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Items: 1 to 50 of 364

1.

Accumulation of deleterious mutations in landlocked threespine stickleback populations.

Yoshida K, Ravinet M, Makino T, Toyoda A, Kokita T, Mori S, Kitano J.

Genome Biol Evol. 2020 Mar 31. pii: evaa065. doi: 10.1093/gbe/evaa065. [Epub ahead of print]

2.

Impaired bile acid metabolism with defectives of mitochondrial-tRNA taurine modification and bile acid taurine conjugation in the taurine depleted cats.

Miyazaki T, Sasaki SI, Toyoda A, Wei FY, Shirai M, Morishita Y, Ikegami T, Tomizawa K, Honda A.

Sci Rep. 2020 Mar 18;10(1):4915. doi: 10.1038/s41598-020-61821-6.

3.

[A Case of SIADH in an Elderly Patient with Advanced Gastric Cancer].

Machida T, Ohta S, Kakimoto Y, Toyoda A, Endou Y, Murakami O.

Gan To Kagaku Ryoho. 2019 Dec;46(13):2042-2044. Japanese.

PMID:
32157053
4.

[A Case of Histological Complete Remission after Chemotherapy for Paraaortic Lymph Node Recurrence after Colon Cancer Surgery].

Sonoda I, Chiku T, Shinoda K, Hashiba T, Sano W, Togawa Y, Toyoda A.

Gan To Kagaku Ryoho. 2019 Dec;46(13):2512-2514. Japanese.

PMID:
32156982
5.

Evolution and diversity of the wild rice Oryza officinalis complex, across continents genome types, and ploidy levels.

Shenton M, Kobayashi M, Terashima S, Ohyanagi H, Copetti D, Hernández-Hernández T, Zhang J, Ohmido N, Fujita M, Toyoda A, Ikawa H, Fujiyama A, Furuumi H, Miyabayashi T, Kubo T, Kudrna D, Wing R, Yano K, Nonomura KI, Sato Y, Kurata N.

Genome Biol Evol. 2020 Mar 3. pii: evaa037. doi: 10.1093/gbe/evaa037. [Epub ahead of print]

6.

Comprehensive analysis of DNA methylation and gene expression in orally tolerized T cells.

Toyoda A, Kozaki T, Ishii K, Taniishi M, Hattori M, Matsuda H, Yoshida T.

PLoS One. 2020 Feb 25;15(2):e0229042. doi: 10.1371/journal.pone.0229042. eCollection 2020.

7.

First Japanese case of trichoepithelioma papulosum multiplex successfully treated with sirolimus gel.

Shimizu A, Toyoda A, Motegi SI, Yasuda M, Ishikawa O.

J Dermatol. 2020 Feb 20. doi: 10.1111/1346-8138.15271. [Epub ahead of print] No abstract available.

PMID:
32077127
8.

Coenzyme A and Its Thioester Pools in Obese Zucker and Zucker Diabetic Fatty Rats.

Chohnan S, Matsuno S, Shimizu K, Tokutake Y, Kohari D, Toyoda A.

Nutrients. 2020 Feb 6;12(2). pii: E417. doi: 10.3390/nu12020417.

9.

Metabolomic analyses of plasma and liver of mice fed with immature Citrus tumida peel.

Toyoda A, Sato M, Muto M, Goto T, Miyaguchi Y, Inoue E.

Biosci Biotechnol Biochem. 2020 Feb 4:1-7. doi: 10.1080/09168451.2020.1719821. [Epub ahead of print]

PMID:
32019425
10.

The mechanoreceptor DEG-1 regulates cold tolerance in Caenorhabditis elegans.

Takagaki N, Ohta A, Ohnishi K, Kawanabe A, Minakuchi Y, Toyoda A, Fujiwara Y, Kuhara A.

EMBO Rep. 2020 Mar 4;21(3):e48671. doi: 10.15252/embr.201948671. Epub 2020 Feb 3.

11.

Tandem Paired Nicking Promotes Precise Genome Editing with Scarce Interference by p53.

Hyodo T, Rahman ML, Karnan S, Ito T, Toyoda A, Ota A, Wahiduzzaman M, Tsuzuki S, Okada Y, Hosokawa Y, Konishi H.

Cell Rep. 2020 Jan 28;30(4):1195-1207.e7. doi: 10.1016/j.celrep.2019.12.064.

12.

The Ficus erecta genome aids Ceratocystis canker resistance breeding in common fig (F. carica).

Shirasawa K, Yakushiji H, Nishimura R, Morita T, Jikumaru S, Ikegami H, Toyoda A, Hirakawa H, Isobe S.

Plant J. 2020 Jan 24. doi: 10.1111/tpj.14703. [Epub ahead of print]

PMID:
31978270
13.

Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28.

Nakamura K, Murase K, Sato MP, Toyoda A, Itoh T, Mainil JG, Piérard D, Yoshino S, Kimata K, Isobe J, Seto K, Etoh Y, Narimatsu H, Saito S, Yatsuyanagi J, Lee K, Iyoda S, Ohnishi M, Ooka T, Gotoh Y, Ogura Y, Hayashi T.

Microb Genom. 2020 Jan;6(1). doi: 10.1099/mgen.0.000323.

14.

Characteristics of induced mutations in offspring derived from irradiated mouse spermatogonia and mature oocytes.

Satoh Y, Asakawa JI, Nishimura M, Kuo T, Shinkai N, Cullings HM, Minakuchi Y, Sese J, Toyoda A, Shimada Y, Nakamura N, Uchimura A.

Sci Rep. 2020 Jan 8;10(1):37. doi: 10.1038/s41598-019-56881-2.

15.

Genotypic diversity of Streptococcus suis and the S. suis-like bacterium Streptococcus ruminantium in ruminants.

Okura M, Maruyama F, Ota A, Tanaka T, Matoba Y, Osawa A, Sadaat SM, Osaki M, Toyoda A, Ogura Y, Hayashi T, Takamatsu D.

Vet Res. 2019 Nov 14;50(1):94. doi: 10.1186/s13567-019-0708-1.

16.

Dialister hominis sp. nov., isolated from human faeces.

Sakamoto M, Ikeyama N, Toyoda A, Murakami T, Mori H, Iino T, Ohkuma M.

Int J Syst Evol Microbiol. 2020 Jan;70(1):589-595. doi: 10.1099/ijsem.0.003797.

PMID:
31661048
17.

A unicellular relative of animals generates a layer of polarized cells by actomyosin-dependent cellularization.

Dudin O, Ondracka A, Grau-Bové X, Haraldsen AA, Toyoda A, Suga H, Bråte J, Ruiz-Trillo I.

Elife. 2019 Oct 28;8. pii: e49801. doi: 10.7554/eLife.49801.

18.
19.

Influences of Taurine Deficiency on Bile Acids of the Bile in the Cat Model.

Miyazaki T, Sasaki SI, Toyoda A, Shirai M, Ikegami T, Matsuzaki Y, Honda A.

Adv Exp Med Biol. 2019;1155:35-44. doi: 10.1007/978-981-13-8023-5_4.

PMID:
31468384
20.

Clinical utility of the normal database of 123I-iodoamphetamine brain perfusion single photon emission computed tomography for statistical analysis using computed tomography-based attenuation correction: a multicenter study.

Yamazaki T, Inui Y, Ichihara T, Uno M, Ota S, Toyoda A, Ishiguro M, Kato T, Ito K, Toyama H.

Ann Nucl Med. 2019 Nov;33(11):835-841. doi: 10.1007/s12149-019-01395-0. Epub 2019 Aug 14.

PMID:
31414335
21.

Evidence for sympatric speciation in a Wallacean ancient lake.

Sutra N, Kusumi J, Montenegro J, Kobayashi H, Fujimoto S, Masengi KWA, Nagano AJ, Toyoda A, Matsunami M, Kimura R, Yamahira K.

Evolution. 2019 Sep;73(9):1898-1915. doi: 10.1111/evo.13821. Epub 2019 Aug 27.

PMID:
31407798
22.

Seasonal Stability and Dynamics of DNA Methylation in Plants in a Natural Environment.

Ito T, Nishio H, Tarutani Y, Emura N, Honjo MN, Toyoda A, Fujiyama A, Kakutani T, Kudoh H.

Genes (Basel). 2019 Jul 17;10(7). pii: E544. doi: 10.3390/genes10070544.

23.

Blastochloris tepida, sp. nov., a thermophilic species of the bacteriochlorophyll b-containing genus Blastochloris.

Madigan MT, Resnick SM, Kempher ML, Dohnalkova AC, Takaichi S, Wang-Otomo ZY, Toyoda A, Kurokawa K, Mori H, Tsukatani Y.

Arch Microbiol. 2019 Dec;201(10):1351-1359. doi: 10.1007/s00203-019-01701-4. Epub 2019 Jul 17.

PMID:
31317227
24.

Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing.

Kazama T, Okuno M, Watari Y, Yanase S, Koizuka C, Tsuruta Y, Sugaya H, Toyoda A, Itoh T, Tsutsumi N, Toriyama K, Koizuka N, Arimura SI.

Nat Plants. 2019 Jul;5(7):722-730. doi: 10.1038/s41477-019-0459-z. Epub 2019 Jul 8.

PMID:
31285556
25.

De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication.

Chen Z, Omori Y, Koren S, Shirokiya T, Kuroda T, Miyamoto A, Wada H, Fujiyama A, Toyoda A, Zhang S, Wolfsberg TG, Kawakami K, Phillippy AM; NISC Comparative Sequencing Program, Mullikin JC, Burgess SM.

Sci Adv. 2019 Jun 26;5(6):eaav0547. doi: 10.1126/sciadv.aav0547. eCollection 2019 Jun.

26.

Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer.

Yachida S, Mizutani S, Shiroma H, Shiba S, Nakajima T, Sakamoto T, Watanabe H, Masuda K, Nishimoto Y, Kubo M, Hosoda F, Rokutan H, Matsumoto M, Takamaru H, Yamada M, Matsuda T, Iwasaki M, Yamaji T, Yachida T, Soga T, Kurokawa K, Toyoda A, Ogura Y, Hayashi T, Hatakeyama M, Nakagama H, Saito Y, Fukuda S, Shibata T, Yamada T.

Nat Med. 2019 Jun;25(6):968-976. doi: 10.1038/s41591-019-0458-7. Epub 2019 Jun 6.

PMID:
31171880
27.

A key metabolic gene for recurrent freshwater colonization and radiation in fishes.

Ishikawa A, Kabeya N, Ikeya K, Kakioka R, Cech JN, Osada N, Leal MC, Inoue J, Kume M, Toyoda A, Tezuka A, Nagano AJ, Yamasaki YY, Suzuki Y, Kokita T, Takahashi H, Lucek K, Marques D, Takehana Y, Naruse K, Mori S, Monroig O, Ladd N, Schubert CJ, Matthews B, Peichel CL, Seehausen O, Yoshizaki G, Kitano J.

Science. 2019 May 31;364(6443):886-889. doi: 10.1126/science.aau5656.

PMID:
31147520
28.

A SNP in a Steroidogenic Enzyme Is Associated with Phenotypic Sex in Seriola Fishes.

Koyama T, Nakamoto M, Morishima K, Yamashita R, Yamashita T, Sasaki K, Kuruma Y, Mizuno N, Suzuki M, Okada Y, Ieda R, Uchino T, Tasumi S, Hosoya S, Uno S, Koyama J, Toyoda A, Kikuchi K, Sakamoto T.

Curr Biol. 2019 Jun 3;29(11):1901-1909.e8. doi: 10.1016/j.cub.2019.04.069. Epub 2019 May 23.

PMID:
31130458
29.

Dietary intake of the citrus flavonoid hesperidin affects stress-resilience and brain kynurenine levels in a subchronic and mild social defeat stress model in mice.

Sato M, Okuno A, Suzuki K, Ohsawa N, Inoue E, Miyaguchi Y, Toyoda A.

Biosci Biotechnol Biochem. 2019 Sep;83(9):1756-1765. doi: 10.1080/09168451.2019.1621152. Epub 2019 May 23.

PMID:
31119994
30.

Specification of basal region identity after asymmetric zygotic division requires mitogen-activated protein kinase 6 in rice.

Ishimoto K, Sohonahra S, Kishi-Kaboshi M, Itoh JI, Hibara KI, Sato Y, Watanabe T, Abe K, Miyao A, Nosaka-Takahashi M, Suzuki T, Ta NK, Shimizu-Sato S, Suzuki T, Toyoda A, Takahashi H, Nakazono M, Nagato Y, Hirochika H, Sato Y.

Development. 2019 Jun 21;146(13). pii: dev176305. doi: 10.1242/dev.176305.

31.

Genome Features and Secondary Metabolites Biosynthetic Potential of the Class Ktedonobacteria.

Zheng Y, Saitou A, Wang CM, Toyoda A, Minakuchi Y, Sekiguchi Y, Ueda K, Takano H, Sakai Y, Abe K, Yokota A, Yabe S.

Front Microbiol. 2019 Apr 26;10:893. doi: 10.3389/fmicb.2019.00893. eCollection 2019.

33.

Platanus-allee is a de novo haplotype assembler enabling a comprehensive access to divergent heterozygous regions.

Kajitani R, Yoshimura D, Okuno M, Minakuchi Y, Kagoshima H, Fujiyama A, Kubokawa K, Kohara Y, Toyoda A, Itoh T.

Nat Commun. 2019 Apr 12;10(1):1702. doi: 10.1038/s41467-019-09575-2.

34.

Heat-killed Lactobacillus helveticus strain MCC1848 confers resilience to anxiety or depression-like symptoms caused by subchronic social defeat stress in mice.

Maehata H, Kobayashi Y, Mitsuyama E, Kawase T, Kuhara T, Xiao JZ, Tsukahara T, Toyoda A.

Biosci Biotechnol Biochem. 2019 Jul;83(7):1239-1247. doi: 10.1080/09168451.2019.1591263. Epub 2019 Mar 22.

PMID:
30898081
35.

Dietary Intake of Immature Citrus tumida Hort. ex Tanaka Peels Suppressed Body Weight Gain and Fat Accumulation in a Mouse Model of Acute Obesity.

Sato M, Goto T, Inoue E, Miyaguchi Y, Toyoda A.

J Nutr Sci Vitaminol (Tokyo). 2019;65(1):19-23. doi: 10.3177/jnsv.65.19.

36.

High-quality genome assembly of the silkworm, Bombyx mori.

Kawamoto M, Jouraku A, Toyoda A, Yokoi K, Minakuchi Y, Katsuma S, Fujiyama A, Kiuchi T, Yamamoto K, Shimada T.

Insect Biochem Mol Biol. 2019 Apr;107:53-62. doi: 10.1016/j.ibmb.2019.02.002. Epub 2019 Feb 23.

37.

Comparative analysis of seven types of superoxide dismutases for their ability to respond to oxidative stress in Bombyx mori.

Kobayashi Y, Nojima Y, Sakamoto T, Iwabuchi K, Nakazato T, Bono H, Toyoda A, Fujiyama A, Kanost MR, Tabunoki H.

Sci Rep. 2019 Feb 18;9(1):2170. doi: 10.1038/s41598-018-38384-8.

38.

[A Case of Rectal Cancer Presenting with Perianal Abscess].

Machida T, Ohta S, Kakimoto Y, Toyoda A, Endou Y, Murakami O.

Gan To Kagaku Ryoho. 2019 Jan;46(1):88-90. Japanese.

PMID:
30765650
39.

Metaepigenomic analysis reveals the unexplored diversity of DNA methylation in an environmental prokaryotic community.

Hiraoka S, Okazaki Y, Anda M, Toyoda A, Nakano SI, Iwasaki W.

Nat Commun. 2019 Jan 11;10(1):159. doi: 10.1038/s41467-018-08103-y.

40.

Androgen and Oestrogen Affect the Expression of Long Non-Coding RNAs During Phallus Development in a Marsupial.

Chen Y, Kuroki Y, Shaw G, Pask AJ, Yu H, Toyoda A, Fujiyama A, Renfree MB.

Noncoding RNA. 2018 Dec 30;5(1). pii: E3. doi: 10.3390/ncrna5010003.

41.

Effects of housing conditions on behaviors and biochemical parameters in juvenile cynomolgus monkeys (Macaca fascicularis).

Koyama H, Tachibana Y, Takaura K, Takemoto S, Morii K, Wada S, Kaneko H, Kimura M, Toyoda A.

Exp Anim. 2019 May 8;68(2):195-211. doi: 10.1538/expanim.18-0114. Epub 2018 Dec 21.

42.

Comparative assessment of 24-hr primary skin irritation test and human patch test data with in vitro skin irritation tests according to OECD Test Guideline 439 (for quasi-drugs in Japan).

Sugiyama M, Akita M, Alépée N, Fujishiro M, Hagino S, Handa Y, Ikeda H, Imai N, Jitsukawa S, Katoh M, Kurihara K, Kyotani D, Nomura S, Okamoto Y, Okumura H, Omori T, Sugibayashi K, Todo H, Toyoda A, Ohno Y.

J Toxicol Sci. 2018;43(12):751-768. doi: 10.2131/jts.43.751.

43.

Genomic Characterization of β-Glucuronidase-Positive Escherichia coli O157:H7 Producing Stx2a.

Ogura Y, Seto K, Morimoto Y, Nakamura K, Sato MP, Gotoh Y, Itoh T, Toyoda A, Ohnishi M, Hayashi T.

Emerg Infect Dis. 2018 Dec;24(12):2219-2227. doi: 10.3201/eid2412.180404.

44.

Assembling the genome of the African wild rice Oryza longistaminata by exploiting synteny in closely related Oryza species.

Reuscher S, Furuta T, Bessho-Uehara K, Cosi M, Jena KK, Toyoda A, Fujiyama A, Kurata N, Ashikari M.

Commun Biol. 2018 Oct 5;1:162. doi: 10.1038/s42003-018-0171-y. eCollection 2018.

45.

An Evolutionarily Conserved Mesodermal Enhancer in Vertebrate Zic3.

Odaka YS, Tohmonda T, Toyoda A, Aruga J.

Sci Rep. 2018 Oct 8;8(1):14954. doi: 10.1038/s41598-018-33235-y.

46.

Anisogamy evolved with a reduced sex-determining region in volvocine green algae.

Hamaji T, Kawai-Toyooka H, Uchimura H, Suzuki M, Noguchi H, Minakuchi Y, Toyoda A, Fujiyama A, Miyagishima SY, Umen JG, Nozaki H.

Commun Biol. 2018 Mar 8;1:17. doi: 10.1038/s42003-018-0019-5. eCollection 2018.

47.

Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles.

Ando T, Matsuda T, Goto K, Hara K, Ito A, Hirata J, Yatomi J, Kajitani R, Okuno M, Yamaguchi K, Kobayashi M, Takano T, Minakuchi Y, Seki M, Suzuki Y, Yano K, Itoh T, Shigenobu S, Toyoda A, Niimi T.

Nat Commun. 2018 Sep 21;9(1):3843. doi: 10.1038/s41467-018-06116-1.

48.

Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses.

Tanizawa Y, Tada I, Kobayashi H, Endo A, Maeno S, Toyoda A, Arita M, Nakamura Y, Sakamoto M, Ohkuma M, Tohno M.

Int J Syst Evol Microbiol. 2018 Nov;68(11):3512-3517. doi: 10.1099/ijsem.0.003020. Epub 2018 Sep 18.

PMID:
30226464
49.

Control of directionality of chromatin folding for the inter- and intra-domain contacts at the Tfap2c-Bmp7 locus.

Tsujimura T, Takase O, Yoshikawa M, Sano E, Hayashi M, Takato T, Toyoda A, Okano H, Hishikawa K.

Epigenetics Chromatin. 2018 Sep 14;11(1):51. doi: 10.1186/s13072-018-0221-1.

50.

Draft genome of Dugesia japonica provides insights into conserved regulatory elements of the brain restriction gene nou-darake in planarians.

An Y, Kawaguchi A, Zhao C, Toyoda A, Sharifi-Zarchi A, Mousavi SA, Bagherzadeh R, Inoue T, Ogino H, Fujiyama A, Chitsaz H, Baharvand H, Agata K.

Zoological Lett. 2018 Aug 29;4:24. doi: 10.1186/s40851-018-0102-2. eCollection 2018.

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