changes of fresh grape skin cell walls during the fermentation process in the presence and absence of maceration enzymes.

Zietsman AJ, Moore JP, Fangel JU, Willats WG, Trygg J, Vivier MA.

J Agric Food Chem. 2015 Mar 18;63(10):2798-810. doi: 10.1021/jf505200m. Epub 2015 Mar 3.

PMID:
25693868
49.

Near-infrared chemical imaging (NIR-CI) on roll compacted ribbons and tablets--multivariate mapping of physical and chemical properties.

Souihi N, Nilsson D, Josefson M, Trygg J.

Int J Pharm. 2015 Apr 10;483(1-2):200-11. doi: 10.1016/j.ijpharm.2015.02.006. Epub 2015 Feb 3.

PMID:
25660068
50.

OPLS in batch monitoring - Opens up new opportunities.

Souihi N, Lindegren A, Eriksson L, Trygg J.

Anal Chim Acta. 2015 Feb 1;857:28-38. doi: 10.1016/j.aca.2014.12.003. Epub 2014 Dec 5.

PMID:
25604817

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