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Items: 40

1.

Water footprint of winter wheat under climate change: Trends and uncertainties associated to the ensemble of crop models.

Garofalo P, Ventrella D, Kersebaum KC, Gobin A, Trnka M, Giglio L, Dubrovský M, Castellini M.

Sci Total Environ. 2019 Mar 25;658:1186-1208. doi: 10.1016/j.scitotenv.2018.12.279. Epub 2018 Dec 20.

PMID:
30677982
2.

Histone H3 binding to the PHD1 domain of histone demethylase KDM5A enables active site remodeling.

Longbotham JE, Chio CM, Dharmarajan V, Trnka MJ, Torres IO, Goswami D, Ruiz K, Burlingame AL, Griffin PR, Fujimori DG.

Nat Commun. 2019 Jan 9;10(1):94. doi: 10.1038/s41467-018-07829-z.

PMID:
30626866
3.

Decline in climate resilience of European wheat.

Kahiluoto H, Kaseva J, Balek J, Olesen JE, Ruiz-Ramos M, Gobin A, Kersebaum KC, Takáč J, Ruget F, Ferrise R, Bezak P, Capellades G, Dibari C, Mäkinen H, Nendel C, Ventrella D, Rodríguez A, Bindi M, Trnka M.

Proc Natl Acad Sci U S A. 2019 Jan 2;116(1):123-128. doi: 10.1073/pnas.1804387115. Epub 2018 Dec 24.

4.

Extracellular matrix affects different aspects of cell behaviour potentially involved in response to aminolevulinic acid-based photoinactivation.

Čunderlíková B, Filová B, Kajo K, Vallová M, Balázsiová Z, Trnka M, Mateašík A.

J Photochem Photobiol B. 2018 Dec;189:283-291. doi: 10.1016/j.jphotobiol.2018.08.017. Epub 2018 Aug 17.

PMID:
30439643
5.

A Viral Protein Restricts Drosophila RNAi Immunity by Regulating Argonaute Activity and Stability.

Nayak A, Kim DY, Trnka MJ, Kerr CH, Lidsky PV, Stanley DJ, Rivera BM, Li KH, Burlingame AL, Jan E, Frydman J, Gross JD, Andino R.

Cell Host Microbe. 2018 Oct 10;24(4):542-557.e9. doi: 10.1016/j.chom.2018.09.006.

PMID:
30308158
6.

Phenological sensitivity to climate change is higher in resident than in migrant bird populations among European cavity breeders.

Samplonius JM, Bartošová L, Burgess MD, Bushuev AV, Eeva T, Ivankina EV, Kerimov AB, Krams I, Laaksonen T, Mägi M, Mänd R, Potti J, Török J, Trnka M, Visser ME, Zang H, Both C.

Glob Chang Biol. 2018 Aug;24(8):3780-3790. doi: 10.1111/gcb.14160. Epub 2018 Apr 25.

PMID:
29691942
7.

The nucleosomal acidic patch relieves auto-inhibition by the ISWI remodeler SNF2h.

Gamarra N, Johnson SL, Trnka MJ, Burlingame AL, Narlikar GJ.

Elife. 2018 Apr 17;7. pii: e35322. doi: 10.7554/eLife.35322.

8.

Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.

Larson AG, Elnatan D, Keenen MM, Trnka MJ, Johnston JB, Burlingame AL, Agard DA, Redding S, Narlikar GJ.

Nature. 2017 Jul 13;547(7662):236-240. doi: 10.1038/nature22822. Epub 2017 Jun 21.

9.

Regulation of Rvb1/Rvb2 by a Domain within the INO80 Chromatin Remodeling Complex Implicates the Yeast Rvbs as Protein Assembly Chaperones.

Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ.

Cell Rep. 2017 Jun 6;19(10):2033-2044. doi: 10.1016/j.celrep.2017.05.029.

10.

Climate change is predicted to alter the current pest status of Globodera pallida and G. rostochiensis in the United Kingdom.

Jones LM, Koehler AK, Trnka M, Balek J, Challinor AJ, Atkinson HJ, Urwin PE.

Glob Chang Biol. 2017 Nov;23(11):4497-4507. doi: 10.1111/gcb.13676. Epub 2017 Mar 30.

11.

Cell-type dependent response to photodynamic treatment in 3D collagen cell cultures.

Mateašík A, Trnka M, Kajo K, Vallová M, Čunderlíková B.

J Photochem Photobiol B. 2017 Jan;166:94-103. doi: 10.1016/j.jphotobiol.2016.08.050. Epub 2016 Nov 11.

PMID:
27888741
12.

Structure of a Complete Mediator-RNA Polymerase II Pre-Initiation Complex.

Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD.

Cell. 2016 Sep 8;166(6):1411-1422.e16. doi: 10.1016/j.cell.2016.08.050.

13.

Cristobalite and Hematite Particles in Human Brain.

Kopani M, Kopaniova A, Trnka M, Caplovicova M, Rychly B, Jakubovsky J.

Biol Trace Elem Res. 2016 Nov;174(1):52-57. Epub 2016 Apr 16.

PMID:
27085547
14.

Chaperonin TRiC/CCT Modulates the Folding and Activity of Leukemogenic Fusion Oncoprotein AML1-ETO.

Roh SH, Kasembeli M, Galaz-Montoya JG, Trnka M, Lau WC, Burlingame A, Chiu W, Tweardy DJ.

J Biol Chem. 2016 Feb 26;291(9):4732-41. doi: 10.1074/jbc.M115.684878. Epub 2015 Dec 24.

15.

Adaptation options for wheat in Europe will be limited by increased adverse weather events under climate change.

Trnka M, Hlavinka P, Semenov MA.

J R Soc Interface. 2015 Nov 6;12(112). pii: 20150721. doi: 10.1098/rsif.2015.0721.

16.

Molecular architecture of the yeast Mediator complex.

Robinson PJ, Trnka MJ, Pellarin R, Greenberg CH, Bushnell DA, Davis R, Burlingame AL, Sali A, Kornberg RD.

Elife. 2015 Sep 24;4. pii: e08719. doi: 10.7554/eLife.08719.

17.

Pollution control enhanced spruce growth in the "Black Triangle" near the Czech-Polish border.

Kolář T, Čermák P, Oulehle F, Trnka M, Štěpánek P, Cudlín P, Hruška J, Büntgen U, Rybníček M.

Sci Total Environ. 2015 Dec 15;538:703-11. doi: 10.1016/j.scitotenv.2015.08.105. Epub 2015 Aug 29.

PMID:
26327638
18.

Improved Peak Detection and Deconvolution of Native Electrospray Mass Spectra from Large Protein Complexes.

Lu J, Trnka MJ, Roh SH, Robinson PJ, Shiau C, Fujimori DG, Chiu W, Burlingame AL, Guan S.

J Am Soc Mass Spectrom. 2015 Dec;26(12):2141-51. doi: 10.1007/s13361-015-1235-6. Epub 2015 Sep 1.

19.

Deconvolution method for specific and nonspecific binding of ligand to multiprotein complex by native mass spectrometry.

Guan S, Trnka MJ, Bushnell DA, Robinson PJ, Gestwicki JE, Burlingame AL.

Anal Chem. 2015 Aug 18;87(16):8541-6. doi: 10.1021/acs.analchem.5b02258. Epub 2015 Jul 29.

20.

Human liver cytochrome P450 3A4 ubiquitination: molecular recognition by UBC7-gp78 autocrine motility factor receptor and UbcH5a-CHIP-Hsc70-Hsp40 E2-E3 ubiquitin ligase complexes.

Wang Y, Kim SM, Trnka MJ, Liu Y, Burlingame AL, Correia MA.

J Biol Chem. 2015 Feb 6;290(6):3308-32. doi: 10.1074/jbc.M114.611525. Epub 2014 Dec 1.

21.

Matching cross-linked peptide spectra: only as good as the worse identification.

Trnka MJ, Baker PR, Robinson PJ, Burlingame AL, Chalkley RJ.

Mol Cell Proteomics. 2014 Feb;13(2):420-34. doi: 10.1074/mcp.M113.034009. Epub 2013 Dec 12.

22.

Modelling shifts in agroclimate and crop cultivar response under climate change.

Rötter RP, Höhn J, Trnka M, Fronzek S, Carter TR, Kahiluoto H.

Ecol Evol. 2013 Oct;3(12):4197-214. doi: 10.1002/ece3.782. Epub 2013 Sep 30. Erratum in: Ecol Evol. 2013 Nov;3(13):4620.

23.

Determination of areas with the most significant shift in persistence of pests in Europe under climate change.

Svobodová E, Trnka M, Dubrovský M, Semerádová D, Eitzinger J, Stěpánek P, Zalud Z.

Pest Manag Sci. 2014 May;70(5):708-15. doi: 10.1002/ps.3622. Epub 2013 Sep 12.

PMID:
23901033
24.

Phenological differences among selected residents and long-distance migrant bird species in central Europe.

Bartošová L, Trnka M, Bauer Z, Možný M, Stěpánek P, Zalud Z.

Int J Biometeorol. 2014 Jul;58(5):809-17. doi: 10.1007/s00484-013-0661-z. Epub 2013 May 3.

PMID:
23640249
25.

Reconstitution of nucleosome demethylation and catalytic properties of a Jumonji histone demethylase.

Shiau C, Trnka MJ, Bozicevic A, Ortiz Torres I, Al-Sady B, Burlingame AL, Narlikar GJ, Fujimori DG.

Chem Biol. 2013 Apr 18;20(4):494-9. doi: 10.1016/j.chembiol.2013.03.008.

26.

Structure of the mediator head module bound to the carboxy-terminal domain of RNA polymerase II.

Robinson PJ, Bushnell DA, Trnka MJ, Burlingame AL, Kornberg RD.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17931-5. doi: 10.1073/pnas.1215241109. Epub 2012 Oct 15.

27.

Changes in time of sowing, flowering and maturity of cereals in Europe under climate change.

Olesen JE, Børgesen CD, Elsgaard L, Palosuo T, Rötter RP, Skjelvåg AO, Peltonen-Sainio P, Börjesson T, Trnka M, Ewert F, Siebert S, Brisson N, Eitzinger J, van Asselt ED, Oberforster M, van der Fels-Klerx HJ.

Food Addit Contam Part A Chem Anal Control Expo Risk Assess. 2012;29(10):1527-42. doi: 10.1080/19440049.2012.712060. Epub 2012 Aug 30.

PMID:
22934894
28.

The role of conformational flexibility on protein supercharging in native electrospray ionization.

Sterling HJ, Cassou CA, Trnka MJ, Burlingame AL, Krantz BA, Williams ER.

Phys Chem Chem Phys. 2011 Nov 7;13(41):18288-96. doi: 10.1039/c1cp20277d. Epub 2011 Mar 14.

30.

Changing climate and the phenological response of great tit and collared flycatcher populations in floodplain forest ecosystems in Central Europe.

Bauer Z, Trnka M, Bauerová J, Mozný M, Stepánek P, Bartosová L, Zalud Z.

Int J Biometeorol. 2010 Jan;54(1):99-111.

PMID:
20099374
31.

Covalent heme attachment to the protein in human heme oxygenase-1 with selenocysteine replacing the His25 proximal iron ligand.

Jiang Y, Trnka MJ, Medzihradszky KF, Ouellet H, Wang Y, Ortiz de Montellano PR.

J Inorg Biochem. 2009 Mar;103(3):316-25. doi: 10.1016/j.jinorgbio.2008.11.002. Epub 2008 Nov 19.

32.

Impacts of climate change and variability on European agriculture: results of inventory analysis in COST 734 countries.

Orlandini S, Nejedlik P, Eitzinger J, Alexandrov V, Toulios L, Calanca P, Trnka M, Olesen JE.

Ann N Y Acad Sci. 2008 Dec;1146:338-53. doi: 10.1196/annals.1446.013.

PMID:
19076423
33.

Ligand-induced conformational heterogeneity of cytochrome P450 CYP119 identified by 2D NMR spectroscopy with the unnatural amino acid (13)C-p-methoxyphenylalanine.

Lampe JN, Floor SN, Gross JD, Nishida CR, Jiang Y, Trnka MJ, Ortiz de Montellano PR.

J Am Chem Soc. 2008 Dec 3;130(48):16168-9. doi: 10.1021/ja8071463.

34.

Effect of Estimated Daily Global Solar Radiation Data on the Results of Crop Growth Models.

Trnka M, Eitzinger J, Kapler P, Dubrovský M, Semerádová D, Žalud Z, Formayer H.

Sensors (Basel). 2007 Oct 16;7(10):2330-2362. doi: 10.3390/s7102330.

35.

The association of alcohol-induced blackouts and grayouts to blood alcohol concentrations.

Perry PJ, Argo TR, Barnett MJ, Liesveld JL, Liskow B, Hernan JM, Trnka MG, Brabson MA.

J Forensic Sci. 2006 Jul;51(4):896-9.

PMID:
16882236
36.

Photoaffinity labeling of P450Cam by an imidazole-tethered benzophenone probe.

Trnka MJ, Doneanu CE, Trager WF.

Arch Biochem Biophys. 2006 Jan 1;445(1):95-107. Epub 2005 Nov 14.

PMID:
16321358
37.

Configurations of a flow injection system for perfusion studies of adherent cells.

Baxter PJ, Hallgren L, Pollema CH, Trnka M, Ruzicka J.

Anal Chem. 1995 Apr 15;67(8):1486-90.

PMID:
7741218
38.

Characterization of the cytochrome c oxidase in isolated and purified plasma membranes from the cyanobacterium Anacystis nidulans.

Peschek GA, Wastyn M, Trnka M, Molitor V, Fry IV, Packer L.

Biochemistry. 1989 Apr 4;28(7):3057-63.

PMID:
2545245
39.

Immunological and spectral characterization of partly purified cytochrome oxidase from the cyanobacterium Synechocystis 6714.

Wastyn M, Achatz A, Trnka M, Peschek GA.

Biochem Biophys Res Commun. 1987 Nov 30;149(1):102-11.

PMID:
2825695
40.

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