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Items: 1 to 50 of 111

1.

Modular design: Implementing proven engineering principles in biotechnology.

Garcia S, Trinh CT.

Biotechnol Adv. 2019 Jun 7. pii: S0734-9750(19)30092-8. doi: 10.1016/j.biotechadv.2019.06.002. [Epub ahead of print] Review.

PMID:
31181317
2.

Use of scanning and image recognition technology to semi-automate larval development assessment in toxicity tests with a tropical copepod.

Binet MT, Gissi F, Stone S, Trinh C, McKnight KS.

Ecotoxicol Environ Saf. 2019 Sep 30;180:1-11. doi: 10.1016/j.ecoenv.2019.03.049. Epub 2019 May 2.

PMID:
31055079
3.

Recurrence of retroperitoneal mature cystic teratoma in an adult: A case report.

Hoang VT, Trinh CT, Le TB, Le TK.

Radiol Case Rep. 2019 Mar 27;14(6):692-696. doi: 10.1016/j.radcr.2019.03.008. eCollection 2019 Jun.

4.

Exceptional solvent tolerance in Yarrowia lipolytica is enhanced by sterols.

Walker C, Ryu S, Trinh CT.

Metab Eng. 2019 Jul;54:83-95. doi: 10.1016/j.ymben.2019.03.003. Epub 2019 Mar 15.

PMID:
30885767
5.

Directed Assembly of Homopentameric Cholera Toxin B-Subunit Proteins into Higher-Order Structures Using Coiled-Coil Appendages.

Ross JF, Wildsmith GC, Johnson M, Hurdiss DL, Hollingsworth K, Thompson RF, Mosayebi M, Trinh CH, Paci E, Pearson AR, Webb ME, Turnbull WB.

J Am Chem Soc. 2019 Apr 3;141(13):5211-5219. doi: 10.1021/jacs.8b11480. Epub 2019 Mar 21.

6.

First Search for Short-Baseline Neutrino Oscillations at HFIR with PROSPECT.

Ashenfelter J, Balantekin AB, Baldenegro C, Band HR, Bass CD, Bergeron DE, Berish D, Bignell LJ, Bowden NS, Bricco J, Brodsky JP, Bryan CD, Bykadorova Telles A, Cherwinka JJ, Classen T, Commeford K, Conant AJ, Cox AA, Davee D, Dean D, Deichert G, Diwan MV, Dolinski MJ, Erickson A, Febbraro M, Foust BT, Gaison JK, Galindo-Uribarri A, Gilbert CE, Gilje KE, Glenn A, Goddard BW, Hackett BT, Han K, Hans S, Hansell AB, Heeger KM, Heffron B, Insler J, Jaffe DE, Ji X, Jones DC, Koehler K, Kyzylova O, Lane CE, Langford TJ, LaRosa J, Littlejohn BR, Lopez F, Lu X, Martinez Caicedo DA, Matta JT, McKeown RD, Mendenhall MP, Miller HJ, Minock JM, Mueller PE, Mumm HP, Napolitano J, Neilson R, Nikkel JA, Norcini D, Nour S, Pushin DA, Qian X, Romero-Romero E, Rosero R, Sarenac D, Seilhan BS, Sharma R, Surukuchi PT, Trinh C, Tyra MA, Varner RL, Viren B, Wagner JM, Wang W, White B, White C, Wilhelmi J, Wise T, Yao H, Yeh M, Yen YR, Zhang A, Zhang C, Zhang X, Zhao M; PROSPECT Collaboration <a href="#n1">1</a>.

Phys Rev Lett. 2018 Dec 21;121(25):251802. doi: 10.1103/PhysRevLett.121.251802.

PMID:
30608854
7.

Draft Genome Assemblies of Five Robust Yarrowia lipolytica Strains Exhibiting High Lipid Production, Pentose Sugar Utilization, and Sugar Alcohol Secretion from Undetoxified Lignocellulosic Biomass Hydrolysates.

Walker C, Ryu S, Na H, Zane M, LaButti K, Lipzen A, Haridas S, Barry K, Grigoriev IV, Quarterman J, Slininger P, Dien B, Trinh CT.

Microbiol Resour Announc. 2018 Sep 27;7(12). pii: e01040-18. doi: 10.1128/MRA.01040-18. eCollection 2018 Sep.

8.

The Structure of the Human Respiratory Syncytial Virus M2-1 Protein Bound to the Interaction Domain of the Phosphoprotein P Defines the Orientation of the Complex.

Selvaraj M, Yegambaram K, Todd EJAA, Richard CA, Dods RL, Pangratiou GM, Trinh CH, Moul SL, Murphy JC, Mankouri J, Éléouët JF, Barr JN, Edwards TA.

MBio. 2018 Nov 13;9(6). pii: e01554-18. doi: 10.1128/mBio.01554-18.

9.

Identification of the site of oxidase substrate binding in Scytalidium thermophilum catalase.

Yuzugullu Karakus Y, Goc G, Balci S, Yorke BA, Trinh CH, McPherson MJ, Pearson AR.

Acta Crystallogr D Struct Biol. 2018 Oct 1;74(Pt 10):979-985. doi: 10.1107/S2059798318010628. Epub 2018 Oct 2.

10.

Enhanced anthocyanin accumulation confers increased growth performance in plants under low nitrate and high salt stress conditions owing to active modulation of nitrate metabolism.

Truong HA, Lee WJ, Jeong CY, Trịnh CS, Lee S, Kang CS, Cheong YK, Hong SW, Lee H.

J Plant Physiol. 2018 Dec;231:41-48. doi: 10.1016/j.jplph.2018.08.015. Epub 2018 Sep 1.

PMID:
30216785
11.

Multiobjective strain design: A framework for modular cell engineering.

Garcia S, Trinh CT.

Metab Eng. 2019 Jan;51:110-120. doi: 10.1016/j.ymben.2018.09.003. Epub 2018 Sep 7.

PMID:
30201314
12.

Harnessing a P450 fatty acid decarboxylase from Macrococcus caseolyticus for microbial biosynthesis of odd chain terminal alkenes.

Lee JW, Niraula NP, Trinh CT.

Metab Eng Commun. 2018 Jul 24;7:e00076. doi: 10.1016/j.mec.2018.e00076. eCollection 2018 Dec.

13.

Oxygen Activation Switch in the Copper Amine Oxidase of Escherichia coli.

Gaule TG, Smith MA, Tych KM, Pirrat P, Trinh CH, Pearson AR, Knowles PF, McPherson MJ.

Biochemistry. 2018 Sep 11;57(36):5301-5314. doi: 10.1021/acs.biochem.8b00633. Epub 2018 Aug 24.

14.

In Silico Processing of the Complete CRISPR-Cas Spacer Space for Identification of PAM Sequences.

Mendoza BJ, Trinh CT.

Biotechnol J. 2018 Sep;13(9):e1700595. doi: 10.1002/biot.201700595. Epub 2018 Aug 23.

PMID:
30076736
15.

Dual role of SND1 facilitates efficient communication between abiotic stress signalling and normal growth in Arabidopsis.

Jeong CY, Lee WJ, Truong HA, Trịnh CS, Jin JY, Kim S, Hwang KY, Kang CS, Moon JK, Hong SW, Lee H.

Sci Rep. 2018 Jul 4;8(1):10114. doi: 10.1038/s41598-018-28413-x.

16.

Paenibacillus pabuli strain P7S promotes plant growth and induces anthocyanin accumulation in Arabidopsis thaliana.

Trinh CS, Jeong CY, Lee WJ, Truong HA, Chung N, Han J, Hong SW, Lee H.

Plant Physiol Biochem. 2018 Aug;129:264-272. doi: 10.1016/j.plaphy.2018.06.001. Epub 2018 Jun 1.

PMID:
29906776
17.

Fluorescent impurity emitter in toluene and its photon emission properties.

Trinh CT, Lee J, Lee KG.

Sci Rep. 2018 May 29;8(1):8273. doi: 10.1038/s41598-018-26686-w.

18.

Evaluation of the plant growth-promoting activity of Pseudomonas nitroreducens in Arabidopsis thaliana and Lactuca sativa.

Trinh CS, Lee H, Lee WJ, Lee SJ, Chung N, Han J, Kim J, Hong SW, Lee H.

Plant Cell Rep. 2018 Jun;37(6):873-885. doi: 10.1007/s00299-018-2275-8. Epub 2018 Mar 14.

PMID:
29541882
19.

Comprehensive characterization of toxicity of fermentative metabolites on microbial growth.

Wilbanks B, Trinh CT.

Biotechnol Biofuels. 2017 Nov 30;10:262. doi: 10.1186/s13068-017-0952-4. eCollection 2017.

20.

A Single Mutation is Sufficient to Modify the Metal Selectivity and Specificity of a Eukaryotic Manganese Superoxide Dismutase to Encompass Iron.

Hunter T, Bonetta R, Sacco A, Vella M, Sultana PM, Trinh CH, Fadia HBR, Borowski T, Garcia-Fandiño R, Stockner T, Hunter GJ.

Chemistry. 2018 Apr 6;24(20):5303-5308. doi: 10.1002/chem.201704655. Epub 2017 Dec 12.

21.

Understanding Functional Roles of Native Pentose-Specific Transporters for Activating Dormant Pentose Metabolism in Yarrowia lipolytica.

Ryu S, Trinh CT.

Appl Environ Microbiol. 2018 Jan 17;84(3). pii: e02146-17. doi: 10.1128/AEM.02146-17. Print 2018 Feb 1.

22.

Generation of specific inhibitors of SUMO-1- and SUMO-2/3-mediated protein-protein interactions using Affimer (Adhiron) technology.

Hughes DJ, Tiede C, Penswick N, Tang AA, Trinh CH, Mandal U, Zajac KZ, Gaule T, Howell G, Edwards TA, Duan J, Feyfant E, McPherson MJ, Tomlinson DC, Whitehouse A.

Sci Signal. 2017 Nov 14;10(505). pii: eaaj2005. doi: 10.1126/scisignal.aaj2005.

23.

A Prototype for Modular Cell Engineering.

Wilbanks B, Layton DS, Garcia S, Trinh CT.

ACS Synth Biol. 2018 Jan 19;7(1):187-199. doi: 10.1021/acssynbio.7b00269. Epub 2017 Nov 22.

PMID:
29017319
24.
25.

Overflow metabolism and growth cessation in Clostridium thermocellum DSM1313 during high cellulose loading fermentations.

Thompson RA, Trinh CT.

Biotechnol Bioeng. 2017 Nov;114(11):2592-2604. doi: 10.1002/bit.26374. Epub 2017 Aug 15.

PMID:
28671264
26.

Extending enzyme molecular recognition with an expanded amino acid alphabet.

Windle CL, Simmons KJ, Ault JR, Trinh CH, Nelson A, Pearson AR, Berry A.

Proc Natl Acad Sci U S A. 2017 Mar 7;114(10):2610-2615. doi: 10.1073/pnas.1616816114. Epub 2017 Feb 14.

27.

Exploring complex cellular phenotypes and model-guided strain design with a novel genome-scale metabolic model of Clostridium thermocellum DSM 1313 implementing an adjustable cellulosome.

Thompson RA, Dahal S, Garcia S, Nookaew I, Trinh CT.

Biotechnol Biofuels. 2016 Sep 6;9(1):194. doi: 10.1186/s13068-016-0607-x. eCollection 2016.

28.

Microbial synthesis of a branched-chain ester platform from organic waste carboxylates.

Layton DS, Trinh CT.

Metab Eng Commun. 2016 Aug 6;3:245-251. doi: 10.1016/j.meteno.2016.08.001. eCollection 2016 Dec.

29.

Hypertrophic cardiomyopathy mutations in the calponin-homology domain of ACTN2 affect actin binding and cardiomyocyte Z-disc incorporation.

Haywood NJ, Wolny M, Rogers B, Trinh CH, Shuping Y, Edwards TA, Peckham M.

Biochem J. 2016 Aug 15;473(16):2485-93. doi: 10.1042/BCJ20160421. Epub 2016 Jun 10.

30.

Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance.

Stevenson SR, Kamisugi Y, Trinh CH, Schmutz J, Jenkins JW, Grimwood J, Muchero W, Tuskan GA, Rensing SA, Lang D, Reski R, Melkonian M, Rothfels CJ, Li FW, Larsson A, Wong GK, Edwards TA, Cuming AC.

Plant Cell. 2016 Jun;28(6):1310-27. doi: 10.1105/tpc.16.00091. Epub 2016 May 18.

31.

Erratum for Ryu et al., Activating and Elucidating Metabolism of Complex Sugars in Yarrowia lipolytica.

Ryu S, Hipp J, Trinh CT.

Appl Environ Microbiol. 2016 Apr 4;82(8):2572. doi: 10.1128/AEM.00457-16. Print 2016 Apr. No abstract available.

32.

Engineering an Escherichia coli platform to synthesize designer biodiesels.

Wierzbicki M, Niraula N, Yarrabothula A, Layton DS, Trinh CT.

J Biotechnol. 2016 Apr 20;224:27-34. doi: 10.1016/j.jbiotec.2016.03.001. Epub 2016 Mar 4.

PMID:
26953744
33.

Expanding the modular ester fermentative pathways for combinatorial biosynthesis of esters from volatile organic acids.

Layton DS, Trinh CT.

Biotechnol Bioeng. 2016 Aug;113(8):1764-76. doi: 10.1002/bit.25947. Epub 2016 Feb 23.

PMID:
26853081
34.

The crystal structure of the Hazara virus nucleocapsid protein.

Surtees R, Ariza A, Punch EK, Trinh CH, Dowall SD, Hewson R, Hiscox JA, Barr JN, Edwards TA.

BMC Struct Biol. 2015 Dec 29;15:24. doi: 10.1186/s12900-015-0051-3.

35.

Activating and Elucidating Metabolism of Complex Sugars in Yarrowia lipolytica.

Ryu S, Hipp J, Trinh CT.

Appl Environ Microbiol. 2015 Dec 18;82(4):1334-1345. doi: 10.1128/AEM.03582-15. Print 2016 Feb 15. Erratum in: Appl Environ Microbiol. 2016 Apr 15;82(8):2572.

36.

Evaluation of fluoropyruvate as nucleophile in reactions catalysed by N-acetyl neuraminic acid lyase variants: scope, limitations and stereoselectivity.

Stockwell J, Daniels AD, Windle CL, Harman TA, Woodhall T, Lebl T, Trinh CH, Mulholland K, Pearson AR, Berry A, Nelson A.

Org Biomol Chem. 2016 Jan 7;14(1):105-12. doi: 10.1039/c5ob02037a. Epub 2015 Nov 5.

37.

Elucidating central metabolic redox obstacles hindering ethanol production in Clostridium thermocellum.

Thompson RA, Layton DS, Guss AM, Olson DG, Lynd LR, Trinh CT.

Metab Eng. 2015 Nov;32:207-219. doi: 10.1016/j.ymben.2015.10.004. Epub 2015 Oct 21.

PMID:
26497628
38.

Rational design of efficient modular cells.

Trinh CT, Liu Y, Conner DJ.

Metab Eng. 2015 Nov;32:220-231. doi: 10.1016/j.ymben.2015.10.005. Epub 2015 Oct 21.

PMID:
26497627
39.

The structure of the Caenorhabditis elegans manganese superoxide dismutase MnSOD-3-azide complex.

Hunter GJ, Trinh CH, Bonetta R, Stewart EE, Cabelli DE, Hunter T.

Protein Sci. 2015 Nov;24(11):1777-88. doi: 10.1002/pro.2768. Epub 2015 Aug 27.

40.

Symmetry-breaking charge transfer in a zinc chlorodipyrrin acceptor for high open circuit voltage organic photovoltaics.

Bartynski AN, Gruber M, Das S, Rangan S, Mollinger S, Trinh C, Bradforth SE, Vandewal K, Salleo A, Bartynski RA, Bruetting W, Thompson ME.

J Am Chem Soc. 2015 Apr 29;137(16):5397-405. doi: 10.1021/jacs.5b00146. Epub 2015 Apr 14.

PMID:
25826321
41.

Simultaneous saccharification and fermentation of cellulose in ionic liquid for efficient production of α-ketoglutaric acid by Yarrowia lipolytica.

Ryu S, Labbé N, Trinh CT.

Appl Microbiol Biotechnol. 2015 May;99(10):4237-44. doi: 10.1007/s00253-015-6521-5. Epub 2015 Mar 19.

PMID:
25783627
42.

Engineering modular ester fermentative pathways in Escherichia coli.

Layton DS, Trinh CT.

Metab Eng. 2014 Nov;26:77-88. doi: 10.1016/j.ymben.2014.09.006. Epub 2014 Oct 2.

PMID:
25281839
43.

Symmetry-Breaking Charge Transfer of Visible Light Absorbing Systems: Zinc Dipyrrins.

Trinh C, Kirlikovali K, Das S, Ener ME, Gray HB, Djurovich P, Bradforth SE, Thompson ME.

J Phys Chem C Nanomater Interfaces. 2014 Sep 25;118(38):21834-21845. Epub 2014 Aug 27.

44.

The Src homology-2 protein Shb modulates focal adhesion kinase signaling in a BCR-ABL myeloproliferative disorder causing accelerated progression of disease.

Gustafsson K, Jamalpour M, Trinh C, Kharas MG, Welsh M.

J Hematol Oncol. 2014 Jun 21;7:45. doi: 10.1186/1756-8722-7-45.

45.

Enhancing fatty acid ethyl ester production in Saccharomyces cerevisiae through metabolic engineering and medium optimization.

Thompson RA, Trinh CT.

Biotechnol Bioeng. 2014 Nov;111(11):2200-8. doi: 10.1002/bit.25292. Epub 2014 Jul 14.

PMID:
24895195
46.

Investigating cataract referral practices used by Australian optometrists.

Quang Do V, Li R, Ma M, Pooley C, Trinh C, Peattie L, Palagyi A, McCluskey P, Keay L.

Clin Exp Optom. 2014 Jul;97(4):356-63. doi: 10.1111/cxo.12142. Epub 2014 Mar 4.

47.

Reaction mechanism of N-acetylneuraminic acid lyase revealed by a combination of crystallography, QM/MM simulation, and mutagenesis.

Daniels AD, Campeotto I, van der Kamp MW, Bolt AH, Trinh CH, Phillips SE, Pearson AR, Nelson A, Mulholland AJ, Berry A.

ACS Chem Biol. 2014 Apr 18;9(4):1025-32. doi: 10.1021/cb500067z. Epub 2014 Feb 21.

48.

Crystal structure of the essential transcription antiterminator M2-1 protein of human respiratory syncytial virus and implications of its phosphorylation.

Tanner SJ, Ariza A, Richard CA, Kyle HF, Dods RL, Blondot ML, Wu W, Trincão J, Trinh CH, Hiscox JA, Carroll MW, Silman NJ, Eléouët JF, Edwards TA, Barr JN.

Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1580-5. doi: 10.1073/pnas.1317262111. Epub 2014 Jan 13.

49.

Additive antiemetic efficacy of low-doses of the cannabinoid CB(1/2) receptor agonist Δ(9)-THC with ultralow-doses of the vanilloid TRPV1 receptor agonist resiniferatoxin in the least shrew (Cryptotis parva).

Darmani NA, Chebolu S, Zhong W, Trinh C, McClanahan B, Brar RS.

Eur J Pharmacol. 2014 Jan 5;722:147-55. doi: 10.1016/j.ejphar.2013.08.051. Epub 2013 Oct 22.

PMID:
24157976
50.

Efficient energy sensitization of C60 and application to organic photovoltaics.

Trinh C, Kirlikovali KO, Bartynski AN, Tassone CJ, Toney MF, Burkhard GF, McGehee MD, Djurovich PI, Thompson ME.

J Am Chem Soc. 2013 Aug 14;135(32):11920-8. doi: 10.1021/ja4043356. Epub 2013 Aug 2.

PMID:
23859220

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