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Items: 1 to 50 of 108

2.

Comparative genomic hybridization to detect variation in the copy number of large DNA segments.

Holcomb IN, Trask BJ.

Cold Spring Harb Protoc. 2011 Nov 1;2011(11):1323-33. doi: 10.1101/pdb.top066589.

PMID:
22046040
3.

Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content.

Hughes JF, Skaletsky H, Pyntikova T, Graves TA, van Daalen SK, Minx PJ, Fulton RS, McGrath SD, Locke DP, Friedman C, Trask BJ, Mardis ER, Warren WC, Repping S, Rozen S, Wilson RK, Page DC.

Nature. 2010 Jan 28;463(7280):536-9. doi: 10.1038/nature08700. Epub 2010 Jan 13.

4.

Extreme variability among mammalian V1R gene families.

Young JM, Massa HF, Hsu L, Trask BJ.

Genome Res. 2010 Jan;20(1):10-8. doi: 10.1101/gr.098913.109. Epub 2009 Dec 1.

5.

Comparative analyses of chromosome alterations in soft-tissue metastases within and across patients with castration-resistant prostate cancer.

Holcomb IN, Young JM, Coleman IM, Salari K, Grove DI, Hsu L, True LD, Roudier MP, Morrissey CM, Higano CS, Nelson PS, Vessella RL, Trask BJ.

Cancer Res. 2009 Oct 1;69(19):7793-802. doi: 10.1158/0008-5472.CAN-08-3810. Epub 2009 Sep 22.

6.

Tissue-specific variation in DNA methylation levels along human chromosome 1.

De Bustos C, Ramos E, Young JM, Tran RK, Menzel U, Langford CF, Eichler EE, Hsu L, Henikoff S, Dumanski JP, Trask BJ.

Epigenetics Chromatin. 2009 Jun 8;2(1):7. doi: 10.1186/1756-8935-2-7.

7.

Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event.

Rudd MK, Endicott RM, Friedman C, Walker M, Young JM, Osoegawa K; NISC Comparative Sequencing Program, de Jong PJ, Green ED, Trask BJ.

Genome Res. 2009 Jan;19(1):33-41. doi: 10.1101/gr.083170.108. Epub 2008 Oct 24.

8.

Extensive copy-number variation of the human olfactory receptor gene family.

Young JM, Endicott RM, Parghi SS, Walker M, Kidd JM, Trask BJ.

Am J Hum Genet. 2008 Aug;83(2):228-42. doi: 10.1016/j.ajhg.2008.07.005.

9.

Genomic alterations indicate tumor origin and varied metastatic potential of disseminated cells from prostate cancer patients.

Holcomb IN, Grove DI, Kinnunen M, Friedman CL, Gallaher IS, Morgan TM, Sather CL, Delrow JJ, Nelson PS, Lange PH, Ellis WJ, True LD, Young JM, Hsu L, Trask BJ, Vessella RL.

Cancer Res. 2008 Jul 15;68(14):5599-608. doi: 10.1158/0008-5472.CAN-08-0812.

10.

A sequence-based survey of the complex structural organization of tumor genomes.

Raphael BJ, Volik S, Yu P, Wu C, Huang G, Linardopoulou EV, Trask BJ, Waldman F, Costello J, Pienta KJ, Mills GB, Bajsarowicz K, Kobayashi Y, Sridharan S, Paris PL, Tao Q, Aerni SJ, Brown RP, Bashir A, Gray JW, Cheng JF, de Jong P, Nefedov M, Ried T, Padilla-Nash HM, Collins CC.

Genome Biol. 2008;9(3):R59. doi: 10.1186/gb-2008-9-3-r59. Epub 2008 Mar 25.

11.

Human subtelomeric WASH genes encode a new subclass of the WASP family.

Linardopoulou EV, Parghi SS, Friedman C, Osborn GE, Parkhurst SM, Trask BJ.

PLoS Genet. 2007 Dec;3(12):e237.

12.

V2R gene families degenerated in primates, dog and cow, but expanded in opossum.

Young JM, Trask BJ.

Trends Genet. 2007 May;23(5):212-5. Epub 2007 Mar 26.

PMID:
17382427
13.

Elevated rates of sister chromatid exchange at chromosome ends.

Rudd MK, Friedman C, Parghi SS, Linardopoulou EV, Hsu L, Trask BJ.

PLoS Genet. 2007 Feb 23;3(2):e32.

14.

Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication.

Linardopoulou EV, Williams EM, Fan Y, Friedman C, Young JM, Trask BJ.

Nature. 2005 Sep 1;437(7055):94-100.

15.

Interchromosomal segmental duplications explain the unusual structure of PRSS3, the gene for an inhibitor-resistant trypsinogen.

Rowen L, Williams E, Glusman G, Linardopoulou E, Friedman C, Ahearn ME, Seto J, Boysen C, Qin S, Wang K, Kaur A, Bloom S, Hood L, Trask BJ.

Mol Biol Evol. 2005 Aug;22(8):1712-20. Epub 2005 May 18.

PMID:
15901841
16.

Divergent V1R repertoires in five species: Amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs.

Young JM, Kambere M, Trask BJ, Lane RP.

Genome Res. 2005 Feb;15(2):231-40. Epub 2005 Jan 14. Erratum in: Genome Res. 2005 Apr;15(4):601.

17.

Array comparative genomic hybridization analysis of genomic alterations in breast cancer subtypes.

Loo LW, Grove DI, Williams EM, Neal CL, Cousens LA, Schubert EL, Holcomb IN, Massa HF, Glogovac J, Li CI, Malone KE, Daling JR, Delrow JJ, Trask BJ, Hsu L, Porter PL.

Cancer Res. 2004 Dec 1;64(23):8541-9.

18.

Species specificity in rodent pheromone receptor repertoires.

Lane RP, Young J, Newman T, Trask BJ.

Genome Res. 2004 Apr;14(4):603-8.

19.

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer S, Scott G, Steffen D, Worley KC, Burch PE, Okwuonu G, Hines S, Lewis L, DeRamo C, Delgado O, Dugan-Rocha S, Miner G, Morgan M, Hawes A, Gill R, Celera, Holt RA, Adams MD, Amanatides PG, Baden-Tillson H, Barnstead M, Chin S, Evans CA, Ferriera S, Fosler C, Glodek A, Gu Z, Jennings D, Kraft CL, Nguyen T, Pfannkoch CM, Sitter C, Sutton GG, Venter JC, Woodage T, Smith D, Lee HM, Gustafson E, Cahill P, Kana A, Doucette-Stamm L, Weinstock K, Fechtel K, Weiss RB, Dunn DM, Green ED, Blakesley RW, Bouffard GG, De Jong PJ, Osoegawa K, Zhu B, Marra M, Schein J, Bosdet I, Fjell C, Jones S, Krzywinski M, Mathewson C, Siddiqui A, Wye N, McPherson J, Zhao S, Fraser CM, Shetty J, Shatsman S, Geer K, Chen Y, Abramzon S, Nierman WC, Havlak PH, Chen R, Durbin KJ, Egan A, Ren Y, Song XZ, Li B, Liu Y, Qin X, Cawley S, Worley KC, Cooney AJ, D'Souza LM, Martin K, Wu JQ, Gonzalez-Garay ML, Jackson AR, Kalafus KJ, McLeod MP, Milosavljevic A, Virk D, Volkov A, Wheeler DA, Zhang Z, Bailey JA, Eichler EE, Tuzun E, Birney E, Mongin E, Ureta-Vidal A, Woodwark C, Zdobnov E, Bork P, Suyama M, Torrents D, Alexandersson M, Trask BJ, Young JM, Huang H, Wang H, Xing H, Daniels S, Gietzen D, Schmidt J, Stevens K, Vitt U, Wingrove J, Camara F, Mar Albà M, Abril JF, Guigo R, Smit A, Dubchak I, Rubin EM, Couronne O, Poliakov A, Hübner N, Ganten D, Goesele C, Hummel O, Kreitler T, Lee YA, Monti J, Schulz H, Zimdahl H, Himmelbauer H, Lehrach H, Jacob HJ, Bromberg S, Gullings-Handley J, Jensen-Seaman MI, Kwitek AE, Lazar J, Pasko D, Tonellato PJ, Twigger S, Ponting CP, Duarte JM, Rice S, Goodstadt L, Beatson SA, Emes RD, Winter EE, Webber C, Brandt P, Nyakatura G, Adetobi M, Chiaromonte F, Elnitski L, Eswara P, Hardison RC, Hou M, Kolbe D, Makova K, Miller W, Nekrutenko A, Riemer C, Schwartz S, Taylor J, Yang S, Zhang Y, Lindpaintner K, Andrews TD, Caccamo M, Clamp M, Clarke L, Curwen V, Durbin R, Eyras E, Searle SM, Cooper GM, Batzoglou S, Brudno M, Sidow A, Stone EA, Venter JC, Payseur BA, Bourque G, López-Otín C, Puente XS, Chakrabarti K, Chatterji S, Dewey C, Pachter L, Bray N, Yap VB, Caspi A, Tesler G, Pevzner PA, Haussler D, Roskin KM, Baertsch R, Clawson H, Furey TS, Hinrichs AS, Karolchik D, Kent WJ, Rosenbloom KR, Trumbower H, Weirauch M, Cooper DN, Stenson PD, Ma B, Brent M, Arumugam M, Shteynberg D, Copley RR, Taylor MS, Riethman H, Mudunuri U, Peterson J, Guyer M, Felsenfeld A, Old S, Mockrin S, Collins F; Rat Genome Sequencing Project Consortium.

Nature. 2004 Apr 1;428(6982):493-521.

PMID:
15057822
20.

Odorant receptor expressed sequence tags demonstrate olfactory expression of over 400 genes, extensive alternate splicing and unequal expression levels.

Young JM, Shykind BM, Lane RP, Tonnes-Priddy L, Ross JA, Walker M, Williams EM, Trask BJ.

Genome Biol. 2003;4(11):R71. Epub 2003 Oct 7.

21.

Complex evolution of 7E olfactory receptor genes in segmental duplications.

Newman T, Trask BJ.

Genome Res. 2003 May;13(5):781-93. Erratum in: Genome Res. 2006 Apr;16(4):557.

22.
23.
24.

Human cytogenetics: 46 chromosomes, 46 years and counting.

Trask BJ.

Nat Rev Genet. 2002 Oct;3(10):769-78. doi: 10.1038/nrg905. Review.

PMID:
12360235
25.

Identification of a novel gene on chromosome 7q11.2 interrupted by a translocation breakpoint in a pair of autistic twins.

Sultana R, Yu CE, Yu J, Munson J, Chen D, Hua W, Estes A, Cortes F, de la Barra F, Yu D, Haider ST, Trask BJ, Green ED, Raskind WH, Disteche CM, Wijsman E, Dawson G, Storm DR, Schellenberg GD, Villacres EC.

Genomics. 2002 Aug;80(2):129-34.

PMID:
12160723
26.

Use of fluorescent sequence-specific polyamides to discriminate human chromosomes by microscopy and flow cytometry.

Gygi MP, Ferguson MD, Mefford HC, Lund KP, O'Day C, Zhou P, Friedman C, van den Engh G, Stolowitz ML, Trask BJ.

Nucleic Acids Res. 2002 Jul 1;30(13):2790-9.

27.

Short inverted repeats initiate gene amplification through the formation of a large DNA palindrome in mammalian cells.

Tanaka H, Tapscott SJ, Trask BJ, Yao MC.

Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8772-7. Epub 2002 Jun 11.

28.

The sense of smell: genomics of vertebrate odorant receptors.

Young JM, Trask BJ.

Hum Mol Genet. 2002 May 15;11(10):1153-60. Review.

PMID:
12015274
29.

Different evolutionary processes shaped the mouse and human olfactory receptor gene families.

Young JM, Friedman C, Williams EM, Ross JA, Tonnes-Priddy L, Trask BJ.

Hum Mol Genet. 2002 Mar 1;11(5):535-46. Erratum in: Hum Mol Genet. 2002 Jul 1;11(14):1683..

PMID:
11875048
30.

The complex structure and dynamic evolution of human subtelomeres.

Mefford HC, Trask BJ.

Nat Rev Genet. 2002 Feb;3(2):91-102. Review. Erratum in: Nat Rev Genet 2002 Mar;3(3):229.

PMID:
11836503
31.

Genomic analysis of the olfactory receptor region of the mouse and human T-cell receptor alpha/delta loci.

Lane RP, Roach JC, Lee IY, Boysen C, Smit A, Trask BJ, Hood L.

Genome Res. 2002 Jan;12(1):81-7.

32.

Sequence analysis of mouse vomeronasal receptor gene clusters reveals common promoter motifs and a history of recent expansion.

Lane RP, Cutforth T, Axel R, Hood L, Trask BJ.

Proc Natl Acad Sci U S A. 2002 Jan 8;99(1):291-6. Epub 2001 Dec 18.

33.

Transcriptional activity of multiple copies of a subtelomerically located olfactory receptor gene that is polymorphic in number and location.

Linardopoulou E, Mefford HC, Nguyen O, Friedman C, van den Engh G, Farwell DG, Coltrera M, Trask BJ.

Hum Mol Genet. 2001 Oct 1;10(21):2373-83.

PMID:
11689484
34.

Comparative sequencing of a multicopy subtelomeric region containing olfactory receptor genes reveals multiple interactions between non-homologous chromosomes.

Mefford HC, Linardopoulou E, Coil D, van den Engh G, Trask BJ.

Hum Mol Genet. 2001 Oct 1;10(21):2363-72.

PMID:
11689483
35.

Genomic analysis of orthologous mouse and human olfactory receptor loci.

Lane RP, Cutforth T, Young J, Athanasiou M, Friedman C, Rowen L, Evans G, Axel R, Hood L, Trask BJ.

Proc Natl Acad Sci U S A. 2001 Jun 19;98(13):7390-5.

36.

Segmental duplications: organization and impact within the current human genome project assembly.

Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE.

Genome Res. 2001 Jun;11(6):1005-17.

37.

Integration of cytogenetic landmarks into the draft sequence of the human genome.

Cheung VG, Nowak N, Jang W, Kirsch IR, Zhao S, Chen XN, Furey TS, Kim UJ, Kuo WL, Olivier M, Conroy J, Kasprzyk A, Massa H, Yonescu R, Sait S, Thoreen C, Snijders A, Lemyre E, Bailey JA, Bruzel A, Burrill WD, Clegg SM, Collins S, Dhami P, Friedman C, Han CS, Herrick S, Lee J, Ligon AH, Lowry S, Morley M, Narasimhan S, Osoegawa K, Peng Z, Plajzer-Frick I, Quade BJ, Scott D, Sirotkin K, Thorpe AA, Gray JW, Hudson J, Pinkel D, Ried T, Rowen L, Shen-Ong GL, Strausberg RL, Birney E, Callen DF, Cheng JF, Cox DR, Doggett NA, Carter NP, Eichler EE, Haussler D, Korenberg JR, Morton CC, Albertson D, Schuler G, de Jong PJ, Trask BJ; BAC Resource Consortium.

Nature. 2001 Feb 15;409(6822):953-8.

PMID:
11237021
38.

A high-resolution radiation hybrid map of the human genome draft sequence.

Olivier M, Aggarwal A, Allen J, Almendras AA, Bajorek ES, Beasley EM, Brady SD, Bushard JM, Bustos VI, Chu A, Chung TR, De Witte A, Denys ME, Dominguez R, Fang NY, Foster BD, Freudenberg RW, Hadley D, Hamilton LR, Jeffrey TJ, Kelly L, Lazzeroni L, Levy MR, Lewis SC, Liu X, Lopez FJ, Louie B, Marquis JP, Martinez RA, Matsuura MK, Misherghi NS, Norton JA, Olshen A, Perkins SM, Perou AJ, Piercy C, Piercy M, Qin F, Reif T, Sheppard K, Shokoohi V, Smick GA, Sun WL, Stewart EA, Fernando J, Tejeda, Tran NM, Trejo T, Vo NT, Yan SC, Zierten DL, Zhao S, Sachidanandam R, Trask BJ, Myers RM, Cox DR.

Science. 2001 Feb 16;291(5507):1298-302.

39.

Characterization of nonfunctional V1R-like pheromone receptor sequences in human.

Giorgi D, Friedman C, Trask BJ, Rouquier S.

Genome Res. 2000 Dec;10(12):1979-85.

40.

Amplification of the human dihydrofolate reductase gene via double minutes is initiated by chromosome breaks.

Singer MJ, Mesner LD, Friedman CL, Trask BJ, Hamlin JL.

Proc Natl Acad Sci U S A. 2000 Jul 5;97(14):7921-6.

41.

Radiation-produced chromosome aberrations: colourful clues.

Sachs RK, Hlatky LR, Trask BJ.

Trends Genet. 2000 Apr;16(4):143-6. Review.

PMID:
10729825
42.

Characterization, chromosomal localization, and the complete 30-kb DNA sequence of the human Jagged2 (JAG2) gene.

Deng Y, Madan A, Banta AB, Friedman C, Trask BJ, Hood L, Li L.

Genomics. 2000 Jan 1;63(1):133-8.

PMID:
10662552
43.

Identification, characterization, and mapping of a mouse homolog of the gene mutated in Nijmegen breakage syndrome.

Vissinga CS, Yeo TC, Woessner J, Massa HF, Wilson RK, Trask BJ, Concannon P.

Cytogenet Cell Genet. 1999;87(1-2):80-4.

PMID:
10640816
44.

Sharp DNA bends as landmarks of protein-binding sites on straightened DNA.

Yokota H, Fung K, Trask BJ, van den Engh G, Sarikaya M, Aebersold R.

Anal Chem. 1999 May 1;71(9):1663-7.

PMID:
10330902
45.

Comparative mapping of the region of human chromosome 7 deleted in williams syndrome.

DeSilva U, Massa H, Trask BJ, Green ED.

Genome Res. 1999 May;9(5):428-36.

46.

A genomic region encompassing a cluster of olfactory receptor genes and a myosin light chain kinase (MYLK) gene is duplicated on human chromosome regions 3q13-q21 and 3p13.

Brand-Arpon V, Rouquier S, Massa H, de Jong PJ, Ferraz C, Ioannou PA, Demaille JG, Trask BJ, Giorgi D.

Genomics. 1999 Feb 15;56(1):98-110.

PMID:
10036190
47.

An 18q- syndrome breakpoint resides between the duplicated serpins SCCA1 and SCCA2 and arises via a cryptic rearrangement with satellite III DNA.

Katz SG, Schneider SS, Bartuski A, Trask BJ, Massa H, Overhauser J, Lalande M, Lansdorp PM, Silverman GA.

Hum Mol Genet. 1999 Jan;8(1):87-92.

PMID:
9887335
48.

Mapping a protein-binding site on straightened DNA by atomic force microscopy.

Yokota H, Nickerson DA, Trask BJ, van den Engh G, Hirst M, Sadowski I, Aebersold R.

Anal Biochem. 1998 Nov 15;264(2):158-64.

PMID:
9866677
49.

Complete physical map of the common deletion region in Williams syndrome and identification and characterization of three novel genes.

Meng X, Lu X, Li Z, Green ED, Massa H, Trask BJ, Morris CA, Keating MT.

Hum Genet. 1998 Nov;103(5):590-9.

PMID:
9860302
50.

A murine ortholog of the human serpin SCCA2 maps to chromosome 1 and inhibits chymotrypsin-like serine proteinases.

Bartuski AJ, Kamachi Y, Schick C, Massa H, Trask BJ, Silverman GA.

Genomics. 1998 Dec 1;54(2):297-306.

PMID:
9828132

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