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Items: 37

1.

PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases.

Kubota KA, Wolfgang WJ, Baker DJ, Boxrud D, Turner L, Trees E, Carleton HA, Gerner-Smidt P.

Public Health Rep. 2019 Nov/Dec;134(2_suppl):22S-28S. doi: 10.1177/0033354919881650.

PMID:
31682558
2.

Interpretation of Whole-Genome Sequencing for Enteric Disease Surveillance and Outbreak Investigation.

Besser JM, Carleton HA, Trees E, Stroika SG, Hise K, Wise M, Gerner-Smidt P.

Foodborne Pathog Dis. 2019 Jul;16(7):504-512. doi: 10.1089/fpd.2019.2650. Epub 2019 Jun 27.

3.

Metagenomic Approaches for Public Health Surveillance of Foodborne Infections: Opportunities and Challenges.

Carleton HA, Besser J, Williams-Newkirk AJ, Huang A, Trees E, Gerner-Smidt P.

Foodborne Pathog Dis. 2019 Jul;16(7):474-479. doi: 10.1089/fpd.2019.2636. Epub 2019 Jun 6.

4.

Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016.

Pattabiraman V, Katz LS, Chen JC, McCullough AE, Trees E.

PLoS One. 2018 Dec 31;13(12):e0208735. doi: 10.1371/journal.pone.0208735. eCollection 2018.

5.

Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States.

Zhang S, Li S, Gu W, den Bakker H, Boxrud D, Taylor A, Roe C, Driebe E, Engelthaler DM, Allard M, Brown E, McDermott P, Zhao S, Bruce BB, Trees E, Fields PI, Deng X.

Emerg Infect Dis. 2019 Jan;25(1):82-91. doi: 10.3201/eid2501.180835.

6.

Use of whole genome sequencing to complement characterisation of a typhoid fever outbreak among a Marshallese community: Oklahoma, 2015.

Burnsed LJ, Kovar LD, Angelo KM, Trees EK, Concepción-Acevedo J, McDermott MD, Wagner D, Bradley KK.

Epidemiol Infect. 2018 Sep 21:1-7. doi: 10.1017/S0950268818002601. [Epub ahead of print]

PMID:
30236166
7.

Notes from the Field: Investigation of an Outbreak of Salmonella Paratyphi B Variant L(+) tartrate + (Java) Associated with Ball Python Exposure - United States, 2017.

Krishnasamy V, Stevenson L, Koski L, Kellis M, Schroeder B, Sundararajan M, Ladd-Wilson S, Sampsel A, Mannell M, Classon A, Wagner D, Hise K, Carleton H, Trees E, Schlater L, Lantz K, Nichols M.

MMWR Morb Mortal Wkly Rep. 2018 May 19;67(19):562-563. doi: 10.15585/mmwr.mm6719a7. No abstract available.

8.

Protracted Outbreak of Salmonella Newport Infections Linked to Ground Beef: Possible Role of Dairy Cows - 21 States, 2016-2017.

Marshall KEH, Tewell M, Tecle S, Leeper M, Sinatra J, Kissler B, Fung A, Brown K, Wagner D, Trees E, Hise KB, Chaturvedi V, Schlater LK, Morningstar-Shaw BR, Whitlock L, Holt K, Becker K, Nichols M, Williams IT, Jhung M, Wise ME, Gieraltowski L.

MMWR Morb Mortal Wkly Rep. 2018 Apr 20;67(15):443-446. doi: 10.15585/mmwr.mm6715a2.

9.

Flea market finds and global exports: Four multistate outbreaks of human Salmonella infections linked to small turtles, United States-2015.

Gambino-Shirley K, Stevenson L, Concepción-Acevedo J, Trees E, Wagner D, Whitlock L, Roberts J, Garrett N, Van Duyne S, McAllister G, Schick B, Schlater L, Peralta V, Reporter R, Li L, Waechter H, Gomez T, Fernández Ordenes J, Ulloa S, Ragimbeau C, Mossong J, Nichols M.

Zoonoses Public Health. 2018 Aug;65(5):560-568. doi: 10.1111/zph.12466. Epub 2018 Mar 25.

PMID:
29577654
10.

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance.

Timme RE, Rand H, Shumway M, Trees EK, Simmons M, Agarwala R, Davis S, Tillman GE, Defibaugh-Chavez S, Carleton HA, Klimke WA, Katz LS.

PeerJ. 2017 Oct 6;5:e3893. doi: 10.7717/peerj.3893. eCollection 2017.

11.

Shiga Toxin-Producing E. coli Infections Associated with Flour.

Crowe SJ, Bottichio L, Shade LN, Whitney BM, Corral N, Melius B, Arends KD, Donovan D, Stone J, Allen K, Rosner J, Beal J, Whitlock L, Blackstock A, Wetherington J, Newberry LA, Schroeder MN, Wagner D, Trees E, Viazis S, Wise ME, Neil KP.

N Engl J Med. 2017 Nov 23;377(21):2036-2043. doi: 10.1056/NEJMoa1615910.

12.

Next-generation sequencing technologies and their application to the study and control of bacterial infections.

Besser J, Carleton HA, Gerner-Smidt P, Lindsey RL, Trees E.

Clin Microbiol Infect. 2018 Apr;24(4):335-341. doi: 10.1016/j.cmi.2017.10.013. Epub 2017 Oct 23. Review.

13.

High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps.

Lindsey RL, Batra D, Rowe L, N Loparev V, Juieng P, Garcia-Toledo L, Bicknese A, Stripling D, Martin H, Chen J, Strockbine N, Trees E.

Genome Announc. 2017 Aug 31;5(35). pii: e00906-17. doi: 10.1128/genomeA.00906-17.

14.

PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance.

Nadon C, Van Walle I, Gerner-Smidt P, Campos J, Chinen I, Concepcion-Acevedo J, Gilpin B, Smith AM, Man Kam K, Perez E, Trees E, Kubota K, Takkinen J, Nielsen EM, Carleton H; FWD-NEXT Expert Panel.

Euro Surveill. 2017 Jun 8;22(23). pii: 30544. doi: 10.2807/1560-7917.ES.2017.22.23.30544. Review.

15.

Utility of Combining Whole Genome Sequencing with Traditional Investigational Methods To Solve Foodborne Outbreaks of Salmonella Infections Associated with Chicken: A New Tool for Tackling This Challenging Food Vehicle.

Crowe SJ, Green A, Hernandez K, Peralta V, Bottichio L, Defibaugh-Chavez S, Douris A, Gieraltowski L, Hise K, La-Pham K, Neil KP, Simmons M, Tillman G, Tolar B, Wagner D, Wasilenko J, Holt K, Trees E, Wise ME.

J Food Prot. 2017 Apr;80(4):654-660. doi: 10.4315/0362-028X.JFP-16-364.

16.

Multi-laboratory validation study of multilocus variable-number tandem repeat analysis (MLVA) for Salmonella enterica serovar Enteritidis, 2015.

Peters T, Bertrand S, Björkman JT, Brandal LT, Brown DJ, Erdõsi T, Heck M, Ibrahem S, Johansson K, Kornschober C, Kotila SM, Le Hello S, Lienemann T, Mattheus W, Nielsen EM, Ragimbeau C, Rumore J, Sabol A, Torpdahl M, Trees E, Tuohy A, de Pinna E.

Euro Surveill. 2017 Mar 2;22(9). pii: 30477. doi: 10.2807/1560-7917.ES.2017.22.9.30477.

17.

Laboratory Investigation of Salmonella enterica serovar Poona Outbreak in California: Comparison of Pulsed-Field Gel Electrophoresis (PFGE) and Whole Genome Sequencing (WGS) Results.

Kozyreva VK, Crandall J, Sabol A, Poe A, Zhang P, Concepción-Acevedo J, Schroeder MN, Wagner D, Higa J, Trees E, Chaturvedi V.

PLoS Curr. 2016 Nov 22;8. pii: ecurrents.outbreaks.1bb3e36e74bd5779bc43ac3a8dae52e6. doi: 10.1371/currents.outbreaks.1bb3e36e74bd5779bc43ac3a8dae52e6.

18.

High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.

Lindsey RL, Rowe L, Garcia-Toledo L, Loparev V, Knipe K, Stripling D, Martin H, Trees E, Juieng P, Batra D, Strockbine N.

Genome Announc. 2016 Jun 30;4(3). pii: e00626-16. doi: 10.1128/genomeA.00626-16.

19.

Implementation of Nationwide Real-time Whole-genome Sequencing to Enhance Listeriosis Outbreak Detection and Investigation.

Jackson BR, Tarr C, Strain E, Jackson KA, Conrad A, Carleton H, Katz LS, Stroika S, Gould LH, Mody RK, Silk BJ, Beal J, Chen Y, Timme R, Doyle M, Fields A, Wise M, Tillman G, Defibaugh-Chavez S, Kucerova Z, Sabol A, Roache K, Trees E, Simmons M, Wasilenko J, Kubota K, Pouseele H, Klimke W, Besser J, Brown E, Allard M, Gerner-Smidt P.

Clin Infect Dis. 2016 Aug 1;63(3):380-6. doi: 10.1093/cid/ciw242. Epub 2016 Apr 18.

20.

Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli.

Timmons C, Trees E, Ribot EM, Gerner-Smidt P, LaFon P, Im S, Ma LM.

J Microbiol Methods. 2016 Jun;125:70-80. doi: 10.1016/j.mimet.2016.04.005. Epub 2016 Apr 9.

21.

Outbreaks of Salmonellosis From Small Turtles.

Walters MS, Simmons L, Anderson TC, DeMent J, Van Zile K, Matthias LP, Etheridge S, Baker R, Healan C, Bagby R, Reporter R, Kimura A, Harrison C, Ajileye K, Borders J, Crocker K, Smee A, Adams-Cameron M, Joseph LA, Tolar B, Trees E, Sabol A, Garrett N, Bopp C, Bosch S, Behravesh CB.

Pediatrics. 2016 Jan;137(1). doi: 10.1542/peds.2015-1735. Epub 2015 Dec 24.

22.

Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.

Lindsey RL, Knipe K, Rowe L, Garcia-Toledo L, Loparev V, Juieng P, Trees E, Strockbine N, Stripling D, Gerner-Smidt P.

Genome Announc. 2015 Dec 17;3(6). pii: e01496-15. doi: 10.1128/genomeA.01496-15.

23.

Multistate outbreak of listeriosis caused by imported cheese and evidence of cross-contamination of other cheeses, USA, 2012.

Heiman KE, Garalde VB, Gronostaj M, Jackson KA, Beam S, Joseph L, Saupe A, Ricotta E, Waechter H, Wellman A, Adams-Cameron M, Ray G, Fields A, Chen Y, Datta A, Burall L, Sabol A, Kucerova Z, Trees E, Metz M, Leblanc P, Lance S, Griffin PM, Tauxe RV, Silk BJ.

Epidemiol Infect. 2016 Oct;144(13):2698-708. doi: 10.1017/S095026881500117X. Epub 2015 Jun 30.

24.

Outbreak of Salmonella Newport infections linked to cucumbers--United States, 2014.

Angelo KM, Chu A, Anand M, Nguyen TA, Bottichio L, Wise M, Williams I, Seelman S, Bell R, Fatica M, Lance S, Baldwin D, Shannon K, Lee H, Trees E, Strain E, Gieraltowski L; Centers for Disease Control and Prevention (CDC).

MMWR Morb Mortal Wkly Rep. 2015 Feb 20;64(6):144-7.

25.

Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis.

Deng X, Shariat N, Driebe EM, Roe CC, Tolar B, Trees E, Keim P, Zhang W, Dudley EG, Fields PI, Engelthaler DM.

J Clin Microbiol. 2015 Jan;53(1):212-8. doi: 10.1128/JCM.02332-14. Epub 2014 Nov 5.

26.

Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages.

Deng X, Desai PT, den Bakker HC, Mikoleit M, Tolar B, Trees E, Hendriksen RS, Frye JG, Porwollik S, Weimer BC, Wiedmann M, Weinstock GM, Fields PI, McClelland M.

Emerg Infect Dis. 2014 Sep;20(9):1481-9. doi: 10.3201/eid2009.131095.

27.

Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes.

Trees E, Strockbine N, Changayil S, Ranganathan S, Zhao K, Weil R, MacCannell D, Sabol A, Schmidtke A, Martin H, Stripling D, Ribot EM, Gerner-Smidt P.

Genome Announc. 2014 Aug 7;2(4). pii: e00718-14. doi: 10.1128/genomeA.00718-14.

28.

Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.

Lindsey RL, Trees E, Sammons S, Loparev V, Frace M, Strockbine N, Sabol AL, Sowers E, Stripling D, Martin H, Knipe K, Rowe L, Gerner-Smidt P.

Genome Announc. 2014 Jul 10;2(4). pii: e00501-14. doi: 10.1128/genomeA.00501-14.

29.

Multistate outbreak of Salmonella enterica serotype enteritidis infection associated with pet guinea pigs.

Bartholomew ML, Heffernan RT, Wright JG, Klos RF, Monson T, Khan S, Trees E, Sabol A, Willems RA, Flynn R, Deasy MP, Jones B, Davis JP.

Vector Borne Zoonotic Dis. 2014 Jun;14(6):414-21. doi: 10.1089/vbz.2013.1506. Epub 2014 May 27.

PMID:
24866204
30.

Development and application of MLVA methods as a tool for inter-laboratory surveillance.

Nadon CA, Trees E, Ng LK, Møller Nielsen E, Reimer A, Maxwell N, Kubota KA, Gerner-Smidt P; MLVA Harmonization Working Group.

Euro Surveill. 2013 Aug 29;18(35):20565. Review.

31.

Outbreak of Salmonella enterica serotype I 4,5,12:i:- infections: the challenges of hypothesis generation and microwave cooking.

Mody RK, Meyer S, Trees E, White PL, Nguyen T, Sowadsky R, Henao OL, Lafon PC, Austin J, Azzam I, Griffin PM, Tauxe RV, Smith K, Williams IT.

Epidemiol Infect. 2014 May;142(5):1050-60. doi: 10.1017/S0950268813001787. Epub 2013 Aug 5.

PMID:
23916064
32.

Subtyping of Salmonella enterica serovar Newport outbreak isolates by CRISPR-MVLST and determination of the relationship between CRISPR-MVLST and PFGE results.

Shariat N, Kirchner MK, Sandt CH, Trees E, Barrangou R, Dudley EG.

J Clin Microbiol. 2013 Jul;51(7):2328-36. doi: 10.1128/JCM.00608-13. Epub 2013 May 15.

33.

Outbreak of Shiga toxin-producing Escherichia coli (STEC) O157:H7 associated with romaine lettuce consumption, 2011.

Slayton RB, Turabelidze G, Bennett SD, Schwensohn CA, Yaffee AQ, Khan F, Butler C, Trees E, Ayers TL, Davis ML, Laufer AS, Gladbach S, Williams I, Gieraltowski LB.

PLoS One. 2013;8(2):e55300. doi: 10.1371/journal.pone.0055300. Epub 2013 Feb 4.

34.

Outbreak of human Salmonella Typhimurium infections linked to contact with baby poultry from a single agricultural feed store chain and mail-order hatchery, 2009.

Loharikar A, Vawter S, Warren K, Deasy M 3rd, Moll M, Sandt C, Gilhousen R, Villamil E, Rhorer A, Briere E, Schwensohn C, Trees E, Lafon P, Adams JK, Le B, Behravesh CB.

Pediatr Infect Dis J. 2013 Jan;32(1):8-12. doi: 10.1097/INF.0b013e3182755e28.

PMID:
23014358
35.

Epidemiology of a Salmonella enterica subsp. enterica serovar Typhimurium strain associated with a songbird outbreak.

Hernandez SM, Keel K, Sanchez S, Trees E, Gerner-Smidt P, Adams JK, Cheng Y, Ray A 3rd, Martin G, Presotto A, Ruder MG, Brown J, Blehert DS, Cottrell W, Maurer JJ.

Appl Environ Microbiol. 2012 Oct;78(20):7290-8. Epub 2012 Aug 10.

36.

Four multistate outbreaks of human Salmonella infections associated with live poultry contact, United States, 2009.

Loharikar A, Briere E, Schwensohn C, Weninger S, Wagendorf J, Scheftel J, Garvey A, Warren K, Villamil E, Rudroff JA, Kurkjian K, Levine S, Colby K, Morrison B, May A, Anderson S, Daly E, Marsden-Haug N, Erdman MM, Gomez T, Rhorer A, Castleman J, Adams JK, Theobald L, Lafon P, Trees E, Mitchell J, Sotir MJ, Behravesh CB.

Zoonoses Public Health. 2012 Aug;59(5):347-54. doi: 10.1111/j.1863-2378.2012.01461.x. Epub 2012 Feb 28.

PMID:
22372941
37.

A novel vehicle for transmission of Escherichia coli O157:H7 to humans: multistate outbreak of E. coli O157:H7 infections associated with consumption of ready-to-bake commercial prepackaged cookie dough--United States, 2009.

Neil KP, Biggerstaff G, MacDonald JK, Trees E, Medus C, Musser KA, Stroika SG, Zink D, Sotir MJ.

Clin Infect Dis. 2012 Feb 15;54(4):511-8. doi: 10.1093/cid/cir831. Epub 2011 Dec 8.

PMID:
22157169

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