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Items: 1 to 50 of 344

1.

Clinical utility of the normal database of 123I-iodoamphetamine brain perfusion single photon emission computed tomography for statistical analysis using computed tomography-based attenuation correction: a multicenter study.

Yamazaki T, Inui Y, Ichihara T, Uno M, Ota S, Toyoda A, Ishiguro M, Kato T, Ito K, Toyama H.

Ann Nucl Med. 2019 Aug 14. doi: 10.1007/s12149-019-01395-0. [Epub ahead of print]

PMID:
31414335
2.

Evidence for sympatric speciation in a Wallacean ancient lake.

Sutra N, Kusumi J, Montenegro J, Kobayashi H, Fujimoto S, Masengi KWA, Nagano AJ, Toyoda A, Matsunami M, Kimura R, Yamahira K.

Evolution. 2019 Aug 13. doi: 10.1111/evo.13821. [Epub ahead of print]

PMID:
31407798
3.

Seasonal Stability and Dynamics of DNA Methylation in Plants in a Natural Environment.

Ito T, Nishio H, Tarutani Y, Emura N, Honjo MN, Toyoda A, Fujiyama A, Kakutani T, Kudoh H.

Genes (Basel). 2019 Jul 17;10(7). pii: E544. doi: 10.3390/genes10070544.

4.

Blastochloris tepida, sp. nov., a thermophilic species of the bacteriochlorophyll b-containing genus Blastochloris.

Madigan MT, Resnick SM, Kempher ML, Dohnalkova AC, Takaichi S, Wang-Otomo ZY, Toyoda A, Kurokawa K, Mori H, Tsukatani Y.

Arch Microbiol. 2019 Jul 17. doi: 10.1007/s00203-019-01701-4. [Epub ahead of print]

PMID:
31317227
5.

Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing.

Kazama T, Okuno M, Watari Y, Yanase S, Koizuka C, Tsuruta Y, Sugaya H, Toyoda A, Itoh T, Tsutsumi N, Toriyama K, Koizuka N, Arimura SI.

Nat Plants. 2019 Jul;5(7):722-730. doi: 10.1038/s41477-019-0459-z. Epub 2019 Jul 8.

PMID:
31285556
6.

De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication.

Chen Z, Omori Y, Koren S, Shirokiya T, Kuroda T, Miyamoto A, Wada H, Fujiyama A, Toyoda A, Zhang S, Wolfsberg TG, Kawakami K, Phillippy AM; NISC Comparative Sequencing Program, Mullikin JC, Burgess SM.

Sci Adv. 2019 Jun 26;5(6):eaav0547. doi: 10.1126/sciadv.aav0547. eCollection 2019 Jun.

7.

Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer.

Yachida S, Mizutani S, Shiroma H, Shiba S, Nakajima T, Sakamoto T, Watanabe H, Masuda K, Nishimoto Y, Kubo M, Hosoda F, Rokutan H, Matsumoto M, Takamaru H, Yamada M, Matsuda T, Iwasaki M, Yamaji T, Yachida T, Soga T, Kurokawa K, Toyoda A, Ogura Y, Hayashi T, Hatakeyama M, Nakagama H, Saito Y, Fukuda S, Shibata T, Yamada T.

Nat Med. 2019 Jun;25(6):968-976. doi: 10.1038/s41591-019-0458-7. Epub 2019 Jun 6.

PMID:
31171880
8.

A key metabolic gene for recurrent freshwater colonization and radiation in fishes.

Ishikawa A, Kabeya N, Ikeya K, Kakioka R, Cech JN, Osada N, Leal MC, Inoue J, Kume M, Toyoda A, Tezuka A, Nagano AJ, Yamasaki YY, Suzuki Y, Kokita T, Takahashi H, Lucek K, Marques D, Takehana Y, Naruse K, Mori S, Monroig O, Ladd N, Schubert CJ, Matthews B, Peichel CL, Seehausen O, Yoshizaki G, Kitano J.

Science. 2019 May 31;364(6443):886-889. doi: 10.1126/science.aau5656.

PMID:
31147520
9.

A SNP in a Steroidogenic Enzyme Is Associated with Phenotypic Sex in Seriola Fishes.

Koyama T, Nakamoto M, Morishima K, Yamashita R, Yamashita T, Sasaki K, Kuruma Y, Mizuno N, Suzuki M, Okada Y, Ieda R, Uchino T, Tasumi S, Hosoya S, Uno S, Koyama J, Toyoda A, Kikuchi K, Sakamoto T.

Curr Biol. 2019 Jun 3;29(11):1901-1909.e8. doi: 10.1016/j.cub.2019.04.069. Epub 2019 May 23.

PMID:
31130458
10.

Dietary intake of the citrus flavonoid hesperidin affects stress-resilience and brain kynurenine levels in a subchronic and mild social defeat stress model in mice.

Sato M, Okuno A, Suzuki K, Ohsawa N, Inoue E, Miyaguchi Y, Toyoda A.

Biosci Biotechnol Biochem. 2019 Sep;83(9):1756-1765. doi: 10.1080/09168451.2019.1621152. Epub 2019 May 23.

PMID:
31119994
11.

Specification of basal region identity after asymmetric zygotic division requires mitogen-activated protein kinase 6 in rice.

Ishimoto K, Sohonahra S, Kishi-Kaboshi M, Itoh JI, Hibara KI, Sato Y, Watanabe T, Abe K, Miyao A, Nosaka-Takahashi M, Suzuki T, Ta NK, Shimizu-Sato S, Suzuki T, Toyoda A, Takahashi H, Nakazono M, Nagato Y, Hirochika H, Sato Y.

Development. 2019 Jun 21;146(13). pii: dev176305. doi: 10.1242/dev.176305.

PMID:
31118231
12.

Genome Features and Secondary Metabolites Biosynthetic Potential of the Class Ktedonobacteria.

Zheng Y, Saitou A, Wang CM, Toyoda A, Minakuchi Y, Sekiguchi Y, Ueda K, Takano H, Sakai Y, Abe K, Yokota A, Yabe S.

Front Microbiol. 2019 Apr 26;10:893. doi: 10.3389/fmicb.2019.00893. eCollection 2019.

14.

Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions.

Kajitani R, Yoshimura D, Okuno M, Minakuchi Y, Kagoshima H, Fujiyama A, Kubokawa K, Kohara Y, Toyoda A, Itoh T.

Nat Commun. 2019 Apr 12;10(1):1702. doi: 10.1038/s41467-019-09575-2.

15.

Heat-killed Lactobacillus helveticus strain MCC1848 confers resilience to anxiety or depression-like symptoms caused by subchronic social defeat stress in mice.

Maehata H, Kobayashi Y, Mitsuyama E, Kawase T, Kuhara T, Xiao JZ, Tsukahara T, Toyoda A.

Biosci Biotechnol Biochem. 2019 Jul;83(7):1239-1247. doi: 10.1080/09168451.2019.1591263. Epub 2019 Mar 22.

PMID:
30898081
16.

Dietary Intake of Immature Citrus tumida Hort. ex Tanaka Peels Suppressed Body Weight Gain and Fat Accumulation in a Mouse Model of Acute Obesity.

Sato M, Goto T, Inoue E, Miyaguchi Y, Toyoda A.

J Nutr Sci Vitaminol (Tokyo). 2019;65(1):19-23. doi: 10.3177/jnsv.65.19.

17.

High-quality genome assembly of the silkworm, Bombyx mori.

Kawamoto M, Jouraku A, Toyoda A, Yokoi K, Minakuchi Y, Katsuma S, Fujiyama A, Kiuchi T, Yamamoto K, Shimada T.

Insect Biochem Mol Biol. 2019 Apr;107:53-62. doi: 10.1016/j.ibmb.2019.02.002. Epub 2019 Feb 23.

18.

Comparative analysis of seven types of superoxide dismutases for their ability to respond to oxidative stress in Bombyx mori.

Kobayashi Y, Nojima Y, Sakamoto T, Iwabuchi K, Nakazato T, Bono H, Toyoda A, Fujiyama A, Kanost MR, Tabunoki H.

Sci Rep. 2019 Feb 18;9(1):2170. doi: 10.1038/s41598-018-38384-8.

19.

[A Case of Rectal Cancer Presenting with Perianal Abscess].

Machida T, Ohta S, Kakimoto Y, Toyoda A, Endou Y, Murakami O.

Gan To Kagaku Ryoho. 2019 Jan;46(1):88-90. Japanese.

PMID:
30765650
20.

Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community.

Hiraoka S, Okazaki Y, Anda M, Toyoda A, Nakano SI, Iwasaki W.

Nat Commun. 2019 Jan 11;10(1):159. doi: 10.1038/s41467-018-08103-y.

21.

Androgen and Oestrogen Affect the Expression of Long Non-Coding RNAs During Phallus Development in a Marsupial.

Chen Y, Kuroki Y, Shaw G, Pask AJ, Yu H, Toyoda A, Fujiyama A, Renfree MB.

Noncoding RNA. 2018 Dec 30;5(1). pii: E3. doi: 10.3390/ncrna5010003.

22.

Effects of housing conditions on behaviors and biochemical parameters in juvenile cynomolgus monkeys (Macaca fascicularis).

Koyama H, Tachibana Y, Takaura K, Takemoto S, Morii K, Wada S, Kaneko H, Kimura M, Toyoda A.

Exp Anim. 2019 May 8;68(2):195-211. doi: 10.1538/expanim.18-0114. Epub 2018 Dec 21.

23.

Comparative assessment of 24-hr primary skin irritation test and human patch test data with in vitro skin irritation tests according to OECD Test Guideline 439 (for quasi-drugs in Japan).

Sugiyama M, Akita M, Alépée N, Fujishiro M, Hagino S, Handa Y, Ikeda H, Imai N, Jitsukawa S, Katoh M, Kurihara K, Kyotani D, Nomura S, Okamoto Y, Okumura H, Omori T, Sugibayashi K, Todo H, Toyoda A, Ohno Y.

J Toxicol Sci. 2018;43(12):751-768. doi: 10.2131/jts.43.751.

24.

Genomic Characterization of β-Glucuronidase-Positive Escherichia coli O157:H7 Producing Stx2a.

Ogura Y, Seto K, Morimoto Y, Nakamura K, Sato MP, Gotoh Y, Itoh T, Toyoda A, Ohnishi M, Hayashi T.

Emerg Infect Dis. 2018 Dec;24(12):2219-2227. doi: 10.3201/eid2412.180404.

25.

Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species.

Reuscher S, Furuta T, Bessho-Uehara K, Cosi M, Jena KK, Toyoda A, Fujiyama A, Kurata N, Ashikari M.

Commun Biol. 2018 Oct 5;1:162. doi: 10.1038/s42003-018-0171-y. eCollection 2018.

26.

An Evolutionarily Conserved Mesodermal Enhancer in Vertebrate Zic3.

Odaka YS, Tohmonda T, Toyoda A, Aruga J.

Sci Rep. 2018 Oct 8;8(1):14954. doi: 10.1038/s41598-018-33235-y.

27.

Anisogamy evolved with a reduced sex-determining region in volvocine green algae.

Hamaji T, Kawai-Toyooka H, Uchimura H, Suzuki M, Noguchi H, Minakuchi Y, Toyoda A, Fujiyama A, Miyagishima SY, Umen JG, Nozaki H.

Commun Biol. 2018 Mar 8;1:17. doi: 10.1038/s42003-018-0019-5. eCollection 2018.

28.

Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles.

Ando T, Matsuda T, Goto K, Hara K, Ito A, Hirata J, Yatomi J, Kajitani R, Okuno M, Yamaguchi K, Kobayashi M, Takano T, Minakuchi Y, Seki M, Suzuki Y, Yano K, Itoh T, Shigenobu S, Toyoda A, Niimi T.

Nat Commun. 2018 Sep 21;9(1):3843. doi: 10.1038/s41467-018-06116-1.

29.

Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses.

Tanizawa Y, Tada I, Kobayashi H, Endo A, Maeno S, Toyoda A, Arita M, Nakamura Y, Sakamoto M, Ohkuma M, Tohno M.

Int J Syst Evol Microbiol. 2018 Nov;68(11):3512-3517. doi: 10.1099/ijsem.0.003020. Epub 2018 Sep 18.

PMID:
30226464
30.

Control of directionality of chromatin folding for the inter- and intra-domain contacts at the Tfap2c-Bmp7 locus.

Tsujimura T, Takase O, Yoshikawa M, Sano E, Hayashi M, Takato T, Toyoda A, Okano H, Hishikawa K.

Epigenetics Chromatin. 2018 Sep 14;11(1):51. doi: 10.1186/s13072-018-0221-1.

31.

Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians.

An Y, Kawaguchi A, Zhao C, Toyoda A, Sharifi-Zarchi A, Mousavi SA, Bagherzadeh R, Inoue T, Ogino H, Fujiyama A, Chitsaz H, Baharvand H, Agata K.

Zoological Lett. 2018 Aug 29;4:24. doi: 10.1186/s40851-018-0102-2. eCollection 2018.

32.

Reduced fucosylation in the distal intestinal epithelium of mice subjected to chronic social defeat stress.

Omata Y, Aoki R, Aoki-Yoshida A, Hiemori K, Toyoda A, Tateno H, Suzuki C, Takayama Y.

Sci Rep. 2018 Sep 4;8(1):13199. doi: 10.1038/s41598-018-31403-8.

33.

Functional divergence of a heterochromatin-binding protein during stickleback speciation.

Yoshida K, Ishikawa A, Toyoda A, Shigenobu S, Fujiyama A, Kitano J.

Mol Ecol. 2019 Mar;28(6):1563-1578. doi: 10.1111/mec.14841. Epub 2018 Sep 7.

PMID:
30117211
34.

Endoribonuclease ENDU-2 regulates multiple traits including cold tolerance via cell autonomous and nonautonomous controls in Caenorhabditis elegans.

Ujisawa T, Ohta A, Ii T, Minakuchi Y, Toyoda A, Ii M, Kuhara A.

Proc Natl Acad Sci U S A. 2018 Aug 28;115(35):8823-8828. doi: 10.1073/pnas.1808634115. Epub 2018 Aug 13.

35.

Exploring the Limits and Causes of Plastid Genome Expansion in Volvocine Green Algae.

Gaouda H, Hamaji T, Yamamoto K, Kawai-Toyooka H, Suzuki M, Noguchi H, Minakuchi Y, Toyoda A, Fujiyama A, Nozaki H, Smith DR.

Genome Biol Evol. 2018 Sep 1;10(9):2248-2254. doi: 10.1093/gbe/evy175.

36.

The Chara Genome: Secondary Complexity and Implications for Plant Terrestrialization.

Nishiyama T, Sakayama H, de Vries J, Buschmann H, Saint-Marcoux D, Ullrich KK, Haas FB, Vanderstraeten L, Becker D, Lang D, Vosolsobě S, Rombauts S, Wilhelmsson PKI, Janitza P, Kern R, Heyl A, Rümpler F, Villalobos LIAC, Clay JM, Skokan R, Toyoda A, Suzuki Y, Kagoshima H, Schijlen E, Tajeshwar N, Catarino B, Hetherington AJ, Saltykova A, Bonnot C, Breuninger H, Symeonidi A, Radhakrishnan GV, Van Nieuwerburgh F, Deforce D, Chang C, Karol KG, Hedrich R, Ulvskov P, Glöckner G, Delwiche CF, Petrášek J, Van de Peer Y, Friml J, Beilby M, Dolan L, Kohara Y, Sugano S, Fujiyama A, Delaux PM, Quint M, Theißen G, Hagemann M, Harholt J, Dunand C, Zachgo S, Langdale J, Maumus F, Van Der Straeten D, Gould SB, Rensing SA.

Cell. 2018 Jul 12;174(2):448-464.e24. doi: 10.1016/j.cell.2018.06.033.

37.

The prehistoric peopling of Southeast Asia.

McColl H, Racimo F, Vinner L, Demeter F, Gakuhari T, Moreno-Mayar JV, van Driem G, Gram Wilken U, Seguin-Orlando A, de la Fuente Castro C, Wasef S, Shoocongdej R, Souksavatdy V, Sayavongkhamdy T, Saidin MM, Allentoft ME, Sato T, Malaspinas AS, Aghakhanian FA, Korneliussen T, Prohaska A, Margaryan A, de Barros Damgaard P, Kaewsutthi S, Lertrit P, Nguyen TMH, Hung HC, Minh Tran T, Nghia Truong H, Nguyen GH, Shahidan S, Wiradnyana K, Matsumae H, Shigehara N, Yoneda M, Ishida H, Masuyama T, Yamada Y, Tajima A, Shibata H, Toyoda A, Hanihara T, Nakagome S, Deviese T, Bacon AM, Duringer P, Ponche JL, Shackelford L, Patole-Edoumba E, Nguyen AT, Bellina-Pryce B, Galipaud JC, Kinaston R, Buckley H, Pottier C, Rasmussen S, Higham T, Foley RA, Lahr MM, Orlando L, Sikora M, Phipps ME, Oota H, Higham C, Lambert DM, Willerslev E.

Science. 2018 Jul 6;361(6397):88-92. doi: 10.1126/science.aat3628.

PMID:
29976827
38.

Molecular Characterization of Eye Pigmentation-Related ABC Transporter Genes in the Ladybird Beetle Harmonia axyridis Reveals Striking Gene Duplication of the white Gene.

Tsuji T, Gotoh H, Morita S, Hirata J, Minakuchi Y, Yaginuma T, Toyoda A, Niimi T.

Zoolog Sci. 2018 Jun;35(3):260-267. doi: 10.2108/zs170166.

PMID:
29882491
39.

Naturally occurring a loss of a giant plasmid from Mycobacterium ulcerans subsp. shinshuense makes it non-pathogenic.

Nakanaga K, Ogura Y, Toyoda A, Yoshida M, Fukano H, Fujiwara N, Miyamoto Y, Nakata N, Kazumi Y, Maeda S, Ooka T, Goto M, Tanigawa K, Mitarai S, Suzuki K, Ishii N, Ato M, Hayashi T, Hoshino Y.

Sci Rep. 2018 May 29;8(1):8218. doi: 10.1038/s41598-018-26425-1.

40.

The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression.

Ravinet M, Yoshida K, Shigenobu S, Toyoda A, Fujiyama A, Kitano J.

PLoS Genet. 2018 May 23;14(5):e1007358. doi: 10.1371/journal.pgen.1007358. eCollection 2018 May.

41.

Development of an in vitro photosafety evaluation method utilizing intracellular ROS production in THP-1 cells.

Toyoda A, Itagaki H.

J Toxicol Sci. 2018;43(4):247-256. doi: 10.2131/jts.43.247.

42.

Development of Implantable Wireless Sensor Nodes for Animal Husbandry and MedTech Innovation.

Lu J, Zhang L, Zhang D, Matsumoto S, Hiroshima H, Maeda R, Sato M, Toyoda A, Gotoh T, Ohkohchi N.

Sensors (Basel). 2018 Mar 26;18(4). pii: E979. doi: 10.3390/s18040979.

43.

Abnormal nuclear morphology is independent of longevity in a zmpste24-deficient fish model of Hutchinson-Gilford progeria syndrome (HGPS).

Tonoyama Y, Shinya M, Toyoda A, Kitano T, Oga A, Nishimaki T, Katsumura T, Oota H, Wan MT, Yip BWP, Helen MOL, Chisada S, Deguchi T, Au DWT, Naruse K, Kamei Y, Taniguchi Y.

Comp Biochem Physiol C Toxicol Pharmacol. 2018 Jul;209:54-62. doi: 10.1016/j.cbpc.2018.03.006. Epub 2018 Mar 19.

44.

Construction of a simple evaluation system for the intestinal absorption of an orally administered medicine using Bombyx mori larvae.

Ichino F, Bono H, Nakazato T, Toyoda A, Fujiyama A, Iwabuchi K, Sato R, Tabunoki H.

Drug Discov Ther. 2018;12(1):7-15. doi: 10.5582/ddt.2018.01004.

45.

Time-Course Transcriptomics Analysis Reveals Key Responses of Submerged Deepwater Rice to Flooding.

Minami A, Yano K, Gamuyao R, Nagai K, Kuroha T, Ayano M, Nakamori M, Koike M, Kondo Y, Niimi Y, Kuwata K, Suzuki T, Higashiyama T, Takebayashi Y, Kojima M, Sakakibara H, Toyoda A, Fujiyama A, Kurata N, Ashikari M, Reuscher S.

Plant Physiol. 2018 Apr;176(4):3081-3102. doi: 10.1104/pp.17.00858. Epub 2018 Feb 23.

46.

Effects of non-purified and semi-purified commercial diets on behaviors, plasma corticosterone levels, and cecum microbiome in C57BL/6J mice.

Toyoda A, Shimonishi H, Sato M, Usuda K, Ohsawa N, Nagaoka K.

Neurosci Lett. 2018 Mar 23;670:36-40. doi: 10.1016/j.neulet.2018.01.025. Epub 2018 Feb 20.

PMID:
29355696
47.

Mining of the Uncharacterized Cytochrome P450 Genes Involved in Alkaloid Biosynthesis in California Poppy Using a Draft Genome Sequence.

Hori K, Yamada Y, Purwanto R, Minakuchi Y, Toyoda A, Hirakawa H, Sato F.

Plant Cell Physiol. 2018 Feb 1;59(2):222-233. doi: 10.1093/pcp/pcx210.

48.

Draft Sequencing of the Heterozygous Diploid Genome of Satsuma (Citrus unshiu Marc.) Using a Hybrid Assembly Approach.

Shimizu T, Tanizawa Y, Mochizuki T, Nagasaki H, Yoshioka T, Toyoda A, Fujiyama A, Kaminuma E, Nakamura Y.

Front Genet. 2017 Dec 5;8:180. doi: 10.3389/fgene.2017.00180. eCollection 2017.

49.

CRISPR/Cas9-based knockouts reveal that CpRLP1 is a negative regulator of the sex pheromone PR-IP in the Closterium peracerosum-strigosum-littorale complex.

Kanda N, Ichikawa M, Ono A, Toyoda A, Fujiyama A, Abe J, Tsuchikane Y, Nishiyama T, Sekimoto H.

Sci Rep. 2017 Dec 19;7(1):17873. doi: 10.1038/s41598-017-18251-8.

50.

Evolution of sequence-specific anti-silencing systems in Arabidopsis.

Hosaka A, Saito R, Takashima K, Sasaki T, Fu Y, Kawabe A, Ito T, Toyoda A, Fujiyama A, Tarutani Y, Kakutani T.

Nat Commun. 2017 Dec 18;8(1):2161. doi: 10.1038/s41467-017-02150-7.

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