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Items: 13

1.

Where did you come from, where did you go: Refining metagenomic analysis tools for horizontal gene transfer characterisation.

Seiler E, Trappe K, Renard BY.

PLoS Comput Biol. 2019 Jul 23;15(7):e1007208. doi: 10.1371/journal.pcbi.1007208. eCollection 2019 Jul.

2.

Systems-level Analysis Reveals Multiple Modulators of Epithelial-mesenchymal Transition and Identifies DNAJB4 and CD81 as Novel Metastasis Inducers in Breast Cancer.

Uretmen Kagiali ZC, Sanal E, Karayel Ö, Polat AN, Saatci Ö, Ersan PG, Trappe K, Renard BY, Önder TT, Tuncbag N, Şahin Ö, Ozlu N.

Mol Cell Proteomics. 2019 Sep;18(9):1756-1771. doi: 10.1074/mcp.RA119.001446. Epub 2019 Jun 20.

PMID:
31221721
3.

Detecting horizontal gene transfer by mapping sequencing reads across species boundaries.

Trappe K, Marschall T, Renard BY.

Bioinformatics. 2016 Sep 1;32(17):i595-i604. doi: 10.1093/bioinformatics/btw423.

PMID:
27587679
4.

Gustaf: Detecting and correctly classifying SVs in the NGS twilight zone.

Trappe K, Emde AK, Ehrlich HC, Reinert K.

Bioinformatics. 2014 Dec 15;30(24):3484-90. doi: 10.1093/bioinformatics/btu431. Epub 2014 Jul 14.

PMID:
25028727
5.

Genome alignment with graph data structures: a comparison.

Kehr B, Trappe K, Holtgrewe M, Reinert K.

BMC Bioinformatics. 2014 Apr 9;15:99. doi: 10.1186/1471-2105-15-99.

6.

Genetic suppression of Gαs protein provides rate control in atrial fibrillation.

Lugenbiel P, Thomas D, Kelemen K, Trappe K, Bikou O, Schweizer PA, Voss F, Becker R, Katus HA, Bauer A.

Basic Res Cardiol. 2012 May;107(3):265. doi: 10.1007/s00395-012-0265-5. Epub 2012 Mar 29.

PMID:
22457123
7.

[Is the determination of the defibrillation threshold in patients with an implantable cardioverter-defibrillator still required?].

Licka M, Jahn L, Kelemen K, Voss F, Trappe K, Becker R, Bikou O, Hauck M, Koch M, Katus HA, Bauer A.

Herzschrittmacherther Elektrophysiol. 2011 Dec;22(4):209-13. doi: 10.1007/s00399-011-0150-1. Epub 2011 Nov 13. German.

PMID:
22080419
8.

Connexin 43 gene therapy prevents persistent atrial fibrillation in a porcine model.

Bikou O, Thomas D, Trappe K, Lugenbiel P, Kelemen K, Koch M, Soucek R, Voss F, Becker R, Katus HA, Bauer A.

Cardiovasc Res. 2011 Nov 1;92(2):218-25. doi: 10.1093/cvr/cvr209. Epub 2011 Jul 28.

PMID:
21799069
9.

Suppression of persistent atrial fibrillation by genetic knockdown of caspase 3: a pre-clinical pilot study.

Trappe K, Thomas D, Bikou O, Kelemen K, Lugenbiel P, Voss F, Becker R, Katus HA, Bauer A.

Eur Heart J. 2013 Jan;34(2):147-57. doi: 10.1093/eurheartj/ehr269. Epub 2011 Jul 23.

PMID:
21785105
10.

Vaginal-perianal compared with vaginal-rectal cultures for detecting group B streptococci during pregnancy.

Trappe KL, Shaffer LE, Stempel LE.

Obstet Gynecol. 2011 Aug;118(2 Pt 1):313-7. doi: 10.1097/AOG.0b013e318225383b.

PMID:
21775847
11.

Carvedilol targets human K2P 3.1 (TASK1) K+ leak channels.

Staudacher K, Staudacher I, Ficker E, Seyler C, Gierten J, Kisselbach J, Rahm AK, Trappe K, Schweizer PA, Becker R, Katus HA, Thomas D.

Br J Pharmacol. 2011 Jul;163(5):1099-110. doi: 10.1111/j.1476-5381.2011.01319.x.

12.

Somatic mutation profiles of MSI and MSS colorectal cancer identified by whole exome next generation sequencing and bioinformatics analysis.

Timmermann B, Kerick M, Roehr C, Fischer A, Isau M, Boerno ST, Wunderlich A, Barmeyer C, Seemann P, Koenig J, Lappe M, Kuss AW, Garshasbi M, Bertram L, Trappe K, Werber M, Herrmann BG, Zatloukal K, Lehrach H, Schweiger MR.

PLoS One. 2010 Dec 22;5(12):e15661. doi: 10.1371/journal.pone.0015661.

13.

Association of VSNL1 with schizophrenia, frontal cortical function, and biological significance for its gene product as a modulator of cAMP levels and neuronal morphology.

Braunewell KH, Dwary AD, Richter F, Trappe K, Zhao C, Giegling I, Schönrath K, Rujescu D.

Transl Psychiatry. 2011 Jul 19;1:e22. doi: 10.1038/tp.2011.20.

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