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Items: 1 to 50 of 166

1.

Multiple intrasyntenic rearrangements and rapid speciation in voles.

Romanenko SA, Serdyukova NA, Perelman PL, Trifonov VA, Golenishchev FN, Bulatova NS, Stanyon R, Graphodatsky AS.

Sci Rep. 2018 Oct 8;8(1):14980. doi: 10.1038/s41598-018-33300-6.

2.

B Chromosomes of the Asian Seabass (Lates calcarifer) Contribute to Genome Variations at the Level of Individuals and Populations.

Komissarov A, Vij S, Yurchenko A, Trifonov V, Thevasagayam N, Saju J, Sridatta PSR, Purushothaman K, Graphodatsky A, Orbán L, Kuznetsova I.

Genes (Basel). 2018 Sep 20;9(10). pii: E464. doi: 10.3390/genes9100464.

3.

First report on B chromosome content in a reptilian species: the case of Anolis carolinensis.

Kichigin IG, Lisachov AP, Giovannotti M, Makunin AI, Kabilov MR, O'Brien PCM, Ferguson-Smith MA, Graphodatsky AS, Trifonov VA.

Mol Genet Genomics. 2018 Aug 27. doi: 10.1007/s00438-018-1483-9. [Epub ahead of print]

PMID:
30146671
4.

Sequencing of Supernumerary Chromosomes of Red Fox and Raccoon Dog Confirms a Non-Random Gene Acquisition by B Chromosomes.

Makunin AI, Romanenko SA, Beklemisheva VR, Perelman PL, Druzhkova AS, Petrova KO, Prokopov DY, Chernyaeva EN, Johnson JL, Kukekova AV, Yang F, Ferguson-Smith MA, Graphodatsky AS, Trifonov VA.

Genes (Basel). 2018 Aug 10;9(8). pii: E405. doi: 10.3390/genes9080405.

5.

Co-regulatory networks of human serum proteins link genetics to disease.

Emilsson V, Ilkov M, Lamb JR, Finkel N, Gudmundsson EF, Pitts R, Hoover H, Gudmundsdottir V, Horman SR, Aspelund T, Shu L, Trifonov V, Sigurdsson S, Manolescu A, Zhu J, Olafsson Ö, Jakobsdottir J, Lesley SA, To J, Zhang J, Harris TB, Launer LJ, Zhang B, Eiriksdottir G, Yang X, Orth AP, Jennings LL, Gudnason V.

Science. 2018 Aug 24;361(6404):769-773. doi: 10.1126/science.aaq1327. Epub 2018 Aug 2.

PMID:
30072576
6.

Naked mole rat cells display more efficient excision repair than mouse cells.

Evdokimov A, Kutuzov M, Petruseva I, Lukjanchikova N, Kashina E, Kolova E, Zemerova T, Romanenko S, Perelman P, Prokopov D, Seluanov A, Gorbunova V, Graphodatsky A, Trifonov V, Khodyreva S, Lavrik O.

Aging (Albany NY). 2018 Jun 20;10(6):1454-1473. doi: 10.18632/aging.101482.

7.

Diversity of Immunoglobulin Light Chain Genes in Non-Teleost Ray-Finned Fish Uncovers IgL Subdivision into Five Ancient Isotypes.

Guselnikov SV, Baranov KO, Najakshin AM, Mechetina LV, Chikaev NA, Makunin AI, Kulemzin SV, Andreyushkova DA, Stöck M, Wuertz S, Gessner J, Warren WC, Schartl M, Trifonov VA, Taranin AV.

Front Immunol. 2018 May 28;9:1079. doi: 10.3389/fimmu.2018.01079. eCollection 2018.

8.

Population genetic structure and phylogeography of sterlet (Acipenser ruthenus, Acipenseridae) in the Ob and Yenisei river basins.

Pobedintseva MA, Makunin AI, Kichigin IG, Kulemzina AI, Serdyukova NA, Romanenko SA, Vorobieva NV, Interesova EA, Korentovich MA, Zaytsev VF, Mischenko AV, Zadelenov VA, Yurchenko AA, Sherbakov DY, Graphodatsky AS, Trifonov VA.

Mitochondrial DNA A DNA Mapp Seq Anal. 2018 May 2:1-9. doi: 10.1080/24701394.2018.1467409. [Epub ahead of print]

PMID:
29716429
9.

Molecular Cytogenetic Analysis of One African and Five Asian Macaque Species Reveals Identical Karyotypes as in Mandrill.

Sangpakdee W, Tanomtong A, Chaveerach A, Pinthong K, Trifonov V, Loth K, Hensel C, Liehr T, Weise A, Fan X.

Curr Genomics. 2018 Apr;19(3):207-215. doi: 10.2174/1389202918666170721115047.

10.

Low-pass single-chromosome sequencing of human small supernumerary marker chromosomes (sSMCs) and Apodemus B chromosomes.

Makunin AI, Rajičić M, Karamysheva TV, Romanenko SA, Druzhkova AS, Blagojević J, Vujošević M, Rubtsov NB, Graphodatsky AS, Trifonov VA.

Chromosoma. 2018 Sep;127(3):301-311. doi: 10.1007/s00412-018-0662-0. Epub 2018 Jan 30.

PMID:
29380046
11.

Natural Killer Cells Control Tumor Growth by Sensing a Growth Factor.

Barrow AD, Edeling MA, Trifonov V, Luo J, Goyal P, Bohl B, Bando JK, Kim AH, Walker J, Andahazy M, Bugatti M, Melocchi L, Vermi W, Fremont DH, Cox S, Cella M, Schmedt C, Colonna M.

Cell. 2018 Jan 25;172(3):534-548.e19. doi: 10.1016/j.cell.2017.11.037. Epub 2017 Dec 21.

PMID:
29275861
12.

Correction to: Whole chromosome painting reveals independent origin of sex chromosomes in closely related forms of a fish species.

Cioffi MB, Sánchez A, Marchal JA, Kosyakova N, Liehr T, Trifonov V, Bertollo LAC.

Genetica. 2018 Feb;146(1):123. doi: 10.1007/s10709-017-0001-z.

PMID:
29260363
13.

Next Generation Sequencing of Chromosome-Specific Libraries Sheds Light on Genome Evolution in Paleotetraploid Sterlet (Acipenser ruthenus).

Andreyushkova DA, Makunin AI, Beklemisheva VR, Romanenko SA, Druzhkova AS, Biltueva LB, Serdyukova NA, Graphodatsky AS, Trifonov VA.

Genes (Basel). 2017 Nov 10;8(11). pii: E318. doi: 10.3390/genes8110318.

14.

Tracking the evolutionary pathway of sex chromosomes among fishes: characterizing the unique XX/XY1Y2 system in Hoplias malabaricus (Teleostei, Characiformes).

de Oliveira EA, Sember A, Bertollo LAC, Yano CF, Ezaz T, Moreira-Filho O, Hatanaka T, Trifonov V, Liehr T, Al-Rikabi ABH, Ráb P, Pains H, Cioffi MB.

Chromosoma. 2018 Mar;127(1):115-128. doi: 10.1007/s00412-017-0648-3. Epub 2017 Nov 9.

PMID:
29124392
15.

Immunocytological analysis of meiotic recombination in two anole lizards (Squamata, Dactyloidae).

Lisachov AP, Trifonov VA, Giovannotti M, Ferguson-Smith MA, Borodin PM.

Comp Cytogenet. 2017 Mar 6;11(1):129-141. doi: 10.3897/CompCytogen.v11i1.10916. eCollection 2017.

16.

Genomic Organization and Physical Mapping of Tandemly Arranged Repetitive DNAs in Sterlet (Acipenser ruthenus).

Biltueva LS, Prokopov DY, Makunin AI, Komissarov AS, Kudryavtseva AV, Lemskaya NA, Vorobieva NV, Serdyukova NA, Romanenko SA, Gladkikh OL, Graphodatsky AS, Trifonov VA.

Cytogenet Genome Res. 2017;152(3):148-157. doi: 10.1159/000479472. Epub 2017 Aug 30.

PMID:
28850953
17.

Karyotype Evolution and Phylogenetic Relationships of Cricetulus sokolovi Orlov et Malygin 1988 (Cricetidae, Rodentia) Inferred from Chromosomal Painting and Molecular Data.

Poplavskaya NS, Romanenko SA, Serdyukova NA, Trifonov VA, Yang F, Nie W, Wang J, Bannikova AA, Surov AV, Lebedev VS.

Cytogenet Genome Res. 2017;152(2):65-72. doi: 10.1159/000477521. Epub 2017 Jul 19.

PMID:
28719894
18.

Mitochondrial DNA analysis of ancient sheep from Altai.

Dymova MA, Zadorozhny AV, Mishukova OV, Khrapov EA, Druzhkova AS, Trifonov VA, Kichigin IG, Tishkin AA, Grushin SP, Filipenko ML.

Anim Genet. 2017 Oct;48(5):615-618. doi: 10.1111/age.12569. Epub 2017 May 31.

PMID:
28568904
19.

The origin of B chromosomes in yellow-necked mice (Apodemus flavicollis)-Break rules but keep playing the game.

Rajičić M, Romanenko SA, Karamysheva TV, Blagojević J, Adnađević T, Budinski I, Bogdanov AS, Trifonov VA, Rubtsov NB, Vujošević M.

PLoS One. 2017 Mar 22;12(3):e0172704. doi: 10.1371/journal.pone.0172704. eCollection 2017.

20.

Heteromorphism of "Homomorphic" Sex Chromosomes in Two Anole Species (Squamata, Dactyloidae) Revealed by Synaptonemal Complex Analysis.

Lisachov AP, Trifonov VA, Giovannotti M, Ferguson-Smith MA, Borodin PM.

Cytogenet Genome Res. 2017;151(2):89-95. doi: 10.1159/000460829. Epub 2017 Mar 18.

PMID:
28315859
21.

Highly conserved Z and molecularly diverged W chromosomes in the fish genus Triportheus (Characiformes, Triportheidae).

Yano CF, Bertollo LA, Ezaz T, Trifonov V, Sember A, Liehr T, Cioffi MB.

Heredity (Edinb). 2017 Mar;118(3):276-283. doi: 10.1038/hdy.2016.83. Epub 2016 Dec 21.

22.

Mitochondrial DNA D-loop haplogroup contributions to the genetic diversity of East European domestic chickens from Russia.

Dyomin AG, Danilova MI, Mwacharo JM, Masharsky AE, Panteleev AV, Druzhkova AS, Trifonov VA, Galkina SA.

J Anim Breed Genet. 2017 Apr;134(2):98-108. doi: 10.1111/jbg.12248. Epub 2016 Dec 18.

PMID:
27988972
23.

Rapid Karyotype Evolution in Lasiopodomys Involved at Least Two Autosome - Sex Chromosome Translocations.

Gladkikh OL, Romanenko SA, Lemskaya NA, Serdyukova NA, O'Brien PC, Kovalskaya JM, Smorkatcheva AV, Golenishchev FN, Perelman PL, Trifonov VA, Ferguson-Smith MA, Yang F, Graphodatsky AS.

PLoS One. 2016 Dec 9;11(12):e0167653. doi: 10.1371/journal.pone.0167653. eCollection 2016.

24.

Correction: Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Katneni VK, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L.

PLoS Genet. 2016 Dec 9;12(12):e1006500. doi: 10.1371/journal.pgen.1006500. eCollection 2016 Dec.

25.

Contrasting origin of B chromosomes in two cervids (Siberian roe deer and grey brocket deer) unravelled by chromosome-specific DNA sequencing.

Makunin AI, Kichigin IG, Larkin DM, O'Brien PC, Ferguson-Smith MA, Yang F, Proskuryakova AA, Vorobieva NV, Chernyaeva EN, O'Brien SJ, Graphodatsky AS, Trifonov VA.

BMC Genomics. 2016 Aug 11;17(1):618. doi: 10.1186/s12864-016-2933-6.

26.

Comprehensive characterization of evolutionary conserved breakpoints in four New World Monkey karyotypes compared to Chlorocebus aethiops and Homo sapiens.

Fan X, Supiwong W, Weise A, Mrasek K, Kosyakova N, Tanomtong A, Pinthong K, Trifonov VA, Cioffi Mde B, Grothmann P, Liehr T, Oliveira EH.

Heliyon. 2015 Nov 24;1(3):e00042. doi: 10.1016/j.heliyon.2015.e00042. eCollection 2015 Nov.

27.

Evolutionary dynamics of Anolis sex chromosomes revealed by sequencing of flow sorting-derived microchromosome-specific DNA.

Kichigin IG, Giovannotti M, Makunin AI, Ng BL, Kabilov MR, Tupikin AE, Barucchi VC, Splendiani A, Ruggeri P, Rens W, O'Brien PC, Ferguson-Smith MA, Graphodatsky AS, Trifonov VA.

Mol Genet Genomics. 2016 Oct;291(5):1955-66. doi: 10.1007/s00438-016-1230-z. Epub 2016 Jul 18.

PMID:
27431992
28.

Cytogenetic Insights into the Evolution of Chromosomes and Sex Determination Reveal Striking Homology of Turtle Sex Chromosomes to Amphibian Autosomes.

Montiel EE, Badenhorst D, Lee LS, Literman R, Trifonov V, Valenzuela N.

Cytogenet Genome Res. 2016;148(4):292-304. doi: 10.1159/000447478. Epub 2016 Jul 16.

PMID:
27423490
29.

Evolutionary plasticity of acipenseriform genomes.

Trifonov VA, Romanenko SS, Beklemisheva VR, Biltueva LS, Makunin AI, Lemskaya NA, Kulemzina AI, Stanyon R, Graphodatsky AS.

Chromosoma. 2016 Sep;125(4):661-8. doi: 10.1007/s00412-016-0609-2. Epub 2016 Jul 14. Review.

PMID:
27411693
30.

Evidence for Sex Chromosome Turnover in Proteid Salamanders.

Sessions SK, Bizjak Mali L, Green DM, Trifonov V, Ferguson-Smith M.

Cytogenet Genome Res. 2016;148(4):305-13. doi: 10.1159/000446882. Epub 2016 Jun 29.

PMID:
27351721
31.

LINE-related component of mouse heterochromatin and complex chromocenters' composition.

Kuznetsova IS, Ostromyshenskii DI, Komissarov AS, Prusov AN, Waisertreiger IS, Gorbunova AV, Trifonov VA, Ferguson-Smith MA, Podgornaya OI.

Chromosome Res. 2016 Sep;24(3):309-23. doi: 10.1007/s10577-016-9525-9. Epub 2016 Apr 26.

PMID:
27116673
32.

The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts.

Bian C, Hu Y, Ravi V, Kuznetsova IS, Shen X, Mu X, Sun Y, You X, Li J, Li X, Qiu Y, Tay BH, Thevasagayam NM, Komissarov AS, Trifonov V, Kabilov M, Tupikin A, Luo J, Liu Y, Song H, Liu C, Wang X, Gu D, Yang Y, Li W, Polgar G, Fan G, Zeng P, Zhang H, Xiong Z, Tang Z, Peng C, Ruan Z, Yu H, Chen J, Fan M, Huang Y, Wang M, Zhao X, Hu G, Yang H, Wang J, Wang J, Xu X, Song L, Xu G, Xu P, Xu J, O'Brien SJ, Orbán L, Venkatesh B, Shi Q.

Sci Rep. 2016 Apr 19;6:24501. doi: 10.1038/srep24501.

33.

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding.

Vij S, Kuhl H, Kuznetsova IS, Komissarov A, Yurchenko AA, Van Heusden P, Singh S, Thevasagayam NM, Prakki SR, Purushothaman K, Saju JM, Jiang J, Mbandi SK, Jonas M, Hin Yan Tong A, Mwangi S, Lau D, Ngoh SY, Liew WC, Shen X, Hon LS, Drake JP, Boitano M, Hall R, Chin CS, Lachumanan R, Korlach J, Trifonov V, Kabilov M, Tupikin A, Green D, Moxon S, Garvin T, Sedlazeck FJ, Vurture GW, Gopalapillai G, Kumar Katneni V, Noble TH, Scaria V, Sivasubbu S, Jerry DR, O'Brien SJ, Schatz MC, Dalmay T, Turner SW, Lok S, Christoffels A, Orbán L.

PLoS Genet. 2016 Apr 15;12(4):e1005954. doi: 10.1371/journal.pgen.1005954. eCollection 2016 Apr. Erratum in: PLoS Genet. 2016 Dec 9;12 (12 ):e1006500.

34.

New insights into sex chromosome evolution in anole lizards (Reptilia, Dactyloidae).

Giovannotti M, Trifonov VA, Paoletti A, Kichigin IG, O'Brien PC, Kasai F, Giovagnoli G, Ng BL, Ruggeri P, Cerioni PN, Splendiani A, Pereira JC, Olmo E, Rens W, Caputo Barucchi V, Ferguson-Smith MA.

Chromosoma. 2017 Mar;126(2):245-260. doi: 10.1007/s00412-016-0585-6. Epub 2016 Mar 22.

PMID:
27001473
35.

Uncovering the Ancestry of B Chromosomes in Moenkhausia sanctaefilomenae (Teleostei, Characidae).

Utsunomia R, Silva DM, Ruiz-Ruano FJ, Araya-Jaime C, Pansonato-Alves JC, Scacchetti PC, Hashimoto DT, Oliveira C, Trifonov VA, Porto-Foresti F, Camacho JP, Foresti F.

PLoS One. 2016 Mar 2;11(3):e0150573. doi: 10.1371/journal.pone.0150573. eCollection 2016.

36.

DIVERSITY OF SEX DETERMINING MECHANISMS IN RAY-FINNED FISHES (ACTINOPTERYGII).

Kichigin IG, Andreyushkova DA, Pobedintseva MA, Trifonov VA.

Tsitologiia. 2016;58(5):405-11. English, Russian.

PMID:
30188643
37.

Genome-wide comparative chromosome maps of Arvicola amphibius, Dicrostonyx torquatus, and Myodes rutilus.

Romanenko SA, Lemskaya NA, Trifonov VA, Serdyukova NA, O'Brien PC, Bulatova NSh, Golenishchev FN, Ferguson-Smith MA, Yang F, Graphodatsky AS.

Chromosome Res. 2016 May;24(2):145-59. doi: 10.1007/s10577-015-9504-6. Epub 2015 Nov 26.

PMID:
26611440
38.

[ANESTHESIA FOR AIRWAY ENDOSCOPIC RECANALISATION WITH SELFEXPANDED STENTS].

Khasanov AF, Trifonov VR, Murav'ov VY, Khasanova NA, Ivanov AI, Ivanovskaya KA.

Anesteziol Reanimatol. 2015 Jul-Aug;60(4):11-9. Russian.

PMID:
26596025
39.

Segmental paleotetraploidy revealed in sterlet (Acipenser ruthenus) genome by chromosome painting.

Romanenko SA, Biltueva LS, Serdyukova NA, Kulemzina AI, Beklemisheva VR, Gladkikh OL, Lemskaya NA, Interesova EA, Korentovich MA, Vorobieva NV, Graphodatsky AS, Trifonov VA.

Mol Cytogenet. 2015 Nov 19;8:90. doi: 10.1186/s13039-015-0194-8. eCollection 2015.

40.

[Ancient DNA: Results and Prospects (the 30th Anniversary)].

Druzhkova AS, Vorobieva NV, Trifonov VA, Graphodatsky AS.

Genetika. 2015 Jun;51(6):627-43. Review. Russian.

PMID:
26310027
41.

[DYNAMICS OF APOPTOTIC MARKERS (INTERLEUKIN-2 AND TNF-α) IN THE BLOOD SERUM OF CHILDREN WITH CHRONIC GASTRODUODENITES].

Reuka EY, Trifonov VD, Chernenkov YV, Rodionova TV.

Eksp Klin Gastroenterol. 2015;(1):21-3. Russian.

PMID:
26281156
42.

Comparative Chromosome Painting and NOR Distribution Suggest a Complex Hybrid Origin of Triploid Lepidodactylus lugubris (Gekkonidae).

Trifonov VA, Paoletti A, Caputo Barucchi V, Kalinina T, O'Brien PC, Ferguson-Smith MA, Giovannotti M.

PLoS One. 2015 Jul 6;10(7):e0132380. doi: 10.1371/journal.pone.0132380. eCollection 2015.

43.

[The program of accelerated rehabilitation after esophagoplasty (fast track surgery) in esophageal cancer surgery].

Khasanov AF, Sigal EI, Trifonov VR, Khasanova NA, Baisheva NA, Shaĭmuratov IM, Gubaĭdullin SR, Sigal AM.

Khirurgiia (Mosk). 2015;(2):37-43. doi: 10.17116/hirurgia2015237-43. Russian.

PMID:
26031818
44.

A First Generation Comparative Chromosome Map between Guinea Pig (Cavia porcellus) and Humans.

Romanenko SA, Perelman PL, Trifonov VA, Serdyukova NA, Li T, Fu B, O'Brien PC, Ng BL, Nie W, Liehr T, Stanyon R, Graphodatsky AS, Yang F.

PLoS One. 2015 May 26;10(5):e0127937. doi: 10.1371/journal.pone.0127937. eCollection 2015.

45.

Comprehensive Analyses of White-Handed Gibbon Chromosomes Enables Access to 92 Evolutionary Conserved Breakpoints Compared to the Human Genome.

Weise A, Kosyakova N, Voigt M, Aust N, Mrasek K, Löhmer S, Rubtsov N, Karamysheva TV, Trifonov VA, Hardekopf D, Jančušková T, Pekova S, Wilhelm K, Liehr T, Fan X.

Cytogenet Genome Res. 2015;145(1):42-9. doi: 10.1159/000381764. Epub 2015 Apr 24.

46.

Low rate of interchromosomal rearrangements during old radiation of gekkotan lizards (Squamata: Gekkota).

Johnson Pokorná M, Trifonov VA, Rens W, Ferguson-Smith MA, Kratochvíl L.

Chromosome Res. 2015 Jun;23(2):299-309. doi: 10.1007/s10577-015-9468-6. Epub 2015 Feb 11.

PMID:
25665924
47.

A cytogenetic and comparative map of camelid chromosome 36 and the minute in alpacas.

Avila F, Baily MP, Merriwether DA, Trifonov VA, Rubes J, Kutzler MA, Chowdhary R, Janečka J, Raudsepp T.

Chromosome Res. 2015 Jun;23(2):237-51. doi: 10.1007/s10577-014-9463-3. Epub 2015 Jan 30.

PMID:
25634498
48.

Viral diversity and clonal evolution from unphased genomic data.

Khiabanian H, Carpenter Z, Kugelman J, Chan J, Trifonov V, Nagle E, Warren T, Iversen P, Bavari S, Palacios G, Rabadan R.

BMC Genomics. 2014;15 Suppl 6:S17. doi: 10.1186/1471-2164-15-S6-S17. Epub 2014 Oct 17.

49.

Genes on B chromosomes of vertebrates.

Makunin AI, Dementyeva PV, Graphodatsky AS, Volobouev VT, Kukekova AV, Trifonov VA.

Mol Cytogenet. 2014 Dec 17;7(1):99. doi: 10.1186/s13039-014-0099-y. eCollection 2014.

50.

SAVI: a statistical algorithm for variant frequency identification.

Trifonov V, Pasqualucci L, Tiacci E, Falini B, Rabadan R.

BMC Syst Biol. 2013;7 Suppl 2:S2. doi: 10.1186/1752-0509-7-S2-S2. Epub 2013 Oct 14.

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