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Items: 21

1.

Transition bias influences the evolution of antibiotic resistance in Mycobacterium tuberculosis.

Payne JL, Menardo F, Trauner A, Borrell S, Gygli SM, Loiseau C, Gagneux S, Hall AR.

PLoS Biol. 2019 May 13;17(5):e3000265. doi: 10.1371/journal.pbio.3000265. eCollection 2019 May.

2.

Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development.

Borrell S, Trauner A, Brites D, Rigouts L, Loiseau C, Coscolla M, Niemann S, De Jong B, Yeboah-Manu D, Kato-Maeda M, Feldmann J, Reinhard M, Beisel C, Gagneux S.

PLoS One. 2019 Mar 25;14(3):e0214088. doi: 10.1371/journal.pone.0214088. eCollection 2019.

3.

Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity.

Menardo F, Loiseau C, Brites D, Coscolla M, Gygli SM, Rutaihwa LK, Trauner A, Beisel C, Borrell S, Gagneux S.

BMC Bioinformatics. 2018 May 2;19(1):164. doi: 10.1186/s12859-018-2164-8.

4.

High-throughput metabolomic analysis predicts mode of action of uncharacterized antimicrobial compounds.

Zampieri M, Szappanos B, Buchieri MV, Trauner A, Piazza I, Picotti P, Gagneux S, Borrell S, Gicquel B, Lelievre J, Papp B, Sauer U.

Sci Transl Med. 2018 Feb 21;10(429). pii: eaal3973. doi: 10.1126/scitranslmed.aal3973.

5.

Strain Diversity and the Evolution of Antibiotic Resistance.

Borrell S, Trauner A.

Adv Exp Med Biol. 2017;1019:263-279. doi: 10.1007/978-3-319-64371-7_14. Review.

PMID:
29116640
6.

The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacy.

Trauner A, Liu Q, Via LE, Liu X, Ruan X, Liang L, Shi H, Chen Y, Wang Z, Liang R, Zhang W, Wei W, Gao J, Sun G, Brites D, England K, Zhang G, Gagneux S, Barry CE 3rd, Gao Q.

Genome Biol. 2017 Apr 19;18(1):71. doi: 10.1186/s13059-017-1196-0.

7.

Antimicrobial resistance in Mycobacterium tuberculosis: mechanistic and evolutionary perspectives.

Gygli SM, Borrell S, Trauner A, Gagneux S.

FEMS Microbiol Rev. 2017 May 1;41(3):354-373. doi: 10.1093/femsre/fux011. Review.

PMID:
28369307
8.

Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages.

Stucki D, Brites D, Jeljeli L, Coscolla M, Liu Q, Trauner A, Fenner L, Rutaihwa L, Borrell S, Luo T, Gao Q, Kato-Maeda M, Ballif M, Egger M, Macedo R, Mardassi H, Moreno M, Tudo Vilanova G, Fyfe J, Globan M, Thomas J, Jamieson F, Guthrie JL, Asante-Poku A, Yeboah-Manu D, Wampande E, Ssengooba W, Joloba M, Henry Boom W, Basu I, Bower J, Saraiva M, Vaconcellos SEG, Suffys P, Koch A, Wilkinson R, Gail-Bekker L, Malla B, Ley SD, Beck HP, de Jong BC, Toit K, Sanchez-Padilla E, Bonnet M, Gil-Brusola A, Frank M, Penlap Beng VN, Eisenach K, Alani I, Wangui Ndung'u P, Revathi G, Gehre F, Akter S, Ntoumi F, Stewart-Isherwood L, Ntinginya NE, Rachow A, Hoelscher M, Cirillo DM, Skenders G, Hoffner S, Bakonyte D, Stakenas P, Diel R, Crudu V, Moldovan O, Al-Hajoj S, Otero L, Barletta F, Jane Carter E, Diero L, Supply P, Comas I, Niemann S, Gagneux S.

Nat Genet. 2016 Dec;48(12):1535-1543. doi: 10.1038/ng.3704. Epub 2016 Oct 31.

9.

Acquired Resistance to Bedaquiline and Delamanid in Therapy for Tuberculosis.

Bloemberg GV, Keller PM, Stucki D, Trauner A, Borrell S, Latshang T, Coscolla M, Rothe T, Hömke R, Ritter C, Feldmann J, Schulthess B, Gagneux S, Böttger EC.

N Engl J Med. 2015 Nov 12;373(20):1986-8. doi: 10.1056/NEJMc1505196. Erratum in: N Engl J Med. 2015 Dec 17;373(25):e29. Stuckia, David [corrected to Stucki, David].

10.

Genetic Strategies for Identifying New Drug Targets.

Trauner A, Sassetti CM, Rubin EJ.

Microbiol Spectr. 2014 Aug;2(4):MGM2-0030-2013. doi: 10.1128/microbiolspec.MGM2-0030-2013. Review.

PMID:
26104208
11.

Evolution of drug resistance in tuberculosis: recent progress and implications for diagnosis and therapy.

Trauner A, Borrell S, Reither K, Gagneux S.

Drugs. 2014 Jul;74(10):1063-72. doi: 10.1007/s40265-014-0248-y. Review.

12.

Tryptophan biosynthesis protects mycobacteria from CD4 T-cell-mediated killing.

Zhang YJ, Reddy MC, Ioerger TR, Rothchild AC, Dartois V, Schuster BM, Trauner A, Wallis D, Galaviz S, Huttenhower C, Sacchettini JC, Behar SM, Rubin EJ.

Cell. 2013 Dec 5;155(6):1296-308. doi: 10.1016/j.cell.2013.10.045.

13.

The dormancy regulator DosR controls ribosome stability in hypoxic mycobacteria.

Trauner A, Lougheed KE, Bennett MH, Hingley-Wilson SM, Williams HD.

J Biol Chem. 2012 Jul 6;287(28):24053-63. doi: 10.1074/jbc.M112.364851. Epub 2012 Apr 27.

14.

Isolation of bacterial ribosomes with monolith chromatography.

Trauner A, Bennett MH, Williams HD.

PLoS One. 2011 Feb 4;6(2):e16273. doi: 10.1371/journal.pone.0016273.

15.

Exploitation of a new flagellatropic phage of Erwinia for positive selection of bacterial mutants attenuated in plant virulence: towards phage therapy.

Evans TJ, Trauner A, Komitopoulou E, Salmond GP.

J Appl Microbiol. 2010 Feb;108(2):676-85. doi: 10.1111/j.1365-2672.2009.04462.x. Epub 2009 Jul 7.

16.

Identification of AglE, a second glycosyltransferase involved in N glycosylation of the Haloferax volcanii S-layer glycoprotein.

Abu-Qarn M, Giordano A, Battaglia F, Trauner A, Hitchen PG, Morris HR, Dell A, Eichler J.

J Bacteriol. 2008 May;190(9):3140-6. doi: 10.1128/JB.00056-08. Epub 2008 Feb 29.

17.

Haloferax volcanii AglB and AglD are involved in N-glycosylation of the S-layer glycoprotein and proper assembly of the surface layer.

Abu-Qarn M, Yurist-Doutsch S, Giordano A, Trauner A, Morris HR, Hitchen P, Medalia O, Dell A, Eichler J.

J Mol Biol. 2007 Dec 14;374(5):1224-36. Epub 2007 Oct 22.

PMID:
17996897
18.

[Esophagomediastinal fistulae as a rare complication of tuberculosis in an HIV-infected patient].

Greten T, Hautmann H, Trauner A, Huber RM.

Dtsch Med Wochenschr. 1994 Nov 25;119(47):1613-7. Review. German.

PMID:
7982371
19.

A new immunoassay for soluble fibrin enables a more sensitive detection of the activation state of blood coagulation in vivo.

Lill H, Spannagl M, Trauner A, Schramm W, Schuller D, Ofenloch-Haehnle B, Draeger B, Naser W, Dessauer A.

Blood Coagul Fibrinolysis. 1993 Feb;4(1):97-102.

PMID:
8457660
20.

Sensitive detection of the activation state of blood coagulation in porcine DIC models by a new fibrin immunoassay.

Spannagl M, Trauner A, Birg A, Frank G, Hoffmann H, Siebeck M, Lill H.

Blood Coagul Fibrinolysis. 1993 Feb;4(1):103-6.

PMID:
8457635
21.

[Individual laboratory control of anticoagulant therapy].

Spannagl M, Lill H, Trauner A, Schramm W.

Vasa Suppl. 1992;35:115-6. German. No abstract available.

PMID:
1481011

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