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Items: 16

1.

MooSciTIC: Training of trainers in West African research and higher education.

Atindehou M, Adéoti K, Loko LEY, Beulé T, Paradis E, Djedatin G, Tranchant-Dubreuil C, Sabot F, Lagnika L, Jaligot E.

PLoS Biol. 2019 Jun 7;17(6):e3000312. doi: 10.1371/journal.pbio.3000312. [Epub ahead of print]

2.

Development and evaluation of a genome-wide Coffee 8.5K SNP array and its application for high-density genetic mapping and for investigating the origin of Coffea arabica L.

Merot-L'anthoene V, Tournebize R, Darracq O, Rattina V, Lepelley M, Bellanger L, Tranchant-Dubreuil C, Coulée M, Pégard M, Metairon S, Fournier C, Stoffelen P, Janssens SB, Kiwuka C, Musoli P, Sumirat U, Legnaté H, Kambale JL, Ferreira da Costa Neto J, Revel C, de Kochko A, Descombes P, Crouzillat D, Poncet V.

Plant Biotechnol J. 2018 Dec 24. doi: 10.1111/pbi.13066. [Epub ahead of print]

3.

The Rise and Fall of African Rice Cultivation Revealed by Analysis of 246 New Genomes.

Cubry P, Tranchant-Dubreuil C, Thuillet AC, Monat C, Ndjiondjop MN, Labadie K, Cruaud C, Engelen S, Scarcelli N, Rhoné B, Burgarella C, Dupuy C, Larmande P, Wincker P, François O, Sabot F, Vigouroux Y.

Curr Biol. 2018 Jul 23;28(14):2274-2282.e6. doi: 10.1016/j.cub.2018.05.066. Epub 2018 Jul 5.

PMID:
29983312
4.

De Novo Assemblies of Three Oryza glaberrima Accessions Provide First Insights about Pan-Genome of African Rices.

Monat C, Pera B, Ndjiondjop MN, Sow M, Tranchant-Dubreuil C, Bastianelli L, Ghesquière A, Sabot F.

Genome Biol Evol. 2017 Jan 1;9(1):1-6. doi: 10.1093/gbe/evw253.

5.

LTRclassifier: A website for fast structural LTR retrotransposons classification in plants.

Monat C, Tando N, Tranchant-Dubreuil C, Sabot F.

Mob Genet Elements. 2016 Sep 26;6(6):e1241050. doi: 10.1080/2159256X.2016.1241050. eCollection 2016.

6.

TOGGLE: toolbox for generic NGS analyses.

Monat C, Tranchant-Dubreuil C, Kougbeadjo A, Farcy C, Ortega-Abboud E, Amanzougarene S, Ravel S, Agbessi M, Orjuela-Bouniol J, Summo M, Sabot F.

BMC Bioinformatics. 2015 Nov 9;16:374. doi: 10.1186/s12859-015-0795-6.

7.

The coffee genome hub: a resource for coffee genomes.

Dereeper A, Bocs S, Rouard M, Guignon V, Ravel S, Tranchant-Dubreuil C, Poncet V, Garsmeur O, Lashermes P, Droc G.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1028-35. doi: 10.1093/nar/gku1108. Epub 2014 Nov 11.

8.

In silico mining of microsatellites in coding sequences of the date palm (Arecaceae) genome, characterization, and transferability.

Aberlenc-Bertossi F, Castillo K, Tranchant-Dubreuil C, Chérif E, Ballardini M, Abdoulkader S, Gros-Balthazard M, Chabrillange N, Santoni S, Mercuri A, Pintaud JC.

Appl Plant Sci. 2014 Jan 7;2(1). pii: apps.1300058. doi: 10.3732/apps.1300058. eCollection 2014 Jan.

9.

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis.

Denoeud F, Carretero-Paulet L, Dereeper A, Droc G, Guyot R, Pietrella M, Zheng C, Alberti A, Anthony F, Aprea G, Aury JM, Bento P, Bernard M, Bocs S, Campa C, Cenci A, Combes MC, Crouzillat D, Da Silva C, Daddiego L, De Bellis F, Dussert S, Garsmeur O, Gayraud T, Guignon V, Jahn K, Jamilloux V, Joët T, Labadie K, Lan T, Leclercq J, Lepelley M, Leroy T, Li LT, Librado P, Lopez L, Muñoz A, Noel B, Pallavicini A, Perrotta G, Poncet V, Pot D, Priyono, Rigoreau M, Rouard M, Rozas J, Tranchant-Dubreuil C, VanBuren R, Zhang Q, Andrade AC, Argout X, Bertrand B, de Kochko A, Graziosi G, Henry RJ, Jayarama, Ming R, Nagai C, Rounsley S, Sankoff D, Giuliano G, Albert VA, Wincker P, Lashermes P.

Science. 2014 Sep 5;345(6201):1181-4. doi: 10.1126/science.1255274. Epub 2014 Sep 4.

10.

Phylogeography and niche modelling of the relict plant Amborella trichopoda (Amborellaceae) reveal multiple Pleistocene refugia in New Caledonia.

Poncet V, Munoz F, Munzinger J, Pillon Y, Gomez C, Couderc M, Tranchant-Dubreuil C, Hamon S, de Kochko A.

Mol Ecol. 2013 Dec;22(24):6163-78. doi: 10.1111/mec.12554. Epub 2013 Nov 11.

PMID:
24118476
11.

BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution.

Dereeper A, Guyot R, Tranchant-Dubreuil C, Anthony F, Argout X, de Bellis F, Combes MC, Gavory F, de Kochko A, Kudrna D, Leroy T, Poulain J, Rondeau M, Song X, Wing R, Lashermes P.

Plant Mol Biol. 2013 Oct;83(3):177-89. doi: 10.1007/s11103-013-0077-5. Epub 2013 May 25.

PMID:
23708951
12.

Microsatellite markers for Amborella (Amborellaceae), a monotypic genus endemic to New Caledonia.

Poncet V, Couderc M, Tranchant-Dubreuil C, Gomez C, Hamon P, Hamon S, Pillon Y, Munzinger J, de Kochko A.

Am J Bot. 2012 Oct;99(10):e411-4. doi: 10.3732/ajb.1200131. Epub 2012 Oct 1.

13.

Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.

Guyot R, Lefebvre-Pautigny F, Tranchant-Dubreuil C, Rigoreau M, Hamon P, Leroy T, Hamon S, Poncet V, Crouzillat D, de Kochko A.

BMC Genomics. 2012 Mar 20;13:103. doi: 10.1186/1471-2164-13-103.

14.

MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, De Block P, Hamon P, Campa C, de Kochko A, Hamon S, Poncet V.

BMC Plant Biol. 2009 Sep 29;9:123. doi: 10.1186/1471-2229-9-123.

15.

Transcriptome analysis during somatic embryogenesis of the tropical monocot Elaeis guineensis: evidence for conserved gene functions in early development.

Lin HC, Morcillo F, Dussert S, Tranchant-Dubreuil C, Tregear JW, Tranbarger TJ.

Plant Mol Biol. 2009 May;70(1-2):173-92. doi: 10.1007/s11103-009-9464-3. Epub 2009 Feb 7.

PMID:
19199047
16.

Rice yellow mottle virus stress responsive genes from susceptible and tolerant rice genotypes.

Ventelon-Debout M, Tranchant-Dubreuil C, Nguyen TT, Bangratz M, Siré C, Delseny M, Brugidou C.

BMC Plant Biol. 2008 Mar 3;8:26. doi: 10.1186/1471-2229-8-26.

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