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Items: 21

1.

Kelpie: generating full-length 'amplicons' from whole-metagenome datasets.

Greenfield P, Tran-Dinh N, Midgley D.

PeerJ. 2019 Jan 30;6:e6174. doi: 10.7717/peerj.6174. eCollection 2019.

2.

Gamarada debralockiae gen. nov. sp. nov.-the genome of the most widespread Australian ericoid mycorrhizal fungus.

Midgley DJ, Sutcliffe B, Greenfield P, Tran-Dinh N.

Mycorrhiza. 2018 May;28(4):379-389. doi: 10.1007/s00572-018-0835-y. Epub 2018 Apr 27.

PMID:
29700603
3.

First evidence of Pezoloma ericae in Australia: using the Biomes of Australia Soil Environments (BASE) to explore the Australian phylogeography of known ericoid mycorrhizal and root-associated fungi.

Midgley DJ, Greenfield P, Bissett A, Tran-Dinh N.

Mycorrhiza. 2017 Aug;27(6):587-594. doi: 10.1007/s00572-017-0769-9. Epub 2017 Mar 17.

PMID:
28315064
4.

Genomic insights into the carbohydrate catabolism of Cairneyella variabilis gen. nov. sp. nov., the first reports from a genome of an ericoid mycorrhizal fungus from the southern hemisphere.

Midgley DJ, Rosewarne CP, Greenfield P, Li D, Vockler CJ, Hitchcock CJ, Sawyer NA, Brett R, Edwards J, Pitt JI, Tran-Dinh N.

Mycorrhiza. 2016 May;26(4):345-52. doi: 10.1007/s00572-016-0683-6. Epub 2016 Feb 9.

PMID:
26861481
5.

Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences.

Deshpande V, Wang Q, Greenfield P, Charleston M, Porras-Alfaro A, Kuske CR, Cole JR, Midgley DJ, Tran-Dinh N.

Mycologia. 2016 Jan-Feb;108(1):1-5. doi: 10.3852/14-293. Epub 2015 Nov 9.

PMID:
26553774
6.

Draft Genome Sequence of Ruminoclostridium sp. Ne3, Clostridia from an Enrichment Culture Obtained from Australian Subterranean Termite, Nasutitermes exitiosus.

Wang H, Lin H, Tran-Dinh N, Li D, Greenfield P, Midgley DJ.

Genome Announc. 2015 Apr 23;3(2). pii: e00305-15. doi: 10.1128/genomeA.00305-15.

7.

Draft Genome Sequence of Clostridium sp. Ne2, Clostridia from an Enrichment Culture Obtained from Australian Subterranean Termite, Nasutitermes exitiosus.

Wang H, Lin H, Tran-Dinh N, Li D, Greenfield P, Midgley DJ.

Genome Announc. 2015 Apr 23;3(2). pii: e00304-15. doi: 10.1128/genomeA.00304-15.

8.

Draft Genome Sequence of Clostridium beijerinckii Ne1, Clostridia from an Enrichment Culture Obtained from Australian Subterranean Termite, Nasutitermes exitiosus.

Wang H, Lin H, Tran-Dinh N, Li D, Greenfield P, Midgley DJ.

Genome Announc. 2015 Apr 23;3(2). pii: e00303-15. doi: 10.1128/genomeA.00303-15.

9.

Genomic and chemical insights into biosurfactant production by the mangrove-derived strain Bacillus safensis CCMA-560.

Domingos DF, de Faria AF, de Souza Galaverna R, Eberlin MN, Greenfield P, Zucchi TD, Melo IS, Tran-Dinh N, Midgley D, de Oliveira VM.

Appl Microbiol Biotechnol. 2015 Apr;99(7):3155-67. doi: 10.1007/s00253-015-6377-8. Epub 2015 Jan 15.

PMID:
25586584
10.

Multilocus variable-number tandem-repeat analysis of clinical isolates of Aspergillus flavus from Iran reveals the first cases of Aspergillus minisclerotigenes associated with human infection.

Dehghan P, Bui T, Campbell LT, Lai YW, Tran-Dinh N, Zaini F, Carter DA.

BMC Infect Dis. 2014 Jul 1;14:358. doi: 10.1186/1471-2334-14-358.

11.

Draft Genome Sequence of Bacillus pumilus Fairview, an Isolate Recovered from a Microbial Methanogenic Enrichment of Coal Seam Gas Formation Water from Queensland, Australia.

Vockler CJ, Greenfield P, Tran-Dinh N, Midgley DJ.

Genome Announc. 2014 Apr 17;2(2). pii: e00279-14. doi: 10.1128/genomeA.00279-14.

12.

Draft Genome Sequence of Clostridium sp. Maddingley, Isolated from Coal-Seam Gas Formation Water.

Rosewarne CP, Greenfield P, Li D, Tran-Dinh N, Bradbury MI, Midgley DJ, Hendry P.

Genome Announc. 2013 Jan;1(1). pii: e00081-12. doi: 10.1128/genomeA.00081-12. Epub 2013 Jan 24.

13.

Draft Genome Sequence of Methanobacterium sp. Maddingley, Reconstructed from Metagenomic Sequencing of a Methanogenic Microbial Consortium Enriched from Coal-Seam Gas Formation Water.

Rosewarne CP, Greenfield P, Li D, Tran-Dinh N, Midgley DJ, Hendry P.

Genome Announc. 2013 Jan;1(1). pii: e00082-12. doi: 10.1128/genomeA.00082-12. Epub 2013 Jan 24.

14.
15.

Draft genome sequence of Clostridium sporogenes PA 3679, the common nontoxigenic surrogate for proteolytic Clostridium botulinum.

Bradbury M, Greenfield P, Midgley D, Li D, Tran-Dinh N, Vriesekoop F, Brown JL.

J Bacteriol. 2012 Mar;194(6):1631-2. doi: 10.1128/JB.06765-11.

16.

Survey of Vietnamese peanuts, corn and soil for the presence of Aspergillus flavus and Aspergillus parasiticus.

Tran-Dinh N, Kennedy I, Bui T, Carter D.

Mycopathologia. 2009 Nov;168(5):257-68. doi: 10.1007/s11046-009-9221-9. Epub 2009 Aug 20.

PMID:
19693687
17.

Utility of microsatellite markers and amplified fragment length polymorphism in the study of potentially ochratoxigenic black aspergilli.

Esteban A, Leong SL, Hocking AD, Abarca ML, CabaƱes FJ, Tran-Dinh N.

Curr Microbiol. 2008 Oct;57(4):348-55. doi: 10.1007/s00284-008-9201-1. Epub 2008 Jul 31.

PMID:
18668289
18.

Survey of Vietnamese coffee beans for the presence of ochratoxigenic Aspergilli.

Ilic Z, Bui T, Tran-Dinh N, Dang MH, Kennedy I, Carter D.

Mycopathologia. 2007 Mar;163(3):177-82. Epub 2007 Mar 15.

PMID:
17364217
19.

Xanthones from a microfungus of the genus Xylaria.

Healy PC, Hocking A, Tran-Dinh N, Pitt JI, Shivas RG, Mitchell JK, Kotiw M, Davis RA.

Phytochemistry. 2004 Aug;65(16):2373-8.

PMID:
15381010
20.

Complete genomic sequence of SfV, a serotype-converting temperate bacteriophage of Shigella flexneri.

Allison GE, Angeles D, Tran-Dinh N, Verma NK.

J Bacteriol. 2002 Apr;184(7):1974-87.

21.

Characterization of microsatellite loci in the aflatoxigenic fungi Aspergillus flavus and Aspergillus parasiticus.

Tran-Dinh N, Carter D.

Mol Ecol. 2000 Dec;9(12):2170-2. No abstract available.

PMID:
11123637

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