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Items: 35

1.

Chaperone-mediated reflux of secretory proteins to the cytosol during endoplasmic reticulum stress.

Igbaria A, Merksamer PI, Trusina A, Tilahun F, Johnson JR, Brandman O, Krogan NJ, Weissman JS, Papa FR.

Proc Natl Acad Sci U S A. 2019 Jun 4;116(23):11291-11298. doi: 10.1073/pnas.1904516116. Epub 2019 May 17.

PMID:
31101715
2.

The fitness cost and benefit of phase-separated protein deposits.

Sanchez de Groot N, Torrent Burgas M, Ravarani CN, Trusina A, Ventura S, Babu MM.

Mol Syst Biol. 2019 Apr 8;15(4):e8075. doi: 10.15252/msb.20178075.

3.

Theoretical tool bridging cell polarities with development of robust morphologies.

Nissen SB, Rønhild S, Trusina A, Sneppen K.

Elife. 2018 Nov 27;7. pii: e38407. doi: 10.7554/eLife.38407.

4.

Stochastic priming and spatial cues orchestrate heterogeneous clonal contribution to mouse pancreas organogenesis.

Larsen HL, Martín-Coll L, Nielsen AV, Wright CVE, Trusina A, Kim YH, Grapin-Botton A.

Nat Commun. 2017 Sep 19;8(1):605. doi: 10.1038/s41467-017-00258-4.

5.

Impact of Zygosity on Bimodal Phenotype Distributions.

Holst-Hansen T, Abad E, Muntasell A, López-Botet M, Jensen MH, Trusina A, Garcia-Ojalvo J.

Biophys J. 2017 Jul 11;113(1):148-156. doi: 10.1016/j.bpj.2017.05.010.

6.

Four simple rules that are sufficient to generate the mammalian blastocyst.

Nissen SB, Perera M, Gonzalez JM, Morgani SM, Jensen MH, Sneppen K, Brickman JM, Trusina A.

PLoS Biol. 2017 Jul 12;15(7):e2000737. doi: 10.1371/journal.pbio.2000737. eCollection 2017 Jul.

7.

Evolution of a G protein-coupled receptor response by mutations in regulatory network interactions.

Di Roberto RB, Chang B, Trusina A, Peisajovich SG.

Nat Commun. 2016 Aug 4;7:12344. doi: 10.1038/ncomms12344.

8.

Asymmetric Damage Segregation Constitutes an Emergent Population-Level Stress Response.

Vedel S, Nunns H, Košmrlj A, Semsey S, Trusina A.

Cell Syst. 2016 Aug;3(2):187-198. doi: 10.1016/j.cels.2016.06.008. Epub 2016 Jul 14.

9.

Nucleation and spreading of a heterochromatic domain in fission yeast.

Obersriebnig MJ, Pallesen EM, Sneppen K, Trusina A, Thon G.

Nat Commun. 2016 May 11;7:11518. doi: 10.1038/ncomms11518.

10.

Dynamics of the DNA repair proteins WRN and BLM in the nucleoplasm and nucleoli.

Bendtsen KM, Jensen MB, May A, Rasmussen LJ, Trusina A, Bohr VA, Jensen MH.

Eur Biophys J. 2014 Nov;43(10-11):509-16. doi: 10.1007/s00249-014-0981-x. Epub 2014 Aug 14.

11.

Stress induced telomere shortening: longer life with less mutations?

Trusina A.

BMC Syst Biol. 2014 Mar 1;8:27. doi: 10.1186/1752-0509-8-27.

12.

Two portable recombination enhancers direct donor choice in fission yeast heterochromatin.

Jakočiūnas T, Holm LR, Verhein-Hansen J, Trusina A, Thon G.

PLoS Genet. 2013 Oct;9(10):e1003762. doi: 10.1371/journal.pgen.1003762. Epub 2013 Oct 24.

13.

Noisy transcription factor NF-κB oscillations stabilize and sensitize cytokine signaling in space.

Gangstad SW, Feldager CW, Juul J, Trusina A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Feb;87(2):022702. Epub 2013 Feb 5.

PMID:
23496543
14.

Circuit architecture explains functional similarity of bacterial heat shock responses.

Inoue M, Mitarai N, Trusina A.

Phys Biol. 2012 Dec;9(6):066003. doi: 10.1088/1478-3975/9/6/066003. Epub 2012 Oct 31.

PMID:
23114274
15.

IRE1α induces thioredoxin-interacting protein to activate the NLRP3 inflammasome and promote programmed cell death under irremediable ER stress.

Lerner AG, Upton JP, Praveen PV, Ghosh R, Nakagawa Y, Igbaria A, Shen S, Nguyen V, Backes BJ, Heiman M, Heintz N, Greengard P, Hui S, Tang Q, Trusina A, Oakes SA, Papa FR.

Cell Metab. 2012 Aug 8;16(2):250-64. doi: 10.1016/j.cmet.2012.07.007.

16.

Fragile DNA repair mechanism reduces ageing in multicellular model.

Bendtsen KM, Juul J, Trusina A.

PLoS One. 2012;7(5):e36018. doi: 10.1371/journal.pone.0036018. Epub 2012 May 2.

17.

Conditional cooperativity in toxin-antitoxin regulation prevents random toxin activation and promotes fast translational recovery.

Cataudella I, Trusina A, Sneppen K, Gerdes K, Mitarai N.

Nucleic Acids Res. 2012 Aug;40(14):6424-34. doi: 10.1093/nar/gks297. Epub 2012 Apr 11.

18.

Analyzing inflammatory response as excitable media.

Yde P, Jensen MH, Trusina A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Nov;84(5 Pt 1):051913. Epub 2011 Nov 18.

PMID:
22181450
19.

Ecosystems with mutually exclusive interactions self-organize to a state of high diversity.

Mathiesen J, Mitarai N, Sneppen K, Trusina A.

Phys Rev Lett. 2011 Oct 28;107(18):188101. Epub 2011 Oct 25.

PMID:
22107676
20.

Targeted bacterial immunity buffers phage diversity.

Haerter JO, Trusina A, Sneppen K.

J Virol. 2011 Oct;85(20):10554-60. doi: 10.1128/JVI.05222-11. Epub 2011 Aug 3.

21.

Modeling the NF-κB mediated inflammatory response predicts cytokine waves in tissue.

Yde P, Mengel B, Jensen MH, Krishna S, Trusina A.

BMC Syst Biol. 2011 Jul 19;5:115. doi: 10.1186/1752-0509-5-115.

22.

The unfolded protein response and translation attenuation: a modelling approach.

Trusina A, Tang C.

Diabetes Obes Metab. 2010 Oct;12 Suppl 2:27-31. doi: 10.1111/j.1463-1326.2010.01274.x. Review.

PMID:
21029297
23.

A minimal model for multiple epidemics and immunity spreading.

Sneppen K, Trusina A, Jensen MH, Bornholdt S.

PLoS One. 2010 Oct 18;5(10):e13326. doi: 10.1371/journal.pone.0013326.

24.

Modeling oscillatory control in NF-κB, p53 and Wnt signaling.

Mengel B, Hunziker A, Pedersen L, Trusina A, Jensen MH, Krishna S.

Curr Opin Genet Dev. 2010 Dec;20(6):656-64. doi: 10.1016/j.gde.2010.08.008. Epub 2010 Oct 9. Review.

PMID:
20934871
25.

Defining network topologies that can achieve biochemical adaptation.

Ma W, Trusina A, El-Samad H, Lim WA, Tang C.

Cell. 2009 Aug 21;138(4):760-73. doi: 10.1016/j.cell.2009.06.013.

26.

Rationalizing translation attenuation in the network architecture of the unfolded protein response.

Trusina A, Papa FR, Tang C.

Proc Natl Acad Sci U S A. 2008 Dec 23;105(51):20280-5. doi: 10.1073/pnas.0803476105. Epub 2008 Dec 15.

27.

Real-time redox measurements during endoplasmic reticulum stress reveal interlinked protein folding functions.

Merksamer PI, Trusina A, Papa FR.

Cell. 2008 Nov 28;135(5):933-47. doi: 10.1016/j.cell.2008.10.011. Epub 2008 Nov 20.

28.

Aging mechanism as the "down side" of adaptation: a network approach.

Borup MT, Trusina A, Andersson AM.

J Theor Biol. 2008 Jan 7;250(1):66-74. Epub 2007 Sep 19.

PMID:
17961600
29.

Degree landscapes in scale-free networks.

Axelsen JB, Bernhardsson S, Rosvall M, Sneppen K, Trusina A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Sep;74(3 Pt 2):036119. Epub 2006 Sep 26.

PMID:
17025720
30.

Functional alignment of regulatory networks: a study of temperate phages.

Trusina A, Sneppen K, Dodd IB, Shearwin KE, Egan JB.

PLoS Comput Biol. 2005 Dec;1(7):e74. Epub 2005 Dec 23.

31.

Communication boundaries in networks.

Trusina A, Rosvall M, Sneppen K.

Phys Rev Lett. 2005 Jun 17;94(23):238701. Epub 2005 Jun 16.

PMID:
16090509
32.

Networks and cities: an information perspective.

Rosvall M, Trusina A, Minnhagen P, Sneppen K.

Phys Rev Lett. 2005 Jan 21;94(2):028701. Epub 2005 Jan 19.

PMID:
15698238
33.

Hierarchy measures in complex networks.

Trusina A, Maslov S, Minnhagen P, Sneppen K.

Phys Rev Lett. 2004 Apr 30;92(17):178702. Epub 2004 Apr 29.

PMID:
15169201
34.

Prisoners' dilemma in real-world acquaintance networks: spikes and quasiequilibria induced by the interplay between structure and dynamics.

Holme P, Trusina A, Kim BJ, Minnhagen P.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Sep;68(3 Pt 1):030901. Epub 2003 Sep 22.

PMID:
14524743
35.

Dynamic instabilities induced by asymmetric influence: prisoners' dilemma game in small-world networks.

Kim BJ, Trusina A, Holme P, Minnhagen P, Chung JS, Choi MY.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Aug;66(2 Pt 1):021907. Epub 2002 Aug 26.

PMID:
12241214

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